# Parse the command line. quick_parse is required for MPI compatibility
params, options = parser.parse_args(show_diff_phil=True,quick_parse=True)
#Program defaults
if params.refdir is None:
from LS49 import ls49_big_data
params.refdir = os.path.join(ls49_big_data,"adse13_196","report1")
assert os.path.isdir(params.testdir)
assert os.path.isdir(params.refdir)
return params,options
if __name__=="__main__":
params,options = parse_input()
simulation_template = os.path.join(params.testdir, params.template)
reference_template = os.path.join(params.refdir, params.template)
actual_compare = 0
for i in range(params.ntest):
newfile = simulation_template%i
oldfile = reference_template%i
#print(oldfile,newfile)
import os
if not os.path.isfile(oldfile):continue
if not os.path.isfile(newfile):continue
print("COMPARISON",i)
compare_two_images(reference=oldfile, test=newfile, tolerance_delta=params.maxdelta,
tolerance_count=params.maxcount, verbose_pixels=params.verbose, verbose=False)
actual_compare += 1
assert actual_compare >= params.mincompare, "Did not compare %d images, only %d"%(params.mincompare,actual_compare)
print("OK")
#explanation: for mono and poly, use the step5_pad simulation with separate structure factors for each energy channel
# for laue, we want a single kernel call, so use step5_laue that sets only a single value for structure factors,
# and an appropriate reference image calculated that way on CPU.
if __name__ == "__main__":
import sys
mode = sys.argv[1]
assert mode in ["mono", "poly", "laue"]
if mode == "laue":
run_laue(create=False)
ls49_big_data = os.environ[
"LS49_BIG_DATA"] # get absolute path from environment
compare_two_images(reference=os.path.join(
ls49_big_data, "reference", "step5laue_remote_ref_000000.img.gz"),
test="./cuda_step5laue_000000.img.gz",
tolerance_count=200)
elif mode == "poly":
run_polychromatic(create=False)
ls49_big_data = os.environ[
"LS49_BIG_DATA"] # get absolute path from environment
compare_two_images(reference=os.path.join(
ls49_big_data, "reference", "step5_MPIbatch_000000.img.gz"),
test="./cuda_step5poly_000000.img.gz")
else:
run_monochromatic()
ls49_big_data = os.environ[
"LS49_BIG_DATA"] # get absolute path from environment
compare_two_images(reference=os.path.join(ls49_big_data, "reference",
"step5_000000.img.gz"),
test="./cuda_step5_000000.img.gz")
# make sure the user doesn't overwrite existing images
import LS49.utils.safe_to_write as s2w
s2w.cwd_safe_to_write([
"*cuda_step5*_000000_intimage*.img", "*cuda_step5*_000000.img.gz",
"*cuda_step5*_000000_dblprec*.pickle"
])
mode = sys.argv[1]
assert mode in ["mono", "poly"]
ls49_big_data = os.environ[
"LS49_BIG_DATA"] # get absolute path from environment
if mode == "poly":
run_polychromatic()
# compare to reference integer image, smv-formatted
compare_two_images(reference=os.path.join(
ls49_big_data, "reference",
"ref_cpu_step5poly_000000_intimage_001.img"),
test="cuda_step5poly_000000_intimage_001.img")
# compare to reference double precision image, numpy array pickle
compare_two_raw_images(
reference=os.path.join(
ls49_big_data, "reference",
"ref_cpu_step5poly_000000_dblprec_001.pickle"),
test="./cuda_step5poly_000000_dblprec_001.pickle")
else:
run_monochromatic()
# compare to reference integer image, smv-formatted
compare_two_images(reference=os.path.join(
ls49_big_data, "reference",
"ref_cpu_step5_000000_intimage_001.img"),
test="cuda_step5_000000_intimage_001.img")
# compare to reference double precision image, numpy array pickle
def run_polychromatic(create):
from LS49.sim.step5_pad import tst_all
tst_all(quick=False,
prefix="cuda_step5") #actually perform the 100-channel simulation
if __name__ == "__main__":
import sys
mode = sys.argv[1]
assert mode in ["mono", "poly"]
if mode == "poly":
run_polychromatic(create=False)
ls49_big_data = os.environ[
"LS49_BIG_DATA"] # get absolute path from environment
compare_two_images(reference=os.path.join(
ls49_big_data, "reference", "step5_MPIbatch_000000.img.gz"),
test="./cuda_step5poly_000000.img.gz")
else:
run_monochromatic()
ls49_big_data = os.environ[
"LS49_BIG_DATA"] # get absolute path from environment
compare_two_images(reference=os.path.join(ls49_big_data, "reference",
"step5_000000.img.gz"),
test="./cuda_step5_000000.img.gz")
# test the raw photons due to Bragg scatter:
compare_two_images(reference=os.path.join(
ls49_big_data, "reference", "step5_000000_intimage_001.img"),
test="./cuda_step5_000000_intimage_001.img")
# add in the effects of water scatter:
compare_two_images(reference=os.path.join(
ls49_big_data, "reference", "step5_000000_intimage_002.img"),
self.data[channel_no]=data
print ("Storing channel information for energy %d"%channel_no)
debug_utils.channel_extractor = channel_extractor
filename="energy_dependent_diffraction.pickle"
from LS49.tests import tst_monochromatic_image
from LS49 import ls49_big_data
def run_polychromatic(create):
from LS49.sim.step5_pad import tst_all
tst_all(quick=False) #actually perform the 100-channel simulation
from LS49.sim.step5_pad import CHDBG_singleton
if create:
cPickle.dump(CHDBG_singleton.data,
open(os.path.join(ls49_big_data,"reference",filename),"wb"),cPickle.HIGHEST_PROTOCOL)
else:
with open(os.path.join(ls49_big_data,"reference",filename),"rb") as ref_F:
if six.PY3:
CH_ref = cPickle.load(ref_F, encoding="bytes")
else:
CH_ref = cPickle.load(ref_F)
assert len(CHDBG_singleton.data)==10,"Should have recorded 10 energy channels"
for key in CHDBG_singleton.data:
assert CHDBG_singleton.data[key] == CH_ref[key],"Energy-channel results should agree with reference"
if __name__=="__main__":
run_polychromatic(create=False)
tst_monochromatic_image.compare_two_images(
reference=os.path.join(ls49_big_data,"reference","step5_MPIbatch_000000.img.gz"), test="./step5poly_000000.img.gz")
print("OK")
from __future__ import division, print_function
import os
from LS49.tests import tst_monochromatic_image
from LS49 import ls49_big_data
def run_polychromatic(create):
#from LS49.sim import step5_laue
#step5_laue.add_spots_algorithm = "JH"
from LS49.sim.step5_laue import tst_all
tst_all(quick=False) #actually perform the 100-channel simulation
if __name__ == "__main__":
run_polychromatic(create=False)
tst_monochromatic_image.compare_two_images(
reference=os.path.join(ls49_big_data, "reference",
"step5laue_remote_ref_000000.img.gz"),
test="./step5laue_000000.img.gz",
tolerance_count=200)
print("OK")
from __future__ import division, print_function
import os
from LS49.tests.tst_monochromatic_image import compare_two_images
if __name__=="__main__":
from LS49.sim import step5_pad_chan_sim
import sys
algo = sys.argv[1]
assert( algo in ["cuda","NKS","JH"])
step5_pad_chan_sim.ADD_SPOTS_ALGORITHM = algo
print ("\n\n<><><><>\nUSING ALGO: %s\n><><><><>" % algo)
step5_pad_chan_sim.tst_all(prefix="cuda_step5_pad_chan_sim_")
ls49_big_data = os.environ["LS49_BIG_DATA"]
compare_two_images(
reference=os.path.join(
ls49_big_data,
"reference",
"cuda_step5_pad_chan_sim_poly_000000.img.gz"),
test="./cuda_step5_pad_chan_sim_poly_000000.img.gz")
print("OK")