def stageData(self, m):
y0 = float(self.keywords.get(
"y0", 1994.)) # [yr] beginning year to include in analysis
yf = float(self.keywords.get(
"yf", 2007.)) # [yr] end year to include in analysis
obs = Variable(filename=self.source,
variable_name=self.variable,
alternate_vars=self.alternate_vars)
#if obs.time is None: raise il.NotTemporalVariable()
self.pruneRegions(obs)
mod = m.extractTimeSeries(self.variable,
alt_vars=self.alternate_vars,
expression=self.derived,
initial_time=(y0 - 1850) * 365,
final_time=(yf - 1850) * 365,
lats=None if obs.spatial else obs.lat,
lons=None if obs.spatial else obs.lon)
# remove the time dimension
obs = obs.integrateInTime(mean=True)
mod = mod.integrateInTime(mean=True)
return obs, mod
def stageData(self, m):
energy_threshold = float(self.keywords.get("energy_threshold", 10))
# Handle obs data
dn_obs = Variable(filename=self.source.replace("albedo", "rsds"),
variable_name="rsds")
up_obs = Variable(filename=self.source.replace("albedo", "rsus"),
variable_name="rsus")
dn_obs, up_obs, obs = _albedo(dn_obs, up_obs, self.variable,
energy_threshold)
# Prune out uncovered regions
if obs.time is None: raise il.NotTemporalVariable()
self.pruneRegions(obs)
# Handle model data
dn_mod = m.extractTimeSeries("rsds",
initial_time=obs.time_bnds[0, 0],
final_time=obs.time_bnds[-1, 1],
lats=None if obs.spatial else obs.lat,
lons=None if obs.spatial else obs.lon)
up_mod = m.extractTimeSeries("rsus",
initial_time=obs.time_bnds[0, 0],
final_time=obs.time_bnds[-1, 1],
lats=None if obs.spatial else obs.lat,
lons=None if obs.spatial else obs.lon)
dn_mod, up_mod, mod = _albedo(dn_mod, up_mod, self.variable,
energy_threshold)
# Make variables comparable
obs, mod = il.MakeComparable(obs,
mod,
mask_ref=True,
clip_ref=True,
logstring="[%s][%s]" %
(self.longname, m.name))
dn_obs, dn_mod = il.MakeComparable(dn_obs,
dn_mod,
mask_ref=True,
clip_ref=True,
logstring="[%s][%s]" %
(self.longname, m.name))
up_obs, up_mod = il.MakeComparable(up_obs,
up_mod,
mask_ref=True,
clip_ref=True,
logstring="[%s][%s]" %
(self.longname, m.name))
# Compute the mean albedo
dn_obs = dn_obs.integrateInTime(mean=True)
up_obs = up_obs.integrateInTime(mean=True)
np.seterr(over='ignore', under='ignore')
obs_timeint = np.ma.masked_array(up_obs.data / dn_obs.data,
mask=(dn_obs.data.mask +
up_obs.data.mask))
np.seterr(over='warn', under='warn')
obs_timeint = Variable(name=self.variable,
unit="1",
data=obs_timeint,
lat=dn_obs.lat,
lat_bnds=dn_obs.lat_bnds,
lon=dn_obs.lon,
lon_bnds=dn_obs.lon_bnds)
dn_mod = dn_mod.integrateInTime(mean=True)
up_mod = up_mod.integrateInTime(mean=True)
np.seterr(over='ignore', under='ignore')
mod_timeint = np.ma.masked_array(up_mod.data / dn_mod.data,
mask=(dn_mod.data.mask +
up_mod.data.mask))
np.seterr(over='warn', under='warn')
mod_timeint = Variable(name=self.variable,
unit="1",
data=mod_timeint,
lat=dn_mod.lat,
lat_bnds=dn_mod.lat_bnds,
lon=dn_mod.lon,
lon_bnds=dn_mod.lon_bnds)
return obs, mod, obs_timeint, mod_timeint
def getDiurnalDataForGivenYear(var, year):
"""
"""
# Get this year's data, make sure there is enough
spd = int(round(1 / np.diff(var.time_bnds, axis=1).mean()))
datum = cftime.date2num(cftime.datetime(year, 1, 1), "days since 1850-1-1")
ind = np.where(year == var.year)[0]
t = var.time[ind] - datum
tb = var.time_bnds[ind] - datum
data = var.data[ind, 0]
# Reshape the data
begin = np.argmin(tb[:(spd - 1), 0] % 1)
end = begin + int(t[begin:].size / float(spd) - 1) * spd
shift = int(round((var.tmax - 12) / (var.dt * 24)))
begin += shift
end += shift
shp = (-1, spd) + data.shape[1:]
data = data[begin:end].reshape(shp)
t = t[begin:end].reshape(shp).mean(axis=1)
# Diurnal magnitude
mag = Variable(name="mag%d" % year,
unit=var.unit,
time=t,
data=data.max(axis=1) - data.min(axis=1))
# Some of the tower data is 'intelligently' masked which leads to
# too much of the data being removed to use my change-detection
# algorithm to determine season begin/end.
mag.skip = False
if mag.data.mask.all(): raise NotEnoughDataInYear # if year is all masked
dmag = (mag.data.max() - mag.data.min())
if dmag < 1e-14:
raise NotEnoughDataInYear # if diurnal mag has no amplitude
# Some mask out off seasons, season is taken to be all the data
begin_day, end_day = mag.time[mag.data.mask == False][[
0, -1
]] # begin/end of the mask data
if ((begin_day < 2 and end_day < 363)
or (begin_day > 2 and end_day > 363)):
# this is likely a dataset which is a partial year
raise NotEnoughDataInYear
elif (begin_day > 2 and end_day < 363):
# this is likely a dataset that masks out off-seasons
season = np.asarray([begin_day, end_day])
else:
season = findSeasonalTiming(mag.time, mag.data)
centroid = findSeasonalCentroid(mag.time, mag.data)
mag.season = season
mag.centroid = centroid
# Mask out off season
mask = (t < season[0]) + (t > season[1])
data = np.ma.masked_array(data,
mask=mask[:, np.newaxis] *
np.ones(data.shape[1], dtype=bool))
# Mean seasonal diurnal cycle
uncert = np.zeros((data.shape[1], 2))
for i in range(data.shape[1]):
d = data[:, i].compressed()
if d.size == 0: continue
uncert[i, :] = np.percentile(d, [10, 90])
day = np.linspace(0, 1, spd + 1)
day = 0.5 * (day[:-1] + day[1:])
with np.errstate(under='ignore', over='ignore'):
cycle = Variable(name="cycle%d" % year,
unit=var.unit,
time=day,
data=data.mean(axis=0),
data_bnds=uncert)
# Mean seasonal uptake
uptake = Variable(unit=var.unit,
time=var.time[ind] - datum,
time_bnds=var.time_bnds[ind] - datum,
data=var.data[ind, 0])
uptake.data = np.ma.masked_array(uptake.data,
mask=((uptake.time < season[0]) +
(uptake.time > season[1])))
uptake = uptake.integrateInTime(mean=True)
cycle.uptake = uptake.data
# Timing of peak seasonal cycle, could be a maximum or minimum,
# check second derivative of a best-fit parabola to the daytime
# data.
begin = int(spd / 4)
end = int(spd * 3 / 4)
p = np.polyfit(cycle.time[begin:end], cycle.data[begin:end], 2)
if p[0] < 0:
cycle.peak = day[cycle.data.argmax()] * 24
else:
cycle.peak = day[cycle.data.argmin()] * 24
return mag, cycle
def stageData(self, m):
energy_threshold = float(self.keywords.get("energy_threshold", 20.))
# Handle obs data
sh_obs = Variable(filename=os.path.join(os.environ["ILAMB_ROOT"],
"DATA/sh/GBAF/sh_0.5x0.5.nc"),
variable_name="sh")
le_obs = Variable(filename=os.path.join(os.environ["ILAMB_ROOT"],
"DATA/le/GBAF/le_0.5x0.5.nc"),
variable_name="le")
sh_obs, le_obs, obs = _evapfrac(sh_obs, le_obs, self.variable,
energy_threshold)
# Prune out uncovered regions
if obs.time is None: raise il.NotTemporalVariable()
self.pruneRegions(obs)
# Handle model data
sh_mod = m.extractTimeSeries("hfss",
initial_time=obs.time_bnds[0, 0],
final_time=obs.time_bnds[-1, 1],
lats=None if obs.spatial else obs.lat,
lons=None if obs.spatial else obs.lon)
le_mod = m.extractTimeSeries("hfls",
initial_time=obs.time_bnds[0, 0],
final_time=obs.time_bnds[-1, 1],
lats=None if obs.spatial else obs.lat,
lons=None if obs.spatial else obs.lon)
sh_mod, le_mod, mod = _evapfrac(sh_mod, le_mod, self.variable,
energy_threshold)
# Make variables comparable
obs, mod = il.MakeComparable(obs,
mod,
mask_ref=True,
clip_ref=True,
logstring="[%s][%s]" %
(self.longname, m.name))
sh_obs, sh_mod = il.MakeComparable(sh_obs,
sh_mod,
mask_ref=True,
clip_ref=True,
logstring="[%s][%s]" %
(self.longname, m.name))
le_obs, le_mod = il.MakeComparable(le_obs,
le_mod,
mask_ref=True,
clip_ref=True,
logstring="[%s][%s]" %
(self.longname, m.name))
# Compute the mean ef
sh_obs = sh_obs.integrateInTime(mean=True)
le_obs = le_obs.integrateInTime(mean=True)
np.seterr(over='ignore', under='ignore')
obs_timeint = np.ma.masked_array(
le_obs.data / (le_obs.data + sh_obs.data),
mask=(sh_obs.data.mask + le_obs.data.mask))
np.seterr(over='warn', under='warn')
obs_timeint = Variable(name=self.variable,
unit="1",
data=obs_timeint,
lat=sh_obs.lat,
lat_bnds=sh_obs.lat_bnds,
lon=sh_obs.lon,
lon_bnds=sh_obs.lon_bnds)
sh_mod = sh_mod.integrateInTime(mean=True)
le_mod = le_mod.integrateInTime(mean=True)
np.seterr(over='ignore', under='ignore')
mod_timeint = np.ma.masked_array(
le_mod.data / (le_mod.data + sh_mod.data),
mask=(sh_mod.data.mask + le_mod.data.mask))
np.seterr(over='warn', under='warn')
mod_timeint = Variable(name=self.variable,
unit="1",
data=mod_timeint,
lat=sh_mod.lat,
lat_bnds=sh_mod.lat_bnds,
lon=sh_mod.lon,
lon_bnds=sh_mod.lon_bnds)
return obs, mod, obs_timeint, mod_timeint