def setUp(self):
global mv
if mv is None:
from Pmv.moleculeViewer import MoleculeViewer
mv = MoleculeViewer(customizer='./.empty',
logMode='no',
withShell=False,
verbose=False)
mv.browseCommands('fileCommands', package="Pmv", topCommand=0)
mv.browseCommands('bondsCommands', package='Pmv', topCommand=0)
mv.browseCommands('colorCommands', package='Pmv', topCommand=0)
mv.browseCommands('deleteCommands', package='Pmv', topCommand=0)
mv.browseCommands('displayCommands',
commands=[
'displaySticksAndBalls',
'undisplaySticksAndBalls', 'displayCPK',
'undisplayCPK', 'displayLines',
'undisplayLines', 'displayBackboneTrace',
'undisplayBackboneTrace', 'DisplayBoundGeom'
],
package='Pmv',
topCommand=0)
mv.setOnAddObjectCommands(
['buildBondsByDistance', 'displayLines', 'colorByAtomType'],
topCommand=0)
#mv.loadModule("interactiveCommands", 'Pmv')
mv.loadCommand("visionCommands", "vision", "Pmv")
# Don't want to trap exceptions and errors... the user pref is set to 1 by
# default
#mv.setUserPreference(('trapExceptions', '0'), log = 0)
mv.setUserPreference(('warningMsgFormat', 'printed'), log=0)
self.mv = mv
def startMoleculeViewer():
global mv
from Pmv.moleculeViewer import MoleculeViewer
mv = MoleculeViewer(customizer = './.empty', logMode = 'overwrite')
mv.setUserPreference(('trapExceptions', '0'), log = 0)
mv.setUserPreference(('warningMsgFormat', 'printed'), log = 0)
mv.loadCommand('fileCommands', 'readMolecule', 'Pmv')
mv.loadCommand('deleteCommands','deleteMol', 'Pmv')
mv.loadCommand("bondsCommands", "buildBondsByDistance", "Pmv")
mv.setOnAddObjectCommands(['buildBondsByDistance','displayLines'], log=0)
mv.loadModule("interactiveCommands", 'Pmv')
mv.loadModule('secondaryStructureCommands', 'Pmv')
def startMoleculeViewer():
global mv
from Pmv.moleculeViewer import MoleculeViewer
mv = MoleculeViewer(customizer='./.empty',
logMode='overwrite',
withShell=0)
mv.setUserPreference(('trapExceptions', '0'), log=0)
mv.setUserPreference(('warningMsgFormat', 'printed'), log=0)
mv.loadCommand('fileCommands', 'readMolecule', 'Pmv')
mv.loadCommand('deleteCommands', 'deleteMol', 'Pmv')
mv.loadCommand("bondsCommands", "buildBondsByDistance", "Pmv")
mv.setOnAddObjectCommands(['buildBondsByDistance', 'displayLines'], log=0)
mv.loadModule("interactiveCommands", 'Pmv')
mv.loadModule('secondaryStructureCommands', 'Pmv')
class DisplayBaseTest(unittest.TestCase):
def setUp(self):
from Pmv.moleculeViewer import MoleculeViewer
self.mv = MoleculeViewer(customizer = './.empty',
logMode = 'overwrite', withShell=0)
self.mv.loadCommand('fileCommands', 'readMolecule', 'Pmv')
self.mv.loadCommand('deleteCommands','deleteMol', 'Pmv')
self.mv.loadCommand("bondsCommands", "buildBondsByDistance", "Pmv")
self.mv.setOnAddObjectCommands(['buildBondsByDistance',
'displayLines'], log=0)
self.mv.loadModule("interactiveCommands", 'Pmv')
# Don't want to trap exceptions and errors...
# the user pref is set to 1 by
# default
self.mv.setUserPreference(('trapExceptions', '0'), log = 0)
self.mv.setUserPreference(('warningMsgFormat', 'printed'), log = 0)
self.mv.loadModule('displayCommands', 'Pmv')
def tearDown(self):
self.mv.Exit(0)
class DisplayBaseTest(unittest.TestCase):
def setUp(self):
from Pmv.moleculeViewer import MoleculeViewer
self.mv = MoleculeViewer(customizer='./.empty',
logMode='overwrite',
withShell=0)
self.mv.loadCommand('fileCommands', 'readMolecule', 'Pmv')
self.mv.loadCommand('deleteCommands', 'deleteMol', 'Pmv')
self.mv.loadCommand("bondsCommands", "buildBondsByDistance", "Pmv")
self.mv.setOnAddObjectCommands(
['buildBondsByDistance', 'displayLines'], log=0)
self.mv.loadModule("interactiveCommands", 'Pmv')
# Don't want to trap exceptions and errors...
# the user pref is set to 1 by
# default
self.mv.setUserPreference(('trapExceptions', '0'), log=0)
self.mv.setUserPreference(('warningMsgFormat', 'printed'), log=0)
self.mv.loadModule('displayCommands', 'Pmv')
def tearDown(self):
self.mv.Exit(0)
