def OnScatterByID(self, event):
from PYMEcs.recipes import localisations
from PYME.recipes.base import ModuleCollection
rec = ModuleCollection()
ScatterbyID = localisations.ScatterbyID(rec)
rec.namespace = {ScatterbyID.inputName: self.pipeline}
if ScatterbyID.configure_traits(kind='modal'):
# we call this with the pipeline to allow filtering etc
ScatterbyID.execute(rec.namespace)
def OnQindexRatio(self, event):
from PYMEcs.recipes import localisations
from PYME.recipes.base import ModuleCollection
rec = ModuleCollection()
QIRatio = localisations.QindexRatio(rec)
# we call this with the pipeline to allow filtering etc
rec.namespace = {QIRatio.inputName: self.pipeline}
if QIRatio.configure_traits(kind='modal'):
QIRatio.execute(rec.namespace)
self.pipeline.addColumn(QIRatio.qIndexRatio, rec.namespace[QIRatio.outputName][QIRatio.qIndexRatio])
def OnSaveTif(self, wx_event=None):
from pyme_omero.recipe_modules import omero_upload
import os
from PYME.recipes.base import ModuleCollection
from PYME.recipes.localisations import DensityMapping
input_dir, file_stub = os.path.split(self.pipeline.filename)
file_stub, ext = os.path.splitext(file_stub)
context = dict(file_stub=file_stub, input_dir=input_dir)
rec = ModuleCollection() # build new recipe but point to old namespace
rec.namespace = self.pipeline.recipe.namespace
rec.add_module(
DensityMapping(
rec,
inputLocalizations=self.pipeline.selectedDataSourceKey,
outputImage='thumbnail_rendering'))
rec.add_module(
omero_upload.ImageUpload(rec, input_image='thumbnail_rendering'))
if rec.configure_traits(view=rec.pipeline_view, kind='modal'):
rec.execute()
rec.save(context)