def __init__(self, *args):
"""Based on the GenericDiffractometer without centering motors"""
GenericDiffractometer.__init__(self, *args)
# Hardware objects ----------------------------------------------------
self.zoom_motor_hwobj = None
self.camera_hwobj = None
self.omega_reference_motor = None
self.detector_distance_motor_hwobj = None
# Channels and commands -----------------------------------------------
self.chan_beamstop_position = None
self.chan_calib_x = None
self.chan_calib_y = None
self.chan_current_phase = None
self.chan_fast_shutter_is_open = None
self.chan_state = None
self.chan_sync_move_motors = None
self.chan_scintillator_position = None
self.chan_capillary_position = None
self.chan_status = None
self.cmd_start_set_phase = None
self.cmd_start_auto_focus = None
self.cmd_save_centring_positions = None
# Internal values -----------------------------------------------------
self.use_sc = False
self.omega_reference_par = None
self.omega_reference_pos = [0, 0]
self.current_state = None
self.fast_shutter_is_open = None
def __init__(self, *args):
"""
Description:
"""
GenericDiffractometer.__init__(self, *args)
# Hardware objects ----------------------------------------------------
self.zoom_motor_hwobj = None
self.camera_hwobj = None
self.omega_reference_motor = None
self.centring_hwobj = None
self.minikappa_correction_hwobj = None
self.detector_distance_motor_hwobj = None
# Channels and commands -----------------------------------------------
self.chan_calib_x = None
self.chan_calib_y = None
self.chan_current_phase = None
self.chan_head_type = None
self.chan_fast_shutter_is_open = None
self.chan_state = None
self.chan_status = None
self.chan_sync_move_motors = None
self.chan_scintillator_position = None
self.chan_capillary_position = None
self.cmd_start_set_phase = None
self.cmd_start_auto_focus = None
self.cmd_get_omega_scan_limits = None
self.cmd_save_centring_positions = None
# Internal values -----------------------------------------------------
self.use_sc = False
self.omega_reference_pos = [0, 0]
self.reference_pos = [680, 512]
def __init__(self, *args):
GenericDiffractometer.__init__(self, *args)
# Hardware objects ----------------------------------------------------
self.zoom_motor_hwobj = None
self.camera_hwobj = None
self.omega_reference_motor = None
self.centring_hwobj = None
self.minikappa_correction_hwobj = None
self.detector_distance_motor_hwobj = None
# Channels and commands -----------------------------------------------
self.chan_calib_x = None
self.chan_calib_y = None
self.chan_current_phase = None
self.chan_head_type = None
self.chan_fast_shutter_is_open = None
self.chan_state = None
self.chan_sync_move_motors = None
self.chan_scintillator_position = None
self.chan_capillary_position = None
self.cmd_start_set_phase = None
self.cmd_start_auto_focus = None
self.cmd_get_omega_scan_limits = None
self.cmd_save_centring_positions = None
# Internal values -----------------------------------------------------
self.use_sc = False
self.omega_reference_par = None
self.omega_reference_pos = [0, 0]
self.imaging_pixels_per_mm = [0, 0]
self.current_phase = None
def __init__(self, *args):
"""Based on the GenericDiffractometer without centering motors"""
GenericDiffractometer.__init__(self, *args)
# Hardware objects ----------------------------------------------------
self.zoom_motor_hwobj = None
self.camera_hwobj = None
self.omega_reference_motor = None
self.detector_distance_motor_hwobj = None
# Channels and commands -----------------------------------------------
self.chan_beamstop_position = None
self.chan_calib_x = None
self.chan_calib_y = None
self.chan_current_phase = None
self.chan_fast_shutter_is_open = None
self.chan_state = None
self.chan_sync_move_motors = None
self.chan_scintillator_position = None
self.chan_capillary_position = None
self.chan_status = None
self.cmd_start_set_phase = None
self.cmd_start_auto_focus = None
self.cmd_save_centring_positions = None
# Internal values -----------------------------------------------------
self.use_sc = False
self.omega_reference_par = None
self.omega_reference_pos = [0, 0]
self.current_state = None
self.fast_shutter_is_open = None
def init(self):
GenericDiffractometer.init(self)
self.front_light = self.getObjectByRole("frontlight")
self.back_light = self.getObjectByRole("backlight")
self.back_light_switch = self.getObjectByRole("backlightswitch")
self.front_light_switch = self.getObjectByRole("frontlightswitch")
def __init__(self, *args):
"""
Description:
"""
GenericDiffractometer.__init__(self, *args)
# Compatibility line
self.C3D_MODE = GenericDiffractometer.CENTRING_METHOD_AUTO
self.MANUAL3CLICK_MODE = "Manual 3-click"
def move_to_beam(self, x, y, omega=None):
"""Creates a new centring point based on all motors positions
"""
if self.current_phase != "BeamLocation":
GenericDiffractometer.move_to_beam(self, x, y, omega)
else:
logging.getLogger(
"HWR").debug("Diffractometer: Move to screen" +
" position disabled in BeamLocation phase.")
def move_to_beam(self, x, y, omega=None):
"""Creates a new centring point based on all motors positions
"""
if self.current_phase != "BeamLocation":
GenericDiffractometer.move_to_beam(self, x, y, omega)
else:
logging.getLogger("HWR").debug(
"Diffractometer: Move to screen"
+ " position disabled in BeamLocation phase."
)
def start_auto_centring(self, *args, **kwargs):
"""
Start manual centring. Overrides GenericDiffracometer method.
Prepares diffractometer for manual centring.
"""
if self.prepare_centring():
GenericDiffractometer.start_auto_centring(self, *args, **kwargs)
else:
logging.getLogger("HWR").info(
" Failed to prepare diffractometer for centring")
self.invalidate_centring()
def start_auto_centring(self, *args, **kwargs):
"""
Start manual centring. Overrides GenericDiffracometer method.
Prepares diffractometer for manual centring.
"""
if self.prepare_centring():
GenericDiffractometer.start_auto_centring(self, *args, **kwargs)
else:
logging.getLogger("HWR").info(
" Failed to prepare diffractometer for centring"
)
self.invalidate_centring()
def __init__(self, *args):
"""
Description:
"""
GenericDiffractometer.__init__(self, *args)
# Hardware objects ----------------------------------------------------
self.zoom_motor_hwobj = None
self.omega_reference_motor = None
self.centring_hwobj = None
self.minikappa_correction_hwobj = None
self.nclicks = None
self.step = None
self.centring_method = None
self.collecting = False
# Channels and commands -----------------------------------------------
self.chan_calib_x = None
self.chan_calib_y = None
self.chan_current_phase = None
self.chan_head_type = None
self.chan_fast_shutter_is_open = None
self.chan_state = None
self.chan_status = None
self.chan_sync_move_motors = None
self.chan_scintillator_position = None
self.chan_capillary_position = None
self.cmd_start_set_phase = None
self.cmd_start_auto_focus = None
self.cmd_get_omega_scan_limits = None
self.cmd_save_centring_positions = None
self.centring_time = None
# Internal values -----------------------------------------------------
self.use_sc = False
self.omega_reference_pos = [0, 0]
self.reference_pos = [680, 512]
self.goniometer = goniometer()
self.camera = camera()
self.detector = detector()
self.md2_to_mxcube = dict(
[(key, value) for key, value in self.motor_name_mapping]
)
self.mxcube_to_md2 = dict(
[(value, key) for key, value in self.motor_name_mapping]
)
self.log = logging.getLogger("HWR")
def init(self):
"""Initiates variables"""
GenericDiffractometer.init(self)
self.chan_state = self.getChannelObject("State")
self.current_state = self.chan_state.getValue()
self.chan_state.connectSignal("update", self.state_changed)
self.chan_status = self.getChannelObject("Status")
self.chan_status.connectSignal("update", self.status_changed)
self.chan_calib_x = self.getChannelObject("CoaxCamScaleX")
self.chan_calib_y = self.getChannelObject("CoaxCamScaleY")
self.update_pixels_per_mm()
self.chan_current_phase = self.getChannelObject("CurrentPhase")
self.connect(self.chan_current_phase, "update",
self.current_phase_changed)
self.chan_fast_shutter_is_open = self.getChannelObject(
"FastShutterIsOpen")
self.chan_fast_shutter_is_open.connectSignal(
"update", self.fast_shutter_state_changed)
self.chan_scintillator_position = self.getChannelObject(
"ScintillatorPosition")
self.chan_capillary_position = self.getChannelObject(
"CapillaryPosition")
self.cmd_start_set_phase = self.getCommandObject("startSetPhase")
self.cmd_start_auto_focus = self.getCommandObject("startAutoFocus")
self.detector_distance_motor_hwobj = self.getObjectByRole(
"detector_distance_motor")
self.zoom_motor_hwobj = self.getObjectByRole("zoom")
self.connect(self.zoom_motor_hwobj, "positionChanged",
self.zoom_position_changed)
self.connect(
self.zoom_motor_hwobj,
"predefinedPositionChanged",
self.zoom_motor_predefined_position_changed,
)
self.chan_beamstop_position = self.getChannelObject("BeamstopPosition")
def init(self):
"""Initiates variables"""
GenericDiffractometer.init(self)
self.chan_state = self.getChannelObject("State")
self.current_state = self.chan_state.getValue()
self.chan_state.connectSignal("update", self.state_changed)
self.chan_status = self.getChannelObject("Status")
self.chan_status.connectSignal("update", self.status_changed)
self.chan_calib_x = self.getChannelObject("CoaxCamScaleX")
self.chan_calib_y = self.getChannelObject("CoaxCamScaleY")
self.update_pixels_per_mm()
self.chan_current_phase = self.getChannelObject("CurrentPhase")
self.connect(self.chan_current_phase, "update", self.current_phase_changed)
self.chan_fast_shutter_is_open = self.getChannelObject("FastShutterIsOpen")
self.chan_fast_shutter_is_open.connectSignal(
"update", self.fast_shutter_state_changed
)
self.chan_scintillator_position = self.getChannelObject("ScintillatorPosition")
self.chan_capillary_position = self.getChannelObject("CapillaryPosition")
self.cmd_start_set_phase = self.getCommandObject("startSetPhase")
self.cmd_start_auto_focus = self.getCommandObject("startAutoFocus")
self.detector_distance_motor_hwobj = self.getObjectByRole(
"detector_distance_motor"
)
self.zoom_motor_hwobj = self.getObjectByRole("zoom")
self.connect(
self.zoom_motor_hwobj, "positionChanged", self.zoom_position_changed
)
self.connect(
self.zoom_motor_hwobj,
"predefinedPositionChanged",
self.zoom_motor_predefined_position_changed,
)
self.chan_beamstop_position = self.getChannelObject("BeamstopPosition")
def init(self):
self.smargon = self.getObjectByRole("smargon")
self.connect(self.smargon, "stateChanged", self.smargon_state_changed)
self.lightarm_hwobj = self.getObjectByRole("lightarm")
# self.centring_hwobj = self.getObjectByRole('centring')
self.px1conf_ho = self.getObjectByRole("px1configuration")
self.px1env_ho = self.getObjectByRole("px1environment")
self.pixels_per_mm_x = 0
self.pixels_per_mm_y = 0
GenericDiffractometer.init(self)
self.centring_methods = {
GenericDiffractometer.CENTRING_METHOD_MANUAL: self.px1_manual_centring,
GenericDiffractometer.CENTRING_METHOD_AUTO: self.start_automatic_centring,
GenericDiffractometer.CENTRING_METHOD_MOVE_TO_BEAM: self.start_move_to_beam,
}
def init(self):
self.smargon = self.getObjectByRole("smargon")
self.connect(self.smargon, "stateChanged", self.smargon_state_changed)
self.lightarm_hwobj = self.getObjectByRole("lightarm")
# self.centring_hwobj = self.getObjectByRole('centring')
self.px1conf_ho = self.getObjectByRole("px1configuration")
self.px1env_ho = self.getObjectByRole("px1environment")
self.pixels_per_mm_x = 0
self.pixels_per_mm_y = 0
GenericDiffractometer.init(self)
self.centring_methods = {
GenericDiffractometer.CENTRING_METHOD_MANUAL: self.px1_manual_centring,
GenericDiffractometer.CENTRING_METHOD_AUTO: self.start_automatic_centring,
GenericDiffractometer.CENTRING_METHOD_MOVE_TO_BEAM: self.start_move_to_beam,
}
def init(self):
"""
Descript. :
"""
GenericDiffractometer.init(self)
self.current_phase = GenericDiffractometer.PHASE_CENTRING
self.cancel_centring_methods = {}
self.current_state_dict = {}
self.centring_status = {"valid": False}
self.centring_time = 0
#using sample_centring module
self.centring_phi = sample_centring.CentringMotor(
self.motor_hwobj_dict["phi"],
direction=-1,
)
self.centring_phiz = sample_centring.CentringMotor(
self.motor_hwobj_dict["phiz"], direction=1, units='microns')
self.centring_phiy = sample_centring.CentringMotor(
self.motor_hwobj_dict["phiy"],
direction=1,
units='microns',
)
self.centring_sampx = sample_centring.CentringMotor(
self.motor_hwobj_dict["sampx"],
units='microns',
)
self.centring_sampy = sample_centring.CentringMotor(
self.motor_hwobj_dict["sampy"],
units='microns',
)
self.update_zoom_calibration()
def __init__(self, *args):
GenericDiffractometer.__init__(self, *args)
self.centring_hwobj = None
def init(self):
self.calibration = self.getObjectByRole("calibration")
self.centring_hwobj = self.getObjectByRole("centring")
if self.centring_hwobj is None:
logging.getLogger("HWR").debug(
"EMBLMinidiff: Centring math is not defined")
self.cmd_start_auto_focus = self.get_command_object("startAutoFocus")
self.phi_motor_hwobj = self.getObjectByRole("phi")
self.phiz_motor_hwobj = self.getObjectByRole("phiz")
self.phiy_motor_hwobj = self.getObjectByRole("phiy")
self.zoom_motor_hwobj = self.getObjectByRole("zoom")
self.focus_motor_hwobj = self.getObjectByRole("focus")
self.sample_x_motor_hwobj = self.getObjectByRole("sampx")
self.sample_y_motor_hwobj = self.getObjectByRole("sampy")
if self.phi_motor_hwobj is not None:
self.connect(self.phi_motor_hwobj, "stateChanged",
self.phi_motor_state_changed)
self.connect(self.phi_motor_hwobj, "valueChanged",
self.phi_motor_moved)
else:
logging.getLogger("HWR").error(
"EMBLMiniDiff: Phi motor is not defined")
if self.phiz_motor_hwobj is not None:
self.connect(self.phiz_motor_hwobj, "stateChanged",
self.phiz_motor_state_changed)
self.connect(self.phiz_motor_hwobj, "valueChanged",
self.phiz_motor_moved)
else:
logging.getLogger("HWR").error(
"EMBLMiniDiff: Phiz motor is not defined")
if self.phiy_motor_hwobj is not None:
self.connect(self.phiy_motor_hwobj, "stateChanged",
self.phiy_motor_state_changed)
self.connect(self.phiy_motor_hwobj, "valueChanged",
self.phiy_motor_moved)
else:
logging.getLogger("HWR").error(
"EMBLMiniDiff: Phiy motor is not defined")
if self.zoom_motor_hwobj is not None:
self.connect(self.zoom_motor_hwobj, "valueChanged",
self.zoom_position_changed)
self.connect(
self.zoom_motor_hwobj,
"predefinedPositionChanged",
self.zoom_motor_predefined_position_changed,
)
self.connect(self.zoom_motor_hwobj, "stateChanged",
self.zoom_motor_state_changed)
else:
logging.getLogger("HWR").error(
"EMBLMiniDiff: Zoom motor is not defined")
if self.sample_x_motor_hwobj is not None:
self.connect(
self.sample_x_motor_hwobj,
"stateChanged",
self.sampleX_motor_state_changed,
)
self.connect(self.sample_x_motor_hwobj, "valueChanged",
self.sampleX_motor_moved)
else:
logging.getLogger("HWR").error(
"EMBLMiniDiff: Sampx motor is not defined")
if self.sample_y_motor_hwobj is not None:
self.connect(
self.sample_y_motor_hwobj,
"stateChanged",
self.sampleY_motor_state_changed,
)
self.connect(self.sample_y_motor_hwobj, "valueChanged",
self.sampleY_motor_moved)
else:
logging.getLogger("HWR").error(
"EMBLMiniDiff: Sampx motor is not defined")
if self.focus_motor_hwobj is not None:
self.connect(self.focus_motor_hwobj, "valueChanged",
self.focus_motor_moved)
GenericDiffractometer.init(self)
def init(self):
self.calibration = self.get_object_by_role("calibration")
self.centring_hwobj = self.get_object_by_role("centring")
self.super_hwobj = self.get_object_by_role("beamline-supervisor")
if self.centring_hwobj is None:
logging.getLogger("HWR").debug("ALBAMinidiff: Centring math is not defined")
if self.super_hwobj is not None:
self.connect(
self.super_hwobj, "stateChanged", self.supervisor_state_changed
)
self.connect(
self.super_hwobj, "phaseChanged", self.supervisor_phase_changed
)
self.state_channel = self.get_channel_object("State")
self.connect(self.state_channel, "update", self.state_changed)
# This is not used
self.cmd_start_auto_focus = self.get_command_object("startAutoFocus")
self.phi_motor_hwobj = self.get_object_by_role("phi")
self.phiz_motor_hwobj = self.get_object_by_role("phiz")
self.phiy_motor_hwobj = self.get_object_by_role("phiy")
self.zoom_motor_hwobj = self.get_object_by_role("zoom")
self.focus_motor_hwobj = self.get_object_by_role("focus")
self.sample_x_motor_hwobj = self.get_object_by_role("sampx")
self.sample_y_motor_hwobj = self.get_object_by_role("sampy")
if self.phi_motor_hwobj is not None:
self.connect(
self.phi_motor_hwobj, "stateChanged", self.phi_motor_state_changed
)
self.connect(self.phi_motor_hwobj, "valueChanged", self.phi_motor_moved)
else:
logging.getLogger("HWR").error("ALBAMiniDiff: Phi motor is not defined")
if self.phiz_motor_hwobj is not None:
self.connect(
self.phiz_motor_hwobj, "stateChanged", self.phiz_motor_state_changed
)
self.connect(self.phiz_motor_hwobj, "valueChanged", self.phiz_motor_moved)
else:
logging.getLogger("HWR").error("ALBAMiniDiff: Phiz motor is not defined")
if self.phiy_motor_hwobj is not None:
self.connect(
self.phiy_motor_hwobj, "stateChanged", self.phiy_motor_state_changed
)
self.connect(self.phiy_motor_hwobj, "valueChanged", self.phiy_motor_moved)
else:
logging.getLogger("HWR").error("ALBAMiniDiff: Phiy motor is not defined")
if self.zoom_motor_hwobj is not None:
self.connect(
self.zoom_motor_hwobj, "valueChanged", self.zoom_position_changed
)
self.connect(
self.zoom_motor_hwobj,
"predefinedPositionChanged",
self.zoom_motor_predefined_position_changed,
)
self.connect(
self.zoom_motor_hwobj, "stateChanged", self.zoom_motor_state_changed
)
else:
logging.getLogger("HWR").error("ALBAMiniDiff: Zoom motor is not defined")
if self.sample_x_motor_hwobj is not None:
self.connect(
self.sample_x_motor_hwobj,
"stateChanged",
self.sampleX_motor_state_changed,
)
self.connect(
self.sample_x_motor_hwobj, "valueChanged", self.sampleX_motor_moved
)
else:
logging.getLogger("HWR").error("ALBAMiniDiff: Sampx motor is not defined")
if self.sample_y_motor_hwobj is not None:
self.connect(
self.sample_y_motor_hwobj,
"stateChanged",
self.sampleY_motor_state_changed,
)
self.connect(
self.sample_y_motor_hwobj, "valueChanged", self.sampleY_motor_moved
)
else:
logging.getLogger("HWR").error("ALBAMiniDiff: Sampx motor is not defined")
if self.focus_motor_hwobj is not None:
self.connect(self.focus_motor_hwobj, "valueChanged", self.focus_motor_moved)
GenericDiffractometer.init(self)
queue_model_objects.CentredPosition.set_diffractometer_motor_names(
"phi", "phiy", "phiz", "sampx", "sampy", "kappa"
)
def get_pixels_per_mm(self):
self.update_zoom_calibration()
return GenericDiffractometer.get_pixels_per_mm(self)
def init(self):
self.calibration = self.getObjectByRole("calibration")
self.centring_hwobj = self.getObjectByRole("centring")
self.super_hwobj = self.getObjectByRole("beamline-supervisor")
if self.centring_hwobj is None:
logging.getLogger("HWR").debug("ALBAMinidiff: Centring math is not defined")
if self.super_hwobj is not None:
self.connect(
self.super_hwobj, "stateChanged", self.supervisor_state_changed
)
self.connect(
self.super_hwobj, "phaseChanged", self.supervisor_phase_changed
)
self.state_channel = self.getChannelObject("State")
self.connect(self.state_channel, "update", self.state_changed)
# This is not used
self.cmd_start_auto_focus = self.getCommandObject("startAutoFocus")
self.phi_motor_hwobj = self.getObjectByRole("phi")
self.phiz_motor_hwobj = self.getObjectByRole("phiz")
self.phiy_motor_hwobj = self.getObjectByRole("phiy")
self.zoom_motor_hwobj = self.getObjectByRole("zoom")
self.focus_motor_hwobj = self.getObjectByRole("focus")
self.sample_x_motor_hwobj = self.getObjectByRole("sampx")
self.sample_y_motor_hwobj = self.getObjectByRole("sampy")
if self.phi_motor_hwobj is not None:
self.connect(
self.phi_motor_hwobj, "stateChanged", self.phi_motor_state_changed
)
self.connect(self.phi_motor_hwobj, "positionChanged", self.phi_motor_moved)
else:
logging.getLogger("HWR").error("ALBAMiniDiff: Phi motor is not defined")
if self.phiz_motor_hwobj is not None:
self.connect(
self.phiz_motor_hwobj, "stateChanged", self.phiz_motor_state_changed
)
self.connect(
self.phiz_motor_hwobj, "positionChanged", self.phiz_motor_moved
)
else:
logging.getLogger("HWR").error("ALBAMiniDiff: Phiz motor is not defined")
if self.phiy_motor_hwobj is not None:
self.connect(
self.phiy_motor_hwobj, "stateChanged", self.phiy_motor_state_changed
)
self.connect(
self.phiy_motor_hwobj, "positionChanged", self.phiy_motor_moved
)
else:
logging.getLogger("HWR").error("ALBAMiniDiff: Phiy motor is not defined")
if self.zoom_motor_hwobj is not None:
self.connect(
self.zoom_motor_hwobj, "positionChanged", self.zoom_position_changed
)
self.connect(
self.zoom_motor_hwobj,
"predefinedPositionChanged",
self.zoom_motor_predefined_position_changed,
)
self.connect(
self.zoom_motor_hwobj, "stateChanged", self.zoom_motor_state_changed
)
else:
logging.getLogger("HWR").error("ALBAMiniDiff: Zoom motor is not defined")
if self.sample_x_motor_hwobj is not None:
self.connect(
self.sample_x_motor_hwobj,
"stateChanged",
self.sampleX_motor_state_changed,
)
self.connect(
self.sample_x_motor_hwobj, "positionChanged", self.sampleX_motor_moved
)
else:
logging.getLogger("HWR").error("ALBAMiniDiff: Sampx motor is not defined")
if self.sample_y_motor_hwobj is not None:
self.connect(
self.sample_y_motor_hwobj,
"stateChanged",
self.sampleY_motor_state_changed,
)
self.connect(
self.sample_y_motor_hwobj, "positionChanged", self.sampleY_motor_moved
)
else:
logging.getLogger("HWR").error("ALBAMiniDiff: Sampx motor is not defined")
if self.focus_motor_hwobj is not None:
self.connect(
self.focus_motor_hwobj, "positionChanged", self.focus_motor_moved
)
GenericDiffractometer.init(self)
queue_model_objects.CentredPosition.set_diffractometer_motor_names(
"phi", "phiy", "phiz", "sampx", "sampy", "kappa"
)
def init(self):
"""
Descript. :
"""
# self.image_width = 100
# self.image_height = 100
GenericDiffractometer.init(self)
self.x_calib = 0.000444
self.y_calib = 0.000446
self.last_centred_position = [318, 238]
self.pixels_per_mm_x = 1.0 / self.x_calib
self.pixels_per_mm_y = 1.0 / self.y_calib
self.beam_position = [318, 238]
self.current_phase = GenericDiffractometer.PHASE_CENTRING
self.cancel_centring_methods = {}
self.current_motor_positions = {
"phiy": 1.0,
"sampx": 0.0,
"sampy": -1.0,
"zoom": 8.53,
"focus": -0.42,
"phiz": 1.1,
"phi": 311.1,
"kappa": 11,
"kappa_phi": 22.0,
}
self.move_motors(self._get_random_centring_position())
self.current_state_dict = {}
self.centring_status = {"valid": False}
self.centring_time = 0
# self.image_width = 400
# self.image_height = 400
self.mount_mode = self.get_property("sample_mount_mode")
if self.mount_mode is None:
self.mount_mode = "manual"
self.equipment_ready()
self.connect(self.motor_hwobj_dict["phi"], "valueChanged",
self.phi_motor_moved)
self.connect(self.motor_hwobj_dict["phiy"], "valueChanged",
self.phiy_motor_moved)
self.connect(self.motor_hwobj_dict["phiz"], "valueChanged",
self.phiz_motor_moved)
self.connect(self.motor_hwobj_dict["kappa"], "valueChanged",
self.kappa_motor_moved)
self.connect(
self.motor_hwobj_dict["kappa_phi"],
"valueChanged",
self.kappa_phi_motor_moved,
)
self.connect(self.motor_hwobj_dict["sampx"], "valueChanged",
self.sampx_motor_moved)
self.connect(self.motor_hwobj_dict["sampy"], "valueChanged",
self.sampy_motor_moved)
def init(self):
GenericDiffractometer.init(self)
self.centring_status = {"valid": False}
self.chan_state = self.getChannelObject("State")
self.current_state = self.chan_state.getValue()
self.chan_state.connectSignal("update", self.state_changed)
self.chan_status = self.getChannelObject("Status")
self.chan_status.connectSignal("update", self.status_changed)
self.chan_calib_x = self.getChannelObject("CoaxCamScaleX")
self.chan_calib_y = self.getChannelObject("CoaxCamScaleY")
self.update_pixels_per_mm()
self.chan_head_type = self.getChannelObject("HeadType")
self.head_type = self.chan_head_type.getValue()
self.chan_current_phase = self.getChannelObject("CurrentPhase")
self.connect(self.chan_current_phase, "update",
self.current_phase_changed)
self.chan_fast_shutter_is_open = self.getChannelObject(
"FastShutterIsOpen")
self.chan_fast_shutter_is_open.connectSignal(
"update", self.fast_shutter_state_changed)
self.chan_scintillator_position = self.getChannelObject(
"ScintillatorPosition")
self.chan_capillary_position = self.getChannelObject(
"CapillaryPosition")
self.cmd_start_set_phase = self.getCommandObject("startSetPhase")
self.cmd_start_auto_focus = self.getCommandObject("startAutoFocus")
self.cmd_get_omega_scan_limits = self.getCommandObject(
"getOmegaMotorDynamicScanLimits")
self.cmd_save_centring_positions = self.getCommandObject(
"saveCentringPositions")
self.centring_hwobj = self.getObjectByRole("centring")
self.imaging_centring_hwobj = self.getObjectByRole("imaging-centring")
self.minikappa_correction_hwobj = self.getObjectByRole(
"minikappa_correction")
self.detector_distance_motor_hwobj = self.getObjectByRole(
"detector_distance_motor")
self.zoom_motor_hwobj = self.getObjectByRole("zoom")
self.connect(self.zoom_motor_hwobj, "positionChanged",
self.zoom_position_changed)
self.connect(
self.zoom_motor_hwobj,
"predefinedPositionChanged",
self.zoom_motor_predefined_position_changed,
)
self.connect(self.motor_hwobj_dict["phi"], "positionChanged",
self.phi_motor_moved)
self.connect(self.motor_hwobj_dict["phiy"], "positionChanged",
self.phiy_motor_moved)
self.connect(self.motor_hwobj_dict["phiz"], "positionChanged",
self.phiz_motor_moved)
self.connect(self.motor_hwobj_dict["kappa"], "positionChanged",
self.kappa_motor_moved)
self.connect(
self.motor_hwobj_dict["kappa_phi"],
"positionChanged",
self.kappa_phi_motor_moved,
)
self.connect(self.motor_hwobj_dict["sampx"], "positionChanged",
self.sampx_motor_moved)
self.connect(self.motor_hwobj_dict["sampy"], "positionChanged",
self.sampy_motor_moved)
self.omega_reference_par = eval(self.getProperty("omega_reference"))
self.omega_reference_motor = self.getObjectByRole(
self.omega_reference_par["motor_name"])
self.connect(
self.omega_reference_motor,
"positionChanged",
self.omega_reference_motor_moved,
)
# self.use_sc = self.getProperty("use_sample_changer")
self.imaging_pixels_per_mm = [1, 1]
self.centring_methods[
EMBLMiniDiff.CENTRING_METHOD_IMAGING] = self.start_imaging_centring
self.centring_methods[
EMBLMiniDiff.
CENTRING_METHOD_IMAGING_N] = self.start_imaging_centring_n
def __init__(self, *args):
"""
Descript. :
"""
self.beam_position = [680, 512]
GenericDiffractometer.__init__(self, *args)
def init(self):
"""
Description:
"""
GenericDiffractometer.init(self)
self.centring_status = {"valid": False}
self.chan_state = self.getChannelObject("State")
self.chan_status = self.getChannelObject("Status")
self.current_state = self.chan_state.getValue()
self.current_status = self.chan_status.getValue()
self.chan_state.connectSignal("update", self.state_changed)
self.chan_status.connectSignal("update", self.status_changed)
self.chan_calib_x = self.getChannelObject("CoaxCamScaleX")
self.chan_calib_y = self.getChannelObject("CoaxCamScaleY")
self.update_pixels_per_mm()
self.chan_head_type = self.getChannelObject("HeadType")
self.head_type = self.chan_head_type.getValue()
self.chan_current_phase = self.getChannelObject("CurrentPhase")
self.connect(self.chan_current_phase, "update", self.current_phase_changed)
self.chan_fast_shutter_is_open = self.getChannelObject("FastShutterIsOpen")
self.chan_fast_shutter_is_open.connectSignal(
"update", self.fast_shutter_state_changed
)
self.chan_scintillator_position = self.getChannelObject("ScintillatorPosition")
self.chan_capillary_position = self.getChannelObject("CapillaryPosition")
self.cmd_start_set_phase = self.getCommandObject("startSetPhase")
self.cmd_start_auto_focus = self.getCommandObject("startAutoFocus")
self.cmd_get_omega_scan_limits = self.getCommandObject(
"getOmegaMotorDynamicScanLimits"
)
self.cmd_save_centring_positions = self.getCommandObject(
"saveCentringPositions"
)
self.centring_hwobj = self.getObjectByRole("centring")
self.minikappa_correction_hwobj = self.getObjectByRole("minikappa_correction")
self.detector_distance_motor_hwobj = self.getObjectByRole(
"detector_distance_motor"
)
self.zoom_motor_hwobj = self.getObjectByRole("zoom")
self.connect(
self.zoom_motor_hwobj, "positionChanged", self.zoom_position_changed
)
self.connect(
self.zoom_motor_hwobj,
"predefinedPositionChanged",
self.zoom_motor_predefined_position_changed,
)
self.connect(
self.motor_hwobj_dict["phi"], "positionChanged", self.phi_motor_moved
)
self.connect(
self.motor_hwobj_dict["phiy"], "positionChanged", self.phiy_motor_moved
)
self.connect(
self.motor_hwobj_dict["phiz"], "positionChanged", self.phiz_motor_moved
)
self.connect(
self.motor_hwobj_dict["kappa"], "positionChanged", self.kappa_motor_moved
)
self.connect(
self.motor_hwobj_dict["kappa_phi"],
"positionChanged",
self.kappa_phi_motor_moved,
)
self.connect(
self.motor_hwobj_dict["sampx"], "positionChanged", self.sampx_motor_moved
)
self.connect(
self.motor_hwobj_dict["sampy"], "positionChanged", self.sampy_motor_moved
)
self.omega_reference_par = eval(self.getProperty("omega_reference"))
self.omega_reference_motor = self.getObjectByRole(
self.omega_reference_par["motor_name"]
)
self.connect(
self.omega_reference_motor,
"positionChanged",
self.omega_reference_motor_moved,
)
def __init__(self, *args):
"""
Description:
"""
GenericDiffractometer.__init__(self, *args)
def __init__(self, *args):
GenericDiffractometer.__init__(self, *args)
self.centring_hwobj = None
def init(self):
self.calibration = self.getObjectByRole("calibration")
self.centring_hwobj = self.getObjectByRole("centring")
if self.centring_hwobj is None:
logging.getLogger("HWR").debug("EMBLMinidiff: Centring math is not defined")
self.cmd_start_auto_focus = self.getCommandObject("startAutoFocus")
self.phi_motor_hwobj = self.getObjectByRole("phi")
self.phiz_motor_hwobj = self.getObjectByRole("phiz")
self.phiy_motor_hwobj = self.getObjectByRole("phiy")
self.zoom_motor_hwobj = self.getObjectByRole("zoom")
self.focus_motor_hwobj = self.getObjectByRole("focus")
self.sample_x_motor_hwobj = self.getObjectByRole("sampx")
self.sample_y_motor_hwobj = self.getObjectByRole("sampy")
if self.phi_motor_hwobj is not None:
self.connect(
self.phi_motor_hwobj, "stateChanged", self.phi_motor_state_changed
)
self.connect(self.phi_motor_hwobj, "positionChanged", self.phi_motor_moved)
else:
logging.getLogger("HWR").error("EMBLMiniDiff: Phi motor is not defined")
if self.phiz_motor_hwobj is not None:
self.connect(
self.phiz_motor_hwobj, "stateChanged", self.phiz_motor_state_changed
)
self.connect(
self.phiz_motor_hwobj, "positionChanged", self.phiz_motor_moved
)
else:
logging.getLogger("HWR").error("EMBLMiniDiff: Phiz motor is not defined")
if self.phiy_motor_hwobj is not None:
self.connect(
self.phiy_motor_hwobj, "stateChanged", self.phiy_motor_state_changed
)
self.connect(
self.phiy_motor_hwobj, "positionChanged", self.phiy_motor_moved
)
else:
logging.getLogger("HWR").error("EMBLMiniDiff: Phiy motor is not defined")
if self.zoom_motor_hwobj is not None:
self.connect(
self.zoom_motor_hwobj, "positionChanged", self.zoom_position_changed
)
self.connect(
self.zoom_motor_hwobj,
"predefinedPositionChanged",
self.zoom_motor_predefined_position_changed,
)
self.connect(
self.zoom_motor_hwobj, "stateChanged", self.zoom_motor_state_changed
)
else:
logging.getLogger("HWR").error("EMBLMiniDiff: Zoom motor is not defined")
if self.sample_x_motor_hwobj is not None:
self.connect(
self.sample_x_motor_hwobj,
"stateChanged",
self.sampleX_motor_state_changed,
)
self.connect(
self.sample_x_motor_hwobj, "positionChanged", self.sampleX_motor_moved
)
else:
logging.getLogger("HWR").error("EMBLMiniDiff: Sampx motor is not defined")
if self.sample_y_motor_hwobj is not None:
self.connect(
self.sample_y_motor_hwobj,
"stateChanged",
self.sampleY_motor_state_changed,
)
self.connect(
self.sample_y_motor_hwobj, "positionChanged", self.sampleY_motor_moved
)
else:
logging.getLogger("HWR").error("EMBLMiniDiff: Sampx motor is not defined")
if self.focus_motor_hwobj is not None:
self.connect(
self.focus_motor_hwobj, "positionChanged", self.focus_motor_moved
)
GenericDiffractometer.init(self)
def init(self):
"""
Descript. :
"""
# self.image_width = 100
# self.image_height = 100
GenericDiffractometer.init(self)
# Bzoom: 1.86 um/pixel (or 0.00186 mm/pixel) at minimum zoom
self.x_calib = 0.00186
self.y_calib = 0.00186
self.last_centred_position = [318, 238]
self.pixels_per_mm_x = 1.0 / self.x_calib
self.pixels_per_mm_y = 1.0 / self.y_calib
if "zoom" not in self.motor_hwobj_dict.keys():
self.motor_hwobj_dict["zoom"] = self.getObjectByRole("zoom")
calibration_x = self.zoom.getProperty("mm_per_pixel_x")
calibration_y = self.zoom.getProperty("mm_per_pixel_y")
self.zoom_calibration_x = ast.literal_eval(calibration_x)
self.zoom_calibration_y = ast.literal_eval(calibration_y)
self.beam_position = [318, 238]
self.current_phase = GenericDiffractometer.PHASE_CENTRING
self.cancel_centring_methods = {}
self.current_motor_positions = {
"phiy": 1.0,
"sampx": 0.0,
"sampy": -1.0,
"zoom": 8.53,
"focus": -0.42,
"phiz": 1.1,
"phi": 311.1,
"kappa": 11,
"kappa_phi": 22.0,
}
#self.move_motors(self._get_random_centring_position())
self.current_state_dict = {}
self.centring_status = {"valid": False}
self.centring_time = 0
# self.image_width = 400
# self.image_height = 400
self.mount_mode = self.getProperty("sample_mount_mode")
if self.mount_mode is None:
self.mount_mode = "manual"
self.equipment_ready()
# TODO FFS get this cleared up - one function, one name
self.getPositions = self.get_positions
#self.moveMotors = self.move_motors
self.connect(self.motor_hwobj_dict["phi"], "positionChanged",
self.phi_motor_moved)
self.connect(self.motor_hwobj_dict["phiy"], "positionChanged",
self.phiy_motor_moved)
self.connect(self.motor_hwobj_dict["phiz"], "positionChanged",
self.phiz_motor_moved)
self.connect(self.motor_hwobj_dict["kappa"], "positionChanged",
self.kappa_motor_moved)
self.connect(
self.motor_hwobj_dict["kappa_phi"],
"positionChanged",
self.kappa_phi_motor_moved,
)
self.connect(self.motor_hwobj_dict["sampx"], "positionChanged",
self.sampx_motor_moved)
self.connect(self.motor_hwobj_dict["sampy"], "positionChanged",
self.sampy_motor_moved)
def __init__(self, *args):
"""
Descript. :
"""
GenericDiffractometer.__init__(self, *args)
def get_pixels_per_mm(self):
self.update_zoom_calibration()
return GenericDiffractometer.get_pixels_per_mm(self)
def init(self):
GenericDiffractometer.init(self)
self.front_light = self.get_object_by_role("frontlight")
self.back_light = self.get_object_by_role("backlight")
self.back_light_switch = self.get_object_by_role("backlightswitch")
self.front_light_switch = self.get_object_by_role("frontlightswitch")
self.centring_hwobj = self.get_object_by_role("centring")
if self.centring_hwobj is None:
logging.getLogger("HWR").debug(
"EMBLMinidiff: Centring math is not defined")
self.phi_motor_hwobj = self.motor_hwobj_dict["phi"]
self.phiz_motor_hwobj = self.motor_hwobj_dict["phiz"]
self.phiy_motor_hwobj = self.motor_hwobj_dict["phiy"]
self.zoom_motor_hwobj = self.motor_hwobj_dict["zoom"]
self.focus_motor_hwobj = self.motor_hwobj_dict["focus"]
self.sample_x_motor_hwobj = self.motor_hwobj_dict["sampx"]
self.sample_y_motor_hwobj = self.motor_hwobj_dict["sampy"]
try:
self.kappa_motor_hwobj = self.motor_hwobj_dict["kappa"]
except Exception:
self.kappa_motor_hwobj = None
try:
self.kappa_phi_motor_hwobj = self.motor_hwobj_dict["kappa_phi"]
except Exception:
self.kappa_phi_motor_hwobj = None
self.cent_vertical_pseudo_motor = None
try:
self.cent_vertical_pseudo_motor = self.add_channel(
{
"type": "exporter",
"name": "CentringTableVerticalPositionPosition"
},
"CentringTableVerticalPosition",
)
if self.cent_vertical_pseudo_motor is not None:
self.connect(self.cent_vertcial_pseudo_motor, "update",
self.centring_motor_moved)
except Exception:
logging.getLogger("HWR").warning(
"Cannot initialize CentringTableVerticalPosition")
try:
use_sc = self.get_property("use_sc")
self.set_use_sc(use_sc)
except Exception:
logging.getLogger("HWR").debug("Cannot set sc mode, use_sc: ",
str(use_sc))
try:
self.zoom_centre = eval(self.get_property("zoom_centre"))
zoom = HWR.beamline.sample_view.camera.get_image_zoom()
if zoom is not None:
self.zoom_centre["x"] = self.zoom_centre["x"] * zoom
self.zoom_centre["y"] = self.zoom_centre["y"] * zoom
self.beam_position = [self.zoom_centre["x"], self.zoom_centre["y"]]
HWR.beamline.beam.set_beam_position(self.beam_position)
except Exception:
self.zoom_centre = {"x": 0, "y": 0}
logging.getLogger("HWR").warning("BIOMAXMD3: " +
"zoom centre not configured")
def init(self):
"""
Descript. :
"""
self.image_width = 100
self.image_height = 100
GenericDiffractometer.init(self)
self.x_calib = 0.000444
self.y_calib = 0.000446
self.last_centred_position = [318, 238]
self.pixels_per_mm_x = 1.0 / self.x_calib
self.pixels_per_mm_y = 1.0 / self.y_calib
self.beam_position = [318, 238]
self.current_phase = GenericDiffractometer.PHASE_CENTRING
self.cancel_centring_methods = {}
self.current_motor_positions = {
"phiy": 1.0,
"sampx": 0.0,
"sampy": -1.0,
"zoom": 8.53,
"focus": -0.42,
"phiz": 1.1,
"phi": 311.1,
"kappa": 11,
"kappa_phi": 22.0,
}
self.move_motors(self._get_random_centring_position())
self.current_state_dict = {}
self.centring_status = {"valid": False}
self.centring_time = 0
self.image_width = 400
self.image_height = 400
self.mount_mode = self.getProperty("sample_mount_mode")
if self.mount_mode is None:
self.mount_mode = "manual"
self.equipment_ready()
# TODO FFS get this cleared up - one function, one name
self.getPositions = self.get_positions
self.moveMotors = self.move_motors
self.connect(
self.motor_hwobj_dict["phi"], "positionChanged", self.phi_motor_moved
)
self.connect(
self.motor_hwobj_dict["phiy"], "positionChanged", self.phiy_motor_moved
)
self.connect(
self.motor_hwobj_dict["phiz"], "positionChanged", self.phiz_motor_moved
)
self.connect(
self.motor_hwobj_dict["kappa"], "positionChanged", self.kappa_motor_moved
)
self.connect(
self.motor_hwobj_dict["kappa_phi"],
"positionChanged",
self.kappa_phi_motor_moved,
)
self.connect(
self.motor_hwobj_dict["sampx"], "positionChanged", self.sampx_motor_moved
)
self.connect(
self.motor_hwobj_dict["sampy"], "positionChanged", self.sampy_motor_moved
)
