def make_afterCHIR_CD11_myPGC(main_path, well_image):
# main_path: r'D:\CD11'
# well_image: specific image path
if not os.path.exists(main_path):
print('!ERROR! The main_path does not existed!')
return False
if not os.path.exists(well_image):
print('!ERROR! The well_image does not existed!')
return False
folder_MyPGC_img = 'MyPGC_img'
if os.path.exists(well_image):
t_path_list = os.path.split(
well_image
) # [r'D:\pro\CD22\SSS_100%\S1', '2018-11-28~IPS_CD13~T1.jpg']
t1_path_list = os.path.split(
t_path_list[0]) # [r'D:\pro\CD22\SSS_100%', 'S1']
t2_path_list = os.path.split(
t1_path_list[0]) # [r'D:\pro\CD22', 'SSS_100%']
SSS_folder = t2_path_list[1] # 'SSS_100%'
S_index = t1_path_list[1] # 'S1'
S = int(S_index.split('S')[1]) # 1
img_name = t_path_list[1] # '2018-11-28~IPS_CD13~T1.png'
name_index = img_name[:-4] # '2018-11-28~IPS_CD13~T1'
T = int(name_index.split('~T')[1]) # 1
if name_index.find('IPS') >= 0:
E = 1
else:
E = 2
print('>>>', S_index, '---', name_index,
' Image MyPGC Enhancement :::')
to_file = os.path.join(main_path, folder_MyPGC_img, SSS_folder,
S_index, img_name)
if not os.path.exists(os.path.join(main_path, folder_MyPGC_img)):
os.makedirs(os.path.join(main_path, folder_MyPGC_img))
if not os.path.exists(
os.path.join(main_path, folder_MyPGC_img, SSS_folder)):
os.makedirs(os.path.join(main_path, folder_MyPGC_img, SSS_folder))
if not os.path.exists(
os.path.join(main_path, folder_MyPGC_img, SSS_folder,
S_index)):
os.makedirs(
os.path.join(main_path, folder_MyPGC_img, SSS_folder, S_index))
image_my_PGC(well_image, to_file)
call_matlab_FC(main_path,
to_file,
E,
T,
S,
result_path='FractalCurving',
this_async=True,
do_curving_now=False,
sleep_s=0)
return True
def make_afterCHIR10_CD13_myPGC(main_path, well_image):
if not os.path.exists(main_path):
print('!ERROR! The main_path does not existed!')
return False
if not os.path.exists(well_image):
print('!ERROR! The well_image does not existed!')
return False
# folder_Enhanced_img = 'Enhanced_img'
folder_MyPGC_img = 'MyPGC_img'
afterCHIR10_CD13 = [
'2018-11-30~IPS-3_CD13~T18', '2018-12-01~I-1_CD13~T1',
'2018-12-01~I-1_CD13~T2', '2018-12-01~I-1_CD13~T3',
'2018-12-01~I-1_CD13~T4', '2018-12-01~I-1_CD13~T5',
'2018-12-01~I-1_CD13~T6', '2018-12-01~I-1_CD13~T7',
'2018-12-01~I-1_CD13~T8', '2018-12-01~I-1_CD13~T9',
'2018-12-01~I-1_CD13~T10'
]
# if len(well_image) == 2:
# pass
# else:
# return False
if os.path.exists(well_image):
t_path_list = os.path.split(
well_image
) # [r'D:\pro\CD22\SSS_100%\S1', '2018-11-28~IPS_CD13~T1.jpg']
t1_path_list = os.path.split(
t_path_list[0]) # [r'D:\pro\CD22\SSS_100%', 'S1']
t2_path_list = os.path.split(
t1_path_list[0]) # [r'D:\pro\CD22', 'SSS_100%']
SSS_folder = t2_path_list[1] # 'SSS_100%'
S_index = t1_path_list[1] # 'S1'
img_name = t_path_list[1] # '2018-11-28~IPS_CD13~T1.png'
name_index = img_name[:-4] # '2018-11-28~IPS_CD13~T1'
if name_index in afterCHIR10_CD13:
print('>>>', S_index, '---', name_index,
' Image MyPGC Enhancement :::')
to_file = os.path.join(main_path, folder_MyPGC_img, SSS_folder,
S_index, img_name)
if not os.path.exists(os.path.join(main_path, folder_MyPGC_img)):
os.makedirs(os.path.join(main_path, folder_MyPGC_img))
if not os.path.exists(
os.path.join(main_path, folder_MyPGC_img, SSS_folder)):
os.makedirs(
os.path.join(main_path, folder_MyPGC_img, SSS_folder))
if not os.path.exists(
os.path.join(main_path, folder_MyPGC_img, SSS_folder,
S_index)):
os.makedirs(
os.path.join(main_path, folder_MyPGC_img, SSS_folder,
S_index))
image_my_PGC(well_image, to_file)
return True
def make_afterCHIR10_CD27_myPGC(main_path, well_image):
# main_path: r'M:\CD27\PROCESSING'
# well_image: specific image path r'M:\CD27\PROCESSING\SSS_100%\S2\2019-06-22~CD27_stageI_0h~T6.png'
if not os.path.exists(main_path):
print('!ERROR! The main_path does not existed!')
return False
if not os.path.exists(well_image):
print('!ERROR! The well_image does not existed!')
return False
folder_MyPGC_img = 'MyPGC_img'
afterCHIR10_CD27 = [
'2019-06-22~CD27_IPS(H9)~T1', '2019-06-22~CD27_stageI_0h~T1',
'2019-06-22~CD27_stageI_0h~T2', '2019-06-22~CD27_stageI_0h~T3',
'2019-06-22~CD27_stageI_0h~T4', '2019-06-22~CD27_stageI_0h~T5',
'2019-06-22~CD27_stageI_0h~T6', '2019-06-22~CD27_stageI_0h~T7',
'2019-06-22~CD27_stageI_0h~T8', '2019-06-22~CD27_stageI_0h~T9',
'2019-06-22~CD27_stageI_0h~T10'
]
if os.path.exists(well_image):
t_path_list = os.path.split(
well_image
) # [r'D:\pro\CD22\SSS_100%\S1', '2018-11-28~IPS_CD13~T1.jpg']
t1_path_list = os.path.split(
t_path_list[0]) # [r'D:\pro\CD22\SSS_100%', 'S1']
t2_path_list = os.path.split(
t1_path_list[0]) # [r'D:\pro\CD22', 'SSS_100%']
SSS_folder = t2_path_list[1] # 'SSS_100%'
S_index = t1_path_list[1] # 'S1'
img_name = t_path_list[1] # '2018-11-28~IPS_CD13~T1.png'
name_index = img_name[:-4] # '2018-11-28~IPS_CD13~T1'
if name_index in afterCHIR10_CD27:
print('>>>', S_index, '---', name_index,
' Image MyPGC Enhancement :::')
to_file = os.path.join(main_path, folder_MyPGC_img, SSS_folder,
S_index, img_name)
if not os.path.exists(os.path.join(main_path, folder_MyPGC_img)):
os.makedirs(os.path.join(main_path, folder_MyPGC_img))
if not os.path.exists(
os.path.join(main_path, folder_MyPGC_img, SSS_folder)):
os.makedirs(
os.path.join(main_path, folder_MyPGC_img, SSS_folder))
if not os.path.exists(
os.path.join(main_path, folder_MyPGC_img, SSS_folder,
S_index)):
os.makedirs(
os.path.join(main_path, folder_MyPGC_img, SSS_folder,
S_index))
image_my_PGC(well_image, to_file)
return True
def make_afterCHIR_CD41_myPGC(main_path, well_image):
# main_path: r'H:\CD41\PROCESSING'
# well_image: specific image path
if not os.path.exists(main_path):
print('!ERROR! The main_path does not existed!')
return False
if not os.path.exists(well_image):
print('!ERROR! The well_image does not existed!')
return False
folder_MyPGC_img = 'MyPGC_img'
afterCHIR_CD41 = [
'2020-01-16~CD41_IPS~T1', '2020-01-16~CD41_STAGEI_1H~T1',
'2020-01-16~CD41_STAGEI_1H~T2', '2020-01-16~CD41_STAGEI_1H~T3',
'2020-01-16~CD41_STAGEI_1H~T4', '2020-01-16~CD41_STAGEI_1H~T5',
'2020-01-16~CD41_STAGEI_1H~T6', '2020-01-16~CD41_STAGEI_1H~T7',
'2020-01-16~CD41_STAGEI_1H~T8', '2020-01-16~CD41_STAGEI_1H~T9',
'2020-01-16~CD41_STAGEI_1H~T10', '2020-01-16~CD41_STAGEI_1H~T11',
'2020-01-16~CD41_STAGEI_1H~T12', '2020-01-16~CD41_STAGEI_1H~T13',
'2020-01-16~CD41_STAGEI_1H~T14', '2020-01-16~CD41_STAGEI_1H~T15',
'2020-01-16~CD41_STAGEI_1H~T16', '2020-01-16~CD41_STAGEI_1H~T17',
'2020-01-16~CD41_STAGEI_1H~T18', '2020-01-16~CD41_STAGEI_1H~T19',
'2020-01-16~CD41_STAGEI_1H~T20', '2020-01-16~CD41_STAGEI_1H~T21',
'2020-01-16~CD41_STAGEI_1H~T22', '2020-01-16~CD41_STAGEI_1H~T23',
'2020-01-16~CD41_STAGEI_1H~T24', '2020-01-16~CD41_STAGEI_1H~T25'
]
if os.path.exists(well_image):
t_path_list = os.path.split(
well_image
) # [r'D:\pro\CD22\SSS_100%\S1', '2018-11-28~IPS_CD13~T1.jpg']
t1_path_list = os.path.split(
t_path_list[0]) # [r'D:\pro\CD22\SSS_100%', 'S1']
t2_path_list = os.path.split(
t1_path_list[0]) # [r'D:\pro\CD22', 'SSS_100%']
SSS_folder = t2_path_list[1] # 'SSS_100%'
S_index = t1_path_list[1] # 'S1'
img_name = t_path_list[1] # '2018-11-28~IPS_CD13~T1.png'
name_index = img_name[:-4] # '2018-11-28~IPS_CD13~T1'
if name_index in afterCHIR_CD41:
print('>>>', S_index, '---', name_index,
' Image MyPGC Enhancement :::')
to_file = os.path.join(main_path, folder_MyPGC_img, SSS_folder,
S_index, img_name)
if not os.path.exists(os.path.join(main_path, folder_MyPGC_img)):
os.makedirs(os.path.join(main_path, folder_MyPGC_img))
if not os.path.exists(
os.path.join(main_path, folder_MyPGC_img, SSS_folder)):
os.makedirs(
os.path.join(main_path, folder_MyPGC_img, SSS_folder))
if not os.path.exists(
os.path.join(main_path, folder_MyPGC_img, SSS_folder,
S_index)):
os.makedirs(
os.path.join(main_path, folder_MyPGC_img, SSS_folder,
S_index))
image_my_PGC(well_image, to_file)
return True
def main(args):
# this program can extraction cell density(1) and SIFT features(256) of one M
global main_path, well_image
main_path = args.main_path # r'D:\pro\CD22'
well_image = []
well_image.append(args.well_image_0)
well_image.append(args.well_image_1)
folder_Enhanced_img = 'Enhanced_img'
folder_MyPGC_img = 'MyPGC_img'
if not os.path.exists(main_path):
print('!ERROR! The main_path does not existed!')
return False
if len(well_image) == 1:
if os.path.exists(well_image[0]):
t_path_list = os.path.split(
well_image[0]
) # [r'D:\pro\CD22\SSS_100%\S1', '2018-11-28~IPS_CD13~T1.jpg']
t1_path_list = os.path.split(
t_path_list[0]) # [r'D:\pro\CD22\SSS_100%', 'S1']
t2_path_list = os.path.split(
t1_path_list[0]) # [r'D:\pro\CD22', 'SSS_100%']
SSS_folder = t2_path_list[1] # 'SSS_100%'
S_index = t1_path_list[1] # 'S1'
img_name = t_path_list[1] # '2018-11-28~IPS_CD13~T1.png'
name_index = img_name[:-4] # '2018-11-28~IPS_CD13~T1'
print('>>>', S_index, '---', name_index, ' Image Enhancement :::')
# do something :::
# 1.image_my_enhancement()
# 2.image_my_PGC()
img_file = well_image[0]
to_file = os.path.join(main_path, folder_Enhanced_img, SSS_folder,
S_index, img_name)
if not os.path.exists(os.path.join(main_path,
folder_Enhanced_img)):
os.makedirs(os.path.join(main_path, folder_Enhanced_img))
if not os.path.exists(
os.path.join(main_path, folder_Enhanced_img, SSS_folder)):
os.makedirs(
os.path.join(main_path, folder_Enhanced_img, SSS_folder))
if not os.path.exists(
os.path.join(main_path, folder_Enhanced_img, SSS_folder,
S_index)):
os.makedirs(
os.path.join(main_path, folder_Enhanced_img, SSS_folder,
S_index))
image_my_enhancement(img_file, to_file)
to_file = os.path.join(main_path, folder_MyPGC_img, SSS_folder,
S_index, img_name)
if not os.path.exists(os.path.join(main_path, folder_MyPGC_img)):
os.makedirs(os.path.join(main_path, folder_MyPGC_img))
if not os.path.exists(
os.path.join(main_path, folder_MyPGC_img, SSS_folder)):
os.makedirs(
os.path.join(main_path, folder_MyPGC_img, SSS_folder))
if not os.path.exists(
os.path.join(main_path, folder_MyPGC_img, SSS_folder,
S_index)):
os.makedirs(
os.path.join(main_path, folder_MyPGC_img, SSS_folder,
S_index))
image_my_PGC(img_file, to_file)
elif len(well_image) == 2:
if os.path.exists(well_image[0]):
t_path_list = os.path.split(
well_image[0]
) # [r'D:\pro\CD22\SSS_100%\S1', '2018-11-28~IPS_CD13~T1.jpg']
t1_path_list = os.path.split(
t_path_list[0]) # [r'D:\pro\CD22\SSS_100%', 'S1']
t2_path_list = os.path.split(
t1_path_list[0]) # [r'D:\pro\CD22', 'SSS_100%']
SSS_folder = t2_path_list[1] # 'SSS_100%'
S_index = t1_path_list[1] # 'S1'
img_name = t_path_list[1] # '2018-11-28~IPS_CD13~T1.png'
name_index = img_name[:-4] # '2018-11-28~IPS_CD13~T1'
print('>>>', S_index, '---', name_index, ' Image Enhancement :::')
# do something :::
# 1.image_my_enhancement()
# 2.image_my_PGC()
img_file = well_image[0]
to_file = os.path.join(main_path, folder_Enhanced_img, SSS_folder,
S_index, img_name)
if not os.path.exists(os.path.join(main_path,
folder_Enhanced_img)):
os.makedirs(os.path.join(main_path, folder_Enhanced_img))
if not os.path.exists(
os.path.join(main_path, folder_Enhanced_img, SSS_folder)):
os.makedirs(
os.path.join(main_path, folder_Enhanced_img, SSS_folder))
if not os.path.exists(
os.path.join(main_path, folder_Enhanced_img, SSS_folder,
S_index)):
os.makedirs(
os.path.join(main_path, folder_Enhanced_img, SSS_folder,
S_index))
image_my_enhancement(img_file, to_file)
to_file = os.path.join(main_path, folder_MyPGC_img, SSS_folder,
S_index, img_name)
if not os.path.exists(os.path.join(main_path, folder_MyPGC_img)):
os.makedirs(os.path.join(main_path, folder_MyPGC_img))
if not os.path.exists(
os.path.join(main_path, folder_MyPGC_img, SSS_folder)):
os.makedirs(
os.path.join(main_path, folder_MyPGC_img, SSS_folder))
if not os.path.exists(
os.path.join(main_path, folder_MyPGC_img, SSS_folder,
S_index)):
os.makedirs(
os.path.join(main_path, folder_MyPGC_img, SSS_folder,
S_index))
image_my_PGC(img_file, to_file)
if os.path.exists(well_image[1]):
t_path_list = os.path.split(
well_image[1]
) # [r'D:\pro\CD22\SSSS_100%\S1', '2018-11-28~IPS_CD13~T1.jpg']
t1_path_list = os.path.split(
t_path_list[0]) # [r'D:\pro\CD22\SSSS_100%', 'S1']
t2_path_list = os.path.split(
t1_path_list[0]) # [r'D:\pro\CD22', 'SSSS_100%']
SSSS_folder = t2_path_list[1] # 'SSSS_100%'
S_index = t1_path_list[1] # 'S1'
img_name = t_path_list[1] # '2018-11-28~IPS_CD13~T1.png'
name_index = img_name[:-4] # '2018-11-28~IPS_CD13~T1'
print('>>>', S_index, '---', name_index, ' Feature Extraction :::')
# do something :::
# 0.core_features()
# 1.image_my_enhancement()
# 2.core_features()
# 3.image_my_PGC()
# 4.core_features()
img_file = well_image[1]
sigle_features(main_path, img_file, result_path='Analysis')
to_file = os.path.join(main_path, folder_Enhanced_img, SSSS_folder,
S_index, img_name)
if not os.path.exists(os.path.join(main_path,
folder_Enhanced_img)):
os.makedirs(os.path.join(main_path, folder_Enhanced_img))
if not os.path.exists(
os.path.join(main_path, folder_Enhanced_img, SSSS_folder)):
os.makedirs(
os.path.join(main_path, folder_Enhanced_img, SSSS_folder))
if not os.path.exists(
os.path.join(main_path, folder_Enhanced_img, SSSS_folder,
S_index)):
os.makedirs(
os.path.join(main_path, folder_Enhanced_img, SSSS_folder,
S_index))
image_my_enhancement(img_file, to_file)
sigle_features(main_path, to_file, result_path='Enhanced_Analysis')
to_file = os.path.join(main_path, folder_MyPGC_img, SSSS_folder,
S_index, img_name)
if not os.path.exists(os.path.join(main_path, folder_MyPGC_img)):
os.makedirs(os.path.join(main_path, folder_MyPGC_img))
if not os.path.exists(
os.path.join(main_path, folder_MyPGC_img, SSSS_folder)):
os.makedirs(
os.path.join(main_path, folder_MyPGC_img, SSSS_folder))
if not os.path.exists(
os.path.join(main_path, folder_MyPGC_img, SSSS_folder,
S_index)):
os.makedirs(
os.path.join(main_path, folder_MyPGC_img, SSSS_folder,
S_index))
image_my_PGC(img_file, to_file)
sigle_features(main_path, to_file, result_path='MyPGC_Analysis')
return True
return False