@author: Tim Armstrong
'''
import unittest
import PyDFlow.app.paths as app_paths
from PyDFlow.app import *
import os.path
import glob
import time
import logging
from PyDFlow.tests.PyDFlowTest import PyDFlowTest
from PyDFlow.app.exceptions import ExitCodeException, AppLaunchException
#logging.basicConfig(level=logging.DEBUG)
testdir = os.path.dirname(__file__)
app_paths.add_path(os.path.join(testdir, "apps"))
@app((localfile), (None))
def write(str):
return App("myecho", outfiles[0], str)
@app((localfile), (localfile))
def cp(src):
return App("cp", src, outfiles[0])
class TestApp(PyDFlowTest):
def setUp(self):
pass
@author: Tim Armstrong
'''
import unittest
import PyDFlow.app.paths as app_paths
from PyDFlow.app import *
import os.path
import glob
import time
import logging
from PyDFlow.tests.PyDFlowTest import PyDFlowTest
from PyDFlow.app.exceptions import ExitCodeException, AppLaunchException
#logging.basicConfig(level=logging.DEBUG)
testdir = os.path.dirname(__file__)
app_paths.add_path(os.path.join(testdir, "apps"))
@app((localfile), (None))
def write(str):
return App("myecho", outfiles[0], str)
@app((localfile), (localfile))
def cp(src):
return App("cp", src, outfiles[0])
class TestApp(PyDFlowTest):
def setUp(self):
pass
def tearDown(self):
pass
import logging
logging.basicConfig(level=logging.INFO)
if len(sys.argv) not in (2, 3):
print "USAGE: modis.py <directory with modis *.tif files> [optional output directory]"
exit(1)
modisdir = sys.argv[1]
if len(sys.argv) == 3:
outputdir = sys.argv[2]
else:
outputdir = modisdir
# Add the modis shell scripts to PyDFlow search path
srcdir = os.path.dirname(__file__)
app_paths.add_path(os.path.join(srcdir, "bin"))
imagefile = localfile.subtype()
landuse = localfile.subtype()
@app((landuse), (imagefile, int))
def getLandUse(input, sortfield):
return App("getlanduse.sh", input, sortfield, stdout=outfiles[0])
@app((localfile, localfile), (int, int, Multiple(landuse)))
def analyzeLandUse(usetype, maxnum, *inputs):
return App("analyzelanduse.sh", outfiles[0], outfiles[1], usetype, maxnum,
modisdir, *inputs)
# See the License for the specific language governing permissions and
# limitations under the License.
#!/usr/bin/python
from PyDFlow.app import *
from PyDFlow.base.patterns import treereduce
import datetime
import sys
import logging
import PyDFlow.app.paths as app_paths
import os.path
#logging.basicConfig(level=logging.DEBUG)
srcdir = os.path.dirname(__file__)
app_paths.add_path(srcdir)
app_count = 0
intfile = localfile.subtype()
sorted_intfile = intfile.subtype()
@app((sorted_intfile), (intfile))
def sort(file):
return App("sort", "-n", file, "-o", outfiles[0])
@app((sorted_intfile), (sorted_intfile, sorted_intfile))
def merge(f1, f2):
return App("merge", f1, f2, outfiles[0])
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from PyDFlow.app import *
from montage_types import *
import os.path as path
from PyDFlow import Multiple
import PyDFlow.app.paths as app_paths
# Add the montage binaries to PyDFlow search path
srcdir = path.dirname(__file__)
app_paths.add_path(path.join('/var/tmp/code/Montage_v3.3', "bin"))
app_paths.add_path('/var/tmp/code/SwiftApps/Montage/scripts')
@app((MImage) ,(MTable, MosaicData, Multiple(MImage)))
def mAdd(img_tbl, hdr, *imgs):
"""
returns mosaic from adding together images.
img_tbl specifies images to be added,
all images must be in same directory
"""
mos = outfiles[0]
return App("mAdd", "-p", path.dirname(imgs[0]), "-n", img_tbl, hdr, mos)
@app((MImage) ,(MImage, float, float, float))
def mBackground(img, a, b, c):
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from PyDFlow.app import *
from montage_types import *
import os.path as path
from PyDFlow import Multiple
import PyDFlow.app.paths as app_paths
# Add the montage binaries to PyDFlow search path
srcdir = path.dirname(__file__)
app_paths.add_path(path.join('/var/tmp/code/Montage_v3.3', "bin"))
app_paths.add_path('/var/tmp/code/SwiftApps/Montage/scripts')
@app((MImage), (MTable, MosaicData, Multiple(MImage)))
def mAdd(img_tbl, hdr, *imgs):
"""
returns mosaic from adding together images.
img_tbl specifies images to be added,
all images must be in same directory
"""
mos = outfiles[0]
return App("mAdd", "-p", path.dirname(imgs[0]), "-n", img_tbl, hdr, mos)
@app((MImage), (MImage, float, float, float))
import logging
logging.basicConfig(level=logging.INFO)
if len(sys.argv) not in (2, 3):
print "USAGE: modis.py <directory with modis *.tif files> [optional output directory]"
exit(1)
modisdir = sys.argv[1]
if len(sys.argv) == 3:
outputdir = sys.argv[2]
else:
outputdir = modisdir
# Add the modis shell scripts to PyDFlow search path
srcdir = os.path.dirname(__file__)
app_paths.add_path(os.path.join(srcdir, "bin"))
imagefile = localfile.subtype()
landuse = localfile.subtype()
@app((landuse), (imagefile, int))
def getLandUse(input, sortfield):
return App("getlanduse.sh", input, sortfield, stdout=outfiles[0])
@app((localfile, localfile), (int, int, Multiple(landuse)))
def analyzeLandUse(usetype, maxnum, *inputs):
return App("analyzelanduse.sh", outfiles[0], outfiles[1], usetype, maxnum, modisdir, *inputs)
# limitations under the License.
#!/usr/bin/python
from PyDFlow.app import *
from PyDFlow.base.patterns import treereduce
import datetime
import sys
import logging
import PyDFlow.app.paths as app_paths
import os.path
#logging.basicConfig(level=logging.DEBUG)
srcdir = os.path.dirname(__file__)
app_paths.add_path(srcdir)
app_count = 0
intfile = localfile.subtype()
sorted_intfile = intfile.subtype()
@app((sorted_intfile), (intfile))
def sort(file):
return App("sort", "-n", file, "-o", outfiles[0])
@app((sorted_intfile), (sorted_intfile, sorted_intfile))
def merge(f1, f2):
return App("merge", f1, f2, outfiles[0])