Exemplos de TreeGram.setScaleBar em Python

Exemplo n.º 1

Arquivo: generate_gram_tree.py Projeto: alexanderjaffe/phylo

tg.latexOtherPreambleCommands.append(r"\colorlet{euka3}{euka2!30!white}")
tg.latexOtherPreambleCommands.append(r"\colorlet{cren3}{cren2!20!white}")
tg.latexOtherPreambleCommands.append(r"\colorlet{thau3}{thau2!30!white}")
tg.latexOtherPreambleCommands.append(r"\colorlet{aiga3}{aiga2!30!white}")
tg.latexOtherPreambleCommands.append(r"\colorlet{kora3}{kora2!30!white}")
tg.latexOtherPreambleCommands.append(r"\colorlet{ther3}{ther2!30!white}")
tg.latexOtherPreambleCommands.append(r"\colorlet{dpan3}{dpan2!30!white}")

tg.font = 'helvetica'
tg.documentFontSize = 10
tg.dirName = 'Gram'
#tg.pdfViewer = 'ls' #'open'
tg.baseName = treename

tg.leafLabelSize = 'normalsize'
tg.internalNodeLabelSize = 'normalsize'
tg.branchLabelSize = 'small'
tg.tgDefaultLineThickness = 'thick'  # default 'semithick'
tg.setScaleBar(yOffset=-1.0, length=0.2)
t.draw()
tg.bracketsLineUp = False
tg.render()
st = tg.tikzStyleDict['bracket label']
st.textShape = 'itshape'
st.textSize = 'large'

tg.fixTextOverlaps()
tg.epdf()
os.system("open Gram/" + treename + ".pdf")
#tg.tweaker()

Exemplo n.º 2

Arquivo: clean_alternative.py Projeto: alexanderjaffe/phylo

        g = tg.setBracket(5,14, text = "DPANN", leftNode=2)
        g.fill = 'dpan3'
        g = tg.setBracket(74,86, text = "Bacteria", leftNode=72)
        g.fill = 'bact3'
        g = tg.setBracket(17,26, text = "Euryarchaeota", leftNode=16)
        g.fill = 'eury3'
        g = tg.setBracket(29,29, text = "Korarchaeota", leftNode=28)
        g.fill = 'kora3'
        tg.bracketsLineUp = False

    #tg.leafLabelSize = 'normalsize'
    #tg.internalNodeLabelSize = 'normalsize'
    tg.branchLabelSize = tg.internalNodeLabelSize
    tg.tgDefaultLineThickness = 'thick' # default 'semithick'
    #tg.setScaleBar(yOffset = -1.0,length=0.2)
    tg.setScaleBar(length=0.2)
    tg.setBrokenBranch(72)

    n = t.node(1)
    tg.setBranchLabel(n, "1")

    # Only one tweak needed, for node 16.
    # Note that the label is adjusted, not the node.
    t.node(16).label.xShift = -0.25

    tg.render()
    st = tg.tikzStyleDict['bracket label']
    st.textShape = 'itshape'
    st.textSize = 'large'
    st = tg.tikzStyleDict['leaf']
    st.textShape = 'itshape'

Exemplo n.º 3

Arquivo: generate_gram_tree.py Projeto: Tancata/phylo

tg.latexOtherPreambleCommands.append(r"\colorlet{euka3}{euka2!30!white}")
tg.latexOtherPreambleCommands.append(r"\colorlet{cren3}{cren2!20!white}")
tg.latexOtherPreambleCommands.append(r"\colorlet{thau3}{thau2!30!white}")
tg.latexOtherPreambleCommands.append(r"\colorlet{aiga3}{aiga2!30!white}")
tg.latexOtherPreambleCommands.append(r"\colorlet{kora3}{kora2!30!white}")
tg.latexOtherPreambleCommands.append(r"\colorlet{ther3}{ther2!30!white}")
tg.latexOtherPreambleCommands.append(r"\colorlet{dpan3}{dpan2!30!white}")
    
tg.font = 'helvetica'
tg.documentFontSize=10
tg.dirName = 'Gram'
#tg.pdfViewer = 'ls' #'open'
tg.baseName = treename

tg.leafLabelSize = 'normalsize'
tg.internalNodeLabelSize = 'normalsize'
tg.branchLabelSize = 'small'
tg.tgDefaultLineThickness = 'thick' # default 'semithick'
tg.setScaleBar(yOffset = -1.0,length=0.2)
t.draw()
tg.bracketsLineUp = False
tg.render()
st = tg.tikzStyleDict['bracket label']
st.textShape = 'itshape'
st.textSize = 'large'

tg.fixTextOverlaps()   
tg.epdf()
os.system("open Gram/" + treename + ".pdf")
#tg.tweaker()