def populate_table(self):
self.listView.clear()
for geneset in os.listdir(local_path()):
item = QTreeWidgetItem(self.listView)
name = geneset[geneset.index("_")+1:geneset.rfind("_._")]
the_file = os.path.join(local_path(), geneset)
mod_time = str(modification_date(the_file))
item.setText(0, name.replace("_._", " - "))
item.setText(1, mod_time[:mod_time.rfind(".")])
def populate_table(self):
self.listView.clear()
for geneset in os.listdir(local_path()):
item = QTreeWidgetItem(self.listView)
name = geneset[geneset.index("_") + 1:geneset.rfind("_._")]
the_file = os.path.join(local_path(), geneset)
mod_time = str(modification_date(the_file))
item.setText(0, name.replace("_._", " - "))
item.setText(1, mod_time[:mod_time.rfind(".")])
def populate_table(self):
self.listView.clear()
for geneset in os.listdir(local_path()):
item = QTreeWidgetItem(self.listView)
name = geneset[geneset.index("gs_")+3:geneset.index(".gmt")+4]
the_file = os.path.join(local_path(), geneset)
mod_time = str(modification_date(the_file))
item.setText(0, name)
item.setText(1, mod_time[:mod_time.rfind(".")])
print list_local()
def populate_table(self):
self.listView.clear()
for geneset in os.listdir(local_path()):
item = QTreeWidgetItem(self.listView)
name = geneset[geneset.index("gs_")+3:geneset.index(".gmt")+4]
the_file = os.path.join(local_path(), geneset)
mod_time = str(modification_date(the_file))
item.setText(0, name)
item.setText(1, mod_time[:mod_time.rfind(".")])
print list_local()
def selection(self):
if self.listView.selectedItems():
self.info.clear()
name = self.listView.selectedItems()[0].text(0).replace(" - ", "_._")
for geneset in os.listdir(local_path()):
if geneset.__contains__(str(name)):
the_file = os.path.join(local_path(), geneset)
sets = pickle.load(open(the_file, "rb"))
stats = getGenesetsStats(sets)
num_sets, uniq_genes, avg_genes = str(stats[0]), str(stats[1]), str(stats[2])
break
self.info.setText("Gene Sets: %d\nUnique Genes: %d\nAverage Gene Set Size: %d" % (int(num_sets), int(uniq_genes), int(avg_genes)))
else:
self.info.setText("No gene set selected")
def selection(self):
if self.listView.selectedItems():
self.info.clear()
name = self.listView.selectedItems()[0].text(0).replace(" - ", "_._")
for geneset in os.listdir(local_path()):
if geneset.__contains__(str(name)):
the_file = os.path.join(local_path(), geneset)
sets = pickle.load(open(the_file, "rb"))
stats = getGenesetsStats(sets)
num_sets, uniq_genes, avg_genes = str(stats[0]), str(stats[1]), str(stats[2])
break
self.info.setText("Gene Sets: %d\nUnique Genes: %d\nAverage Gene Set Size: %d" % (int(num_sets), int(uniq_genes), int(avg_genes)))
else:
self.info.setText("No gene set selected")
def update_preview(self):
if self.listView.selectedItems():
final_text = ""
self.preview_view.clear()
name = self.listView.selectedItems()[0].text(0).replace(" - ", "_._")
for geneset in os.listdir(local_path()):
if geneset.__contains__(str(name)):
the_file = os.path.join(local_path(), geneset)
sets = pickle.load(open(the_file, "rb"))
break
for geneset in sets:
item = QTreeWidgetItem(self.preview_view)
item.setText(0, geneset.id)
item.setData(1, Qt.DisplayRole, len(geneset.genes))
item.setText(2, ", ".join(list(geneset.genes)[:5]) + ", ...")
else:
self.preview_view.clear()
def update_preview(self):
if self.listView.selectedItems():
final_text = ""
self.preview_view.clear()
name = self.listView.selectedItems()[0].text(0).replace(" - ", "_._")
for geneset in os.listdir(local_path()):
if geneset.__contains__(str(name)):
the_file = os.path.join(local_path(), geneset)
sets = pickle.load(open(the_file, "rb"))
break
for geneset in sets:
item = QTreeWidgetItem(self.preview_view)
item.setText(0, geneset.id)
item.setData(1, Qt.DisplayRole, len(geneset.genes))
item.setText(2, ", ".join(list(geneset.genes)[:5]) + ", ...")
else:
self.preview_view.clear()
