def TrajectorySliderView(traj, frame=0, **kwargs):
"""IPython notebook widget for viewing trajectories in the browser with
an interactiver slider.
Parameters
----------
traj : Trajectory
Trajectory for which you want the viewer.
frame : int, default=0
Frame to set the slider to by default
kwargs : string
See TrajectoryView for all available options.
See Also
--------
TrajectoryView: IPython notebook widget for displaying trajectories in the
browser with WebGL.
"""
widget = TrajectoryView(traj, frame=frame, **kwargs)
def slide(frame):
widget.frame = frame
s = IntSlider(min=0, max=traj.n_frames - 1, value=frame)
slider = interactive(slide, frame=s)
container = Box()
container.children = [widget, slider]
return container
def show_progressbar(bar, show_eta=True, force=False):
""" shows given bar either using an ipython widget, if in
interactive session or simply use the string format of it and print it
to stdout.
Parameters
----------
bar : instance of pyemma.util.progressbar.ProgressBar
show_eta : bool (optional)
"""
currtime = time.time()
if bar.lastupdate is not None and not force:
dtlastupdate = currtime - bar.lastupdate
else:
dtlastupdate = 9999
#if not (str(config['show_progress_bars']) == 'True' and __is_tty_or_interactive_session() and dtlastupdate > 0.5):
if not (__is_tty_or_interactive_session() and dtlastupdate > 0.5):
return
bar.lastupdate = currtime
# note: this check ensures we have IPython.display and so on.
if ipython_notebook_session:
# create IPython widgets on first call
if not hasattr(bar, 'widget'):
box = Box()
text = Text()
progress_widget = IntProgress()
box.children = [text, progress_widget]
bar.widget = box
widget = box
# make it visible once
display(box)
# update css for a more compact view
progress_widget._css = [
("div", "margin-top", "0px")
]
progress_widget.height = "8px"
else:
widget = bar.widget
# update widgets slider value and description text
desc = bar.description
desc += ':\t({}/{})'.format(bar.numerator, bar.denominator)
if show_eta:
desc += ':\tETA:' + bar._generate_eta(bar._eta.eta_seconds)
assert isinstance(widget.children[0], Text)
assert isinstance(widget.children[1], IntProgress)
widget.children[0].placeholder = desc
widget.children[1].value = bar.percent
else:
sys.stdout.write("\r" + str(bar))
sys.stdout.flush()
def show_progressbar(bar, show_eta=True, force=False):
""" shows given bar either using an ipython widget, if in
interactive session or simply use the string format of it and print it
to stdout.
Parameters
----------
bar : instance of pyemma.util.progressbar.ProgressBar
show_eta : bool (optional)
"""
currtime = time.time()
if bar.lastupdate is not None and not force:
dtlastupdate = currtime - bar.lastupdate
else:
dtlastupdate = 9999
#if not (str(config['show_progress_bars']) == 'True' and __is_tty_or_interactive_session() and dtlastupdate > 0.5):
if not (__is_tty_or_interactive_session() and dtlastupdate > 0.5):
return
bar.lastupdate = currtime
# note: this check ensures we have IPython.display and so on.
if ipython_notebook_session:
# create IPython widgets on first call
if not hasattr(bar, 'widget'):
box = Box()
text = Text()
progress_widget = IntProgress()
box.children = [text, progress_widget]
bar.widget = box
widget = box
# make it visible once
display(box)
# update css for a more compact view
progress_widget._css = [("div", "margin-top", "0px")]
progress_widget.height = "8px"
else:
widget = bar.widget
# update widgets slider value and description text
desc = bar.description
desc += ':\t({}/{})'.format(bar.numerator, bar.denominator)
if show_eta:
desc += ':\tETA:' + bar._generate_eta(bar._eta.eta_seconds)
assert isinstance(widget.children[0], Text)
assert isinstance(widget.children[1], IntProgress)
widget.children[0].placeholder = desc
widget.children[1].value = bar.percent
else:
sys.stdout.write("\r" + str(bar))
sys.stdout.flush()
def show_progressbar(bar, show_eta=True):
""" shows given bar either using an ipython widget, if in
interactive session or simply use the string format of it and print it
to stdout.
Parameters
----------
bar : instance of pyemma.util.progressbar.ProgressBar
show_eta : bool (optional)
"""
if not (str(config['show_progress_bars']) == 'True' and
is_interactive_session):
return
# note: this check ensures we have IPython.display and so on.
if ipython_notebook_session and isinstance(bar, ProgressBar):
with warnings.catch_warnings():
warnings.simplefilter('ignore', DeprecationWarning)
# create IPython widgets on first call
if not hasattr(bar, 'widget'):
box = Box()
text = Text()
progress_widget = IntProgress()
box.children = [text, progress_widget]
bar.widget = box
widget = box
# make it visible once
display(box)
# box.visible=True
# update css for a more compact view
progress_widget._css = [
("div", "margin-top", "0px")
]
progress_widget.height = "8px"
else:
widget = bar.widget
# update widgets slider value and description text
desc = bar.description
if show_eta:
desc += ':\tETA:' + bar._generate_eta(bar._eta.eta_seconds)
assert isinstance(widget.children[0], Text)
assert isinstance(widget.children[1], IntProgress)
widget.children[0].placeholder = desc
widget.children[1].value = bar.percent
else:
sys.stdout.write("\r" + str(bar))
sys.stdout.flush()
def _repr_html_(self):
box = Box()
box.children = [self.value_text, self.vary_checkbox,
self.min_text, self.min_checkbox,
self.max_text, self.max_checkbox]
display(box)
box.add_class('hbox')
def _repr_html_(self):
display(self.models_menu)
button_box = Box()
button_box.children = [self.fit_button, self.guess_button]
display(button_box)
button_box.add_class('hbox')
for pw in self.param_widgets:
display(pw)
self.plot()
def interactive(__interact_f, **kwargs):
"""Build a group of widgets to interact with a function."""
f = __interact_f
co = kwargs.pop('clear_output', True)
kwargs_widgets = []
container = Box()
container.result = None
container.args = []
container.kwargs = dict()
kwargs = kwargs.copy()
new_kwargs = _find_abbreviations(f, kwargs)
# Before we proceed, let's make sure that the user has passed a set of args+kwargs
# that will lead to a valid call of the function. This protects against unspecified
# and doubly-specified arguments.
getcallargs(f, **{n: v for n, v, _ in new_kwargs})
# Now build the widgets from the abbreviations.
kwargs_widgets.extend(_widgets_from_abbreviations(new_kwargs))
# This has to be done as an assignment, not using container.children.append,
# so that traitlets notices the update. We skip any objects (such as fixed) that
# are not DOMWidgets.
c = [w for w in kwargs_widgets if isinstance(w, DOMWidget)]
container.children = c
# Build the callback
def call_f(name, old, new):
container.kwargs = {}
for widget in kwargs_widgets:
value = widget.value
container.kwargs[widget.description] = value
if co:
clear_output(wait=True)
try:
container.result = f(**container.kwargs)
except Exception as e:
ip = get_ipython()
if ip is None:
container.log.warn("Exception in interact callback: %s",
e,
exc_info=True)
else:
ip.showtraceback()
# Wire up the widgets
for widget in kwargs_widgets:
widget.on_trait_change(call_f, 'value')
container.on_displayed(lambda _: call_f(None, None, None))
return container
def interactive(__interact_f, **kwargs):
"""Build a group of widgets to interact with a function."""
f = __interact_f
co = kwargs.pop('clear_output', True)
kwargs_widgets = []
container = Box()
container.result = None
container.args = []
container.kwargs = dict()
kwargs = kwargs.copy()
new_kwargs = _find_abbreviations(f, kwargs)
# Before we proceed, let's make sure that the user has passed a set of args+kwargs
# that will lead to a valid call of the function. This protects against unspecified
# and doubly-specified arguments.
getcallargs(f, **{n:v for n,v,_ in new_kwargs})
# Now build the widgets from the abbreviations.
kwargs_widgets.extend(_widgets_from_abbreviations(new_kwargs))
# This has to be done as an assignment, not using container.children.append,
# so that traitlets notices the update. We skip any objects (such as fixed) that
# are not DOMWidgets.
c = [w for w in kwargs_widgets if isinstance(w, DOMWidget)]
container.children = c
# Build the callback
def call_f(name, old, new):
container.kwargs = {}
for widget in kwargs_widgets:
value = widget.value
container.kwargs[widget.description] = value
if co:
clear_output(wait=True)
try:
container.result = f(**container.kwargs)
except Exception as e:
ip = get_ipython()
if ip is None:
container.log.warn("Exception in interact callback: %s", e, exc_info=True)
else:
ip.showtraceback()
# Wire up the widgets
for widget in kwargs_widgets:
widget.on_trait_change(call_f, 'value')
container.on_displayed(lambda _: call_f(None, None, None))
return container
def __attached_to_ipy_notebook():
# first determine which IPython version we have (eg. ipywidgets or ipy3 deprecated,
# then try to instanciate a widget to determine if we're interactive (raises, if not).
ipy_widget_version = __ipy_widget_version()
if ipy_widget_version is None:
return False
if ipy_widget_version == 4:
from ipywidgets import Box
elif ipy_widget_version == 3:
from IPython.html.widgets import Box
# FIXME: this unfortunately does not raise if frontend is QT...
try:
Box()
except:
return False
else:
return True
def interactive(__interact_f, **kwargs):
"""
Builds a group of interactive widgets tied to a function and places the
group into a Box container.
Returns
-------
container : a Box instance containing multiple widgets
Parameters
----------
__interact_f : function
The function to which the interactive widgets are tied. The **kwargs
should match the function signature.
**kwargs : various, optional
An interactive widget is created for each keyword argument that is a
valid widget abbreviation.
"""
f = __interact_f
co = kwargs.pop('clear_output', True)
manual = kwargs.pop('__manual', False)
kwargs_widgets = []
container = Box(_dom_classes=['widget-interact'])
container.result = None
container.args = []
container.kwargs = dict()
kwargs = kwargs.copy()
new_kwargs = _find_abbreviations(f, kwargs)
# Before we proceed, let's make sure that the user has passed a set of args+kwargs
# that will lead to a valid call of the function. This protects against unspecified
# and doubly-specified arguments.
getcallargs(f, **{n: v for n, v, _ in new_kwargs})
# Now build the widgets from the abbreviations.
kwargs_widgets.extend(_widgets_from_abbreviations(new_kwargs))
# This has to be done as an assignment, not using container.children.append,
# so that traitlets notices the update. We skip any objects (such as fixed) that
# are not DOMWidgets.
c = [w for w in kwargs_widgets if isinstance(w, DOMWidget)]
# If we are only to run the function on demand, add a button to request this
if manual:
manual_button = Button(description="Run %s" % f.__name__)
c.append(manual_button)
container.children = c
# Build the callback
def call_f(name=None, old=None, new=None):
container.kwargs = {}
for widget in kwargs_widgets:
value = widget.value
container.kwargs[widget._kwarg] = value
if co:
clear_output(wait=True)
if manual:
manual_button.disabled = True
try:
container.result = f(**container.kwargs)
except Exception as e:
ip = get_ipython()
if ip is None:
container.log.warn("Exception in interact callback: %s",
e,
exc_info=True)
else:
ip.showtraceback()
finally:
if manual:
manual_button.disabled = False
# Wire up the widgets
# If we are doing manual running, the callback is only triggered by the button
# Otherwise, it is triggered for every trait change received
# On-demand running also suppresses running the function with the initial parameters
if manual:
manual_button.on_click(call_f)
else:
for widget in kwargs_widgets:
widget.on_trait_change(call_f, 'value')
container.on_displayed(lambda _: call_f(None, None, None))
return container
def interactive(__interact_f, **kwargs):
"""Build a group of widgets to interact with a function."""
f = __interact_f
co = kwargs.pop('clear_output', True)
manual = kwargs.pop('__manual', False)
kwargs_widgets = []
container = Box()
container.result = None
container.args = []
container.kwargs = dict()
kwargs = kwargs.copy()
new_kwargs = _find_abbreviations(f, kwargs)
# Before we proceed, let's make sure that the user has passed a set of args+kwargs
# that will lead to a valid call of the function. This protects against unspecified
# and doubly-specified arguments.
getcallargs(f, **{n:v for n,v,_ in new_kwargs})
# Now build the widgets from the abbreviations.
kwargs_widgets.extend(_widgets_from_abbreviations(new_kwargs))
# This has to be done as an assignment, not using container.children.append,
# so that traitlets notices the update. We skip any objects (such as fixed) that
# are not DOMWidgets.
c = [w for w in kwargs_widgets if isinstance(w, DOMWidget)]
# If we are only to run the function on demand, add a button to request this
if manual:
manual_button = Button(description="Run %s" % f.__name__)
c.append(manual_button)
container.children = c
# Build the callback
def call_f(name=None, old=None, new=None):
container.kwargs = {}
for widget in kwargs_widgets:
value = widget.value
container.kwargs[widget.description] = value
if co:
clear_output(wait=True)
if manual:
manual_button.disabled = True
try:
container.result = f(**container.kwargs)
except Exception as e:
ip = get_ipython()
if ip is None:
container.log.warn("Exception in interact callback: %s", e, exc_info=True)
else:
ip.showtraceback()
finally:
if manual:
manual_button.disabled = False
# Wire up the widgets
# If we are doing manual running, the callback is only triggered by the button
# Otherwise, it is triggered for every trait change received
# On-demand running also suppresses running the fucntion with the initial parameters
if manual:
manual_button.on_click(call_f)
else:
for widget in kwargs_widgets:
widget.on_trait_change(call_f, 'value')
container.on_displayed(lambda _: call_f(None, None, None))
return container
def __init__(self,
model,
opt,
maxiters,
verbose=False,
current_iteration=0,
ipython_notebook=True,
clear_after_finish=False):
self.verbose = verbose
if self.verbose:
self.model = model
self.iteration = current_iteration
self.p_iter = self.iteration
self.maxiters = maxiters
self.len_maxiters = len(str(maxiters))
self.opt_name = opt.opt_name
self.model.add_observer(self, self.print_status)
self.status = 'running'
self.clear = clear_after_finish
self.update()
try:
from IPython.display import display
from IPython.html.widgets import IntProgress, HTML, Box, VBox, HBox, FlexBox
self.text = HTML(width='100%')
self.progress = IntProgress(min=0, max=maxiters)
#self.progresstext = Text(width='100%', disabled=True, value='0/{}'.format(maxiters))
self.model_show = HTML()
self.ipython_notebook = ipython_notebook
except:
# Not in Ipython notebook
self.ipython_notebook = False
if self.ipython_notebook:
left_col = VBox(children=[self.progress, self.text],
padding=2,
width='40%')
right_col = Box(children=[self.model_show],
padding=2,
width='60%')
self.hor_align = FlexBox(children=[left_col, right_col],
width='100%',
orientation='horizontal')
display(self.hor_align)
try:
self.text.set_css('width', '100%')
left_col.set_css({
'padding': '2px',
'width': "100%",
})
right_col.set_css({
'padding': '2px',
})
self.hor_align.set_css({
'width': "100%",
})
self.hor_align.remove_class('vbox')
self.hor_align.add_class('hbox')
left_col.add_class("box-flex1")
right_col.add_class('box-flex0')
except:
pass
#self.text.add_class('box-flex2')
#self.progress.add_class('box-flex1')
else:
self.exps = exponents(self.fnow, self.current_gradient)
print('Running {} Code:'.format(self.opt_name))
print(' {3:7s} {0:{mi}s} {1:11s} {2:11s}'.format(
"i", "f", "|g|", "runtime", mi=self.len_maxiters))
def __init__(self, model, opt, maxiters, verbose=False, current_iteration=0, ipython_notebook=True, clear_after_finish=False):
self.verbose = verbose
if self.verbose:
self.model = model
self.iteration = current_iteration
self.p_iter = self.iteration
self.maxiters = maxiters
self.len_maxiters = len(str(maxiters))
self.opt_name = opt.opt_name
self.model.add_observer(self, self.print_status)
self.status = 'running'
self.clear = clear_after_finish
self.update()
try:
from IPython.display import display
from IPython.html.widgets import IntProgress, HTML, Box, VBox, HBox, FlexBox
self.text = HTML(width='100%')
self.progress = IntProgress(min=0, max=maxiters)
#self.progresstext = Text(width='100%', disabled=True, value='0/{}'.format(maxiters))
self.model_show = HTML()
self.ipython_notebook = ipython_notebook
except:
# Not in Ipython notebook
self.ipython_notebook = False
if self.ipython_notebook:
left_col = VBox(children=[self.progress, self.text], padding=2, width='40%')
right_col = Box(children=[self.model_show], padding=2, width='60%')
self.hor_align = FlexBox(children = [left_col, right_col], width='100%', orientation='horizontal')
display(self.hor_align)
try:
self.text.set_css('width', '100%')
left_col.set_css({
'padding': '2px',
'width': "100%",
})
right_col.set_css({
'padding': '2px',
})
self.hor_align.set_css({
'width': "100%",
})
self.hor_align.remove_class('vbox')
self.hor_align.add_class('hbox')
left_col.add_class("box-flex1")
right_col.add_class('box-flex0')
except:
pass
#self.text.add_class('box-flex2')
#self.progress.add_class('box-flex1')
else:
self.exps = exponents(self.fnow, self.current_gradient)
print('Running {} Code:'.format(self.opt_name))
print(' {3:7s} {0:{mi}s} {1:11s} {2:11s}'.format("i", "f", "|g|", "runtime", mi=self.len_maxiters))