def attach_intercept_args(self, group):
CombineToolBase.attach_intercept_args(self, group)
group.add_argument('-m', '--mass', required=True)
group.add_argument('-d', '--datacard', required=True)
group.add_argument('--redefineSignalPOIs')
group.add_argument('--setPhysicsModelParameters')
group.add_argument('--name', '-n', default='Test')
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument('--named',
metavar='PARAM1,PARAM2,...',
help=""" By
default the list of nuisance parameters will be loaded from the
input workspace. Use this option to specify a different list""")
group.add_argument('--exclude',
metavar='PARAM1,PARAM2,...',
help=""" Skip
these nuisances""")
group.add_argument('--doInitialFit',
action='store_true',
help="""Find
the crossings of all the POIs. Must have the output from this
before running with --doFits""")
group.add_argument('--splitInitial',
action='store_true',
help="""In
the initial fits generate separate jobs for each POI""")
group.add_argument('--doFits',
action='store_true',
help="""Actually
run the fits for the nuisance parameter impacts, otherwise just
looks for the results""")
group.add_argument('--allPars',
action='store_true',
help="""Run the
impacts for all free parameters of the model, not just those
listed as nuisance parameters""")
group.add_argument('--output',
'-o',
help="""write output json to a
file""")
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument('--opts',
nargs='+',
default=[],
help='Add preset combine option groups')
group.add_argument(
'--there',
action='store_true',
help='Run combine in the same directory as the workspace')
group.add_argument(
'--split-points',
type=int,
default=0,
help=
'When used in conjunction with --points will create multiple combine calls that each run at most the number of points specified here.'
)
group.add_argument(
'--boundlist',
help=
'Name of json-file which contains the ranges of physical parameters depending on the given mass and given physics model'
)
group.add_argument('--generate',
nargs='*',
default=[],
help='Generate sets of options')
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument('input',
nargs='+',
default=[],
help='The input files')
group.add_argument('-o',
'--output',
nargs='?',
const='limits.json',
default='limits.json',
help="""The name of the output json file.
When the --use-dirs option is set the enclosing directory name
will be appended to the filename given here.""")
group.add_argument(
'--use-dirs',
action='store_true',
help="""Use the directory structure to create multiple limit
outputs and to set the output file names""")
group.add_argument('--toys',
action='store_true',
help="""Collect toy values""")
group.add_argument(
'--limit-err',
action='store_true',
help="""Also store the uncertainties on the limit""")
def attach_intercept_args(self, group):
CombineToolBase.attach_intercept_args(self, group)
group.add_argument('-m', '--mass', required=True)
group.add_argument('-d', '--datacard', required=True)
group.add_argument('--redefineSignalPOIs')
group.add_argument('--setPhysicsModelParameters')
group.add_argument('--name', '-n', default='Test')
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument('--config',
help=('json configuration file'))
group.add_argument('--order', type=int, default=2,
help=('Taylor expand up to and including this order'))
group.add_argument('--cross-order', type=int, default=2,
help=('Taylor expand up to and including this order for the cross-order terms'))
group.add_argument('--choose-POIs', default=None,
help=('Explict list POIs to expand in'))
group.add_argument('--do-fits', action='store_true',
help=('Actually do the fits'))
group.add_argument('--test-mode', type=int, default=0,
help=('Test on the workspace'))
group.add_argument('--save', default=None,
help=('Save results to a json file'))
group.add_argument('--load', default=None,
help=('Load results from a json file'))
group.add_argument('--stencil-add', type=int, default=0,
help=('Add additional points to each stencil'))
group.add_argument('--stencil-min', type=int, default=3,
help=('Minimum number of points in stencil'))
group.add_argument('--drop-threshold', type=float, default=0.,
help=('Drop contributions below this threshold'))
group.add_argument('--multiple', type=int, default=1,
help=('Run multiple fixed points in one combine job'))
group.add_argument('--workspace-bestfit', action='store_true',
help=('Update the best-fit using the workspace snapshot'))
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
# group.add_argument('--offset', default=0, type=int,
# help='Start the loop over parameters with this offset (default: %(default)s)')
# group.add_argument('--advance', default=1, type=int,
# help='Advance this many parameters each step in the loop (default: %(default)s')
group.add_argument(
'--named',
metavar='PARAM1,PARAM2,...',
help=
('By default the list of nuisance parameters will be loaded from the input workspace. '
'Use this option to specify a different list'))
group.add_argument(
'--doInitialFit',
action='store_true',
help=
('Find the crossings of all the POIs. Must have the output from this before running with --doFits'
))
group.add_argument(
'--splitInitial',
action='store_true',
help=('In the initial fits generate separate jobs for each POI'))
group.add_argument(
'--doFits',
action='store_true',
help=
('Actually run the fits for the nuisance parameter impacts, otherwise just looks for the results'
))
group.add_argument('--output',
'-o',
help=('write output json to a file'))
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument(
'--opts', nargs='+', default=[], help='Add preset combine option groups')
group.add_argument(
'--there', action='store_true', help='Run combine in the same directory as the workspace')
group.add_argument('--split-points', type=int, default=0,
help='When used in conjunction with --points will create multiple combine calls that each run at most the number of points specified here.')
def attach_intercept_args(self, group):
CombineToolBase.attach_intercept_args(self, group)
group.add_argument(
'-m', '--mass', help='Supports range strings for multiple masses, e.g. "120:130:5,140 will produce three combine calls with mass values of 120, 125, 130 and 140"')
group.add_argument(
'--points', help='For use with "-M MultiDimFit --algo grid" to split scan points into separate jobs')
group.add_argument('--name', '-n', default='.Test',
help='Name used to label the combine output file, can be modified by other options')
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument(
'input', help='The input specified as FILE:WORKSPACE:DATASET or FILE:WORKSPACE')
group.add_argument(
'output', help='The output specified as FILE:WORKSPACE:DATASET or FILE:WORKSPACE')
group.add_argument(
'-d', '--data', help='Source data from other file, either FILE:WORKSPACE:DATA or FILE:DATA')
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument('-w', '--workspace', required=True)
group.add_argument('-d', '--data')
group.add_argument('-f', '--fitres')
group.add_argument('--match')
group.add_argument('--no-match')
group.add_argument('-o', '--output', default='nll')
group.add_argument('-p', '--points', default=200, type=int)
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument('-w', '--workspace', required=True)
group.add_argument('-d', '--data')
group.add_argument('-f', '--fitres')
group.add_argument('--match')
group.add_argument('--no-match')
group.add_argument('-o', '--output', default='nll')
group.add_argument('-p', '--points', default=200, type=int)
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument('input', help='The input file')
group.add_argument(
'--algo', help='The algo used in MultiDimFit', default='none')
group.add_argument(
'-P', '--POIs', help='The params that were scanned (in scan order)')
group.add_argument(
'--json', help='Write json output (format file.json:key1:key2..')
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument('config', help='json config file')
group.add_argument('--cycles',
default=0,
type=int,
help='Number of job cycles to create per point')
group.add_argument('--output',
action='store_true',
help='Write CLs grids into an output file')
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument(
'--opts', nargs='+', default=[], help='Add preset combine option groups')
group.add_argument(
'--there', action='store_true', help='Run combine in the same directory as the workspace')
group.add_argument('--split-points', type=int, default=0,
help='When used in conjunction with --points will create multiple combine calls that each run at most the number of points specified here.')
group.add_argument(
'--boundlist', help='Name of json-file which contains the ranges of physical parameters depending on the given mass and given physics model')
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument('-i', '--input', nargs='+', default=[],
help='The input file containing the MultiDimFit singles mode output')
group.add_argument(
'-o', '--output', help='The output name in the format file:prefix')
group.add_argument(
'-P', '--POIs', help='The params that were scanned (in scan order)')
group.add_argument(
'--POIs-from-set', help='Extract from file:workspace:set instead')
group.add_argument('--compare', help='Compare to RooFitResult')
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument('input', help='The input file')
group.add_argument('--algo',
help='The algo used in MultiDimFit',
default='none')
group.add_argument('-P',
'--POIs',
help='The params that were scanned (in scan order)')
group.add_argument(
'--json', help='Write json output (format file.json:key1:key2..')
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument('--input', nargs='+', default=[], help='The input files')
group.add_argument(
'-o', '--output', nargs='?', const='gof.json',
default='gof.json', help="""The name of the output json file.
When the --use-dirs option is set the enclosing directory name
will be appended to the filename given here.""")
group.add_argument(
'--use-dirs', action='store_true',
help="""Use the directory structure to create multiple limit
outputs and to set the output file names""")
def attach_intercept_args(self, group):
CombineToolBase.attach_intercept_args(self, group)
group.add_argument(
'-m', '--mass', help='Supports range strings for multiple masses, e.g. "120:130:5,140 will produce three combine calls with mass values of 120, 125, 130 and 140"')
group.add_argument(
'--points', help='For use with "-M MultiDimFit --algo grid" to split scan points into separate jobs')
group.add_argument(
'--singlePoint', help='Supports range strings for multiple points to test, uses the same format as the --mass argument')
group.add_argument(
'--boundlist', help='Name of json-file which contains the ranges of physical parameters depending on the given mass and given physics model')
group.add_argument('--name', '-n', default='.Test',
help='Name used to label the combine output file, can be modified by other options')
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument('--config', help=('json configuration file'))
group.add_argument(
'--order',
type=int,
default=2,
help=('Taylor expand up to and including this order'))
group.add_argument(
'--cross-order',
type=int,
default=2,
help=
('Taylor expand up to and including this order for the cross-order terms'
))
group.add_argument('--choose-POIs',
default=None,
help=('Explict list POIs to expand in'))
group.add_argument('--do-fits',
action='store_true',
help=('Actually do the fits'))
group.add_argument('--test-mode',
type=int,
default=0,
help=('Test on the workspace'))
group.add_argument('--save',
default=None,
help=('Save results to a json file'))
group.add_argument('--load',
default=None,
help=('Load results from a json file'))
group.add_argument('--stencil-add',
type=int,
default=0,
help=('Add additional points to each stencil'))
group.add_argument('--stencil-min',
type=int,
default=3,
help=('Minimum number of points in stencil'))
group.add_argument('--drop-threshold',
type=float,
default=0.,
help=('Drop contributions below this threshold'))
group.add_argument(
'--multiple',
type=int,
default=1,
help=('Run multiple fixed points in one combine job'))
group.add_argument(
'--workspace-bestfit',
action='store_true',
help=('Update the best-fit using the workspace snapshot'))
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
# group.add_argument('--offset', default=0, type=int,
# help='Start the loop over parameters with this offset (default: %(default)s)')
# group.add_argument('--advance', default=1, type=int,
# help='Advance this many parameters each step in the loop (default: %(default)s')
group.add_argument('--input-json',
help=('json file and dictionary containing the fit values, of form file:key1:key2..'))
group.add_argument('--do-fits', action='store_true',
help=('Actually do the fits'))
group.add_argument('--cov-method', choices=['full', 'asymm'], default='full')
group.add_argument('--cor-method', choices=['full', 'asymm', 'average'], default='full')
group.add_argument('--asymm-vals', default='')
group.add_argument('--do-generic', action='store_true')
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument('-i', '--input', nargs='+', help=""" A list of
input datacards and directories. For the latter, all .txt files
within the directory will be combined. If the -m option has not
been specified and the enclosing directory is a number, this will
be taken as the mass value to set. """)
group.add_argument('--cc', nargs='?', const=self.default_card,
default=None, help=""" Create a combined datacard
with a specified name from the individual cards given by the -i
option. Note that if this option is used without an argument a
default card name will be used. For directory arguments in -i, the
cards will be combined regardless of whether --cc is specified,
but can still be used to set the name of the combined card that is
created. """)
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument('-i', '--input', nargs='+', help=""" A list of
input datacards and directories. For the latter, all .txt files
within the directory will be combined. If the -m option has not
been specified and the enclosing directory is a number, this will
be taken as the mass value to set. """)
group.add_argument('--cc', nargs='?', const=self.default_card,
default=None, help=""" Create a combined datacard
with a specified name from the individual cards given by the -i
option. Note that if this option is used without an argument a
default card name will be used. For directory arguments in -i, the
cards will be combined regardless of whether --cc is specified,
but can still be used to set the name of the combined card that is
created. """)
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument('config', help='json config file')
group.add_argument('--cycles',
default=0,
type=int,
help='Number of job cycles to create per point')
group.add_argument('--output',
action='store_true',
help='Write CLs grids into an output file')
group.add_argument(
'--from-asymptotic',
default=None,
help=
'JSON file which will be used to create a limit grid automatically'
)
def attach_intercept_args(self, group):
CombineToolBase.attach_intercept_args(self, group)
group.add_argument(
'-m', '--mass', help='Supports range strings for multiple masses, e.g. "120:130:5,140 will produce three combine calls with mass values of 120, 125, 130 and 140"')
group.add_argument(
'--points', help='For use with "-M MultiDimFit --algo grid" to split scan points into separate jobs')
group.add_argument(
'--singlePoint', help='Supports range strings for multiple points to test, uses the same format as the --mass argument')
group.add_argument(
'-s', '--seed', help='Supports range strings for multiple RNG seeds, uses the same format as the --mass argument')
group.add_argument(
'-d', '--datacard', nargs='*', default=[], help='Operate on multiple datacards')
group.add_argument('--name', '-n', default='.Test',
help='Name used to label the combine output file, can be modified by other options')
group.add_argument(
'--setPhysicsModelParameterRanges', help='Some other options will modify or add to the list of parameter ranges')
def attach_intercept_args(self, group):
CombineToolBase.attach_intercept_args(self, group)
group.add_argument(
'-m', '--mass', help='Supports range strings for multiple masses, e.g. "120:130:5,140 will produce three combine calls with mass values of 120, 125, 130 and 140"')
group.add_argument(
'--points', help='For use with "-M MultiDimFit --algo grid" to split scan points into separate jobs')
group.add_argument(
'--singlePoint', help='Supports range strings for multiple points to test, uses the same format as the --mass argument')
group.add_argument(
'-s', '--seed', help='Supports range strings for multiple RNG seeds, uses the same format as the --mass argument')
group.add_argument(
'-d', '--datacard', nargs='*', default=[], help='Operate on multiple datacards')
group.add_argument('--name', '-n', default='.Test',
help='Name used to label the combine output file, can be modified by other options')
group.add_argument(
'--setPhysicsModelParameterRanges', help='Some other options will modify or add to the list of parameter ranges')
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
# group.add_argument('--offset', default=0, type=int,
# help='Start the loop over parameters with this offset (default: %(default)s)')
# group.add_argument('--advance', default=1, type=int,
# help='Advance this many parameters each step in the loop (default: %(default)s')
group.add_argument('--named', metavar='PARAM1,PARAM2,...',
help=('By default the list of nuisance parameters will be loaded from the input workspace. '
'Use this option to specify a different list'))
group.add_argument('--doInitialFit', action='store_true',
help=('Find the crossings of all the POIs. Must have the output from this before running with --doFits'))
group.add_argument('--splitInitial', action='store_true',
help=('In the initial fits generate separate jobs for each POI'))
group.add_argument('--doFits', action='store_true',
help=('Actually run the fits for the nuisance parameter impacts, otherwise just looks for the results'))
group.add_argument('--output', '-o',
help=('write output json to a file'))
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument('--opts',
nargs='+',
default=[],
help='Add preset combine option groups')
group.add_argument(
'--there',
action='store_true',
help='Run combine in the same directory as the workspace')
group.add_argument(
'--split-points',
type=int,
default=0,
help=
'When used in conjunction with --points will create multiple combine calls that each run at most the number of points specified here.'
)
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument(
'-i',
'--input',
nargs='+',
default=[],
help='The input file containing the MultiDimFit singles mode output'
)
group.add_argument('-o',
'--output',
help='The output name in the format file:prefix')
group.add_argument('-P',
'--POIs',
help='The params that were scanned (in scan order)')
group.add_argument('--POIs-from-set',
help='Extract from file:workspace:set instead')
group.add_argument('--compare', help='Compare to RooFitResult')
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument('--named', metavar='PARAM1,PARAM2,...', help=""" By
default the list of nuisance parameters will be loaded from the
input workspace. Use this option to specify a different list""")
group.add_argument('--doInitialFit', action='store_true', help="""Find
the crossings of all the POIs. Must have the output from this
before running with --doFits""")
group.add_argument('--splitInitial', action='store_true', help="""In
the initial fits generate separate jobs for each POI""")
group.add_argument('--doFits', action='store_true', help="""Actually
run the fits for the nuisance parameter impacts, otherwise just
looks for the results""")
group.add_argument('--allPars', action='store_true', help="""Run the
impacts for all free parameters of the model, not just those
listed as nuisance parameters""")
group.add_argument('--output', '-o', help="""write output json to a
file""")
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument('--named', metavar='PARAM1,PARAM2,...', help=""" By
default the list of nuisance parameters will be loaded from the
input workspace. Use this option to specify a different list""")
group.add_argument('--exclude', metavar='PARAM1,PARAM2,...', help=""" Skip
these nuisances. Also accepts regexp with syntax 'rgx{<my regexp>}'""")
group.add_argument('--doInitialFit', action='store_true', help="""Find
the crossings of all the POIs. Must have the output from this
before running with --doFits""")
group.add_argument('--splitInitial', action='store_true', help="""In
the initial fits generate separate jobs for each POI""")
group.add_argument('--doFits', action='store_true', help="""Actually
run the fits for the nuisance parameter impacts, otherwise just
looks for the results""")
group.add_argument('--allPars', action='store_true', help="""Run the
impacts for all free parameters of the model, not just those
listed as nuisance parameters""")
group.add_argument('--output', '-o', help="""write output json to a
file""")
group.add_argument('--approx', default=None, choices=['hesse', 'robust'],
help="""Calculate impacts using the covariance matrix instead""")
group.add_argument('--noInitialFit', action='store_true', default=False, help="""Do not look for results from the initial Fit""")
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument('config', help='json config file')
def attach_intercept_args(self, group):
CombineToolBase.attach_intercept_args(self, group)
group.add_argument('--setPhysicsModelParameters', default=None)
group.add_argument('--freezeNuisances', default=None)
def attach_intercept_args(self, group):
CombineToolBase.attach_intercept_args(self, group)
group.add_argument('--name', '-n', default='Test')
group.add_argument('-m', '--mass', required=True)
def set_args(self, known, unknown):
CombineToolBase.set_args(self, known, unknown)
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument(
'-i', '--input', nargs='+', default=[], help='The input files')
group.add_argument(
'-o', '--output', help='The name of the output json file')
def set_args(self, known, unknown):
CombineToolBase.set_args(self, known, unknown)
if hasattr(self.args, 'opts'):
for opt in self.args.opts:
self.passthru.append(OPTS[opt])
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument(
'input', help='The input specified as FILE:WORKSPACE')
def set_args(self, known, unknown):
CombineToolBase.set_args(self, known, unknown)
def attach_intercept_args(self, group):
CombineToolBase.attach_intercept_args(self, group)
group.add_argument('--name', '-n', default='Test')
group.add_argument('-m', '--mass', required=True)
group.add_argument('-d', '--datacard', required=True)
def __init__(self):
CombineToolBase.__init__(self)
self.nll = None
def attach_intercept_args(self, group): CombineToolBase.attach_intercept_args(self, group)
def attach_intercept_args(self, group):
CombineToolBase.attach_intercept_args(self, group)
group.add_argument(
'-m', '--mass', help="""
The mass value to set in the text2workspace.py call""")
def attach_intercept_args(self, group):
CombineToolBase.attach_intercept_args(self, group)
def __init__(self):
CombineToolBase.__init__(self)
self.nll = None
def attach_intercept_args(self, group):
CombineToolBase.attach_intercept_args(self, group)
group.add_argument(
'-m', '--mass', help="""
The mass value to set in the text2workspace.py call""")
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument('input', help='The input file')
group.add_argument(
'-P', '--POIs', help='The params that were scanned (in scan order)')
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument('config', help='json config file')
group.add_argument('--cycles', default=0, type=int, help='Number of job cycles to create per point')
group.add_argument('--output', action='store_true', help='Write CLs grids into an output file')
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument('config', help='json config file')
group.add_argument('--cycles', default=0, type=int, help='Number of job cycles to create per point')
group.add_argument('--output', action='store_true', help='Write CLs grids into an output file')
group.add_argument('--from-asymptotic', default=None, help='JSON file which will be used to create a limit grid automatically')
def __init__(self):
CombineToolBase.__init__(self)
def attach_intercept_args(self, group):
CombineToolBase.attach_intercept_args(self, group)
group.add_argument('--setPhysicsModelParameters', default=None)
group.add_argument('--freezeNuisances', default=None)
def __init__(self):
CombineToolBase.__init__(self)
def attach_args(self, group):
CombineToolBase.attach_args(self, group)
group.add_argument('config', help='json config file')
def set_args(self, known, unknown):
CombineToolBase.set_args(self, known, unknown)
if hasattr(self.args, 'opts'):
for opt in self.args.opts:
self.passthru.append(OPTS[opt])
def attach_intercept_args(self, group):
CombineToolBase.attach_intercept_args(self, group)
group.add_argument('--setParameters', default=None)
group.add_argument('--freezeParameters', default=None)
