def test_asserts_query_multiple(self):
""" Show that setting the evidence with distinct objects yields
distinct results """
r = DataObject(key='relationship')
ar = DataObject(key='aref')
br = DataObject(key='bref')
e = self.ctx.Evidence(key="a", reference=ar)
e.supports(r)
self.save()
e1 = self.ctx.Evidence(key="b", reference=br)
e1.supports(r)
self.save()
e0 = Evidence()
e0.supports(r)
for x in e0.load():
lar = x.reference.one()
lbr = x.reference.one()
# Testing that either a has a result [email protected] and y has nothing or
# y has a result 1999 and a has nothing
if x.idl == e1.idl:
self.assertEqual(lbr, br)
elif x.idl == e.idl:
self.assertEqual(lar, ar)
else:
self.fail("Unknown object returned from load")
def test_asserts_query_multiple(self):
""" Show that setting the evidence with distinct objects yields
distinct results """
r = DataObject(key='relationship')
e = Evidence(key="a", author='*****@*****.**')
e.asserts(r)
e.save()
e1 = Evidence(key="b", year=1999)
e1.asserts(r)
e1.save()
e0 = Evidence()
e0.asserts(r)
for x in e0.load():
a = x.author.one()
y = x.year()
# Testing that either a has a result [email protected] and y has nothing or
# y has a result 1999 and a has nothing
if x.idl == e1.idl:
self.assertEqual(y, 1999)
elif x.idl == e.idl:
self.assertEqual(a, '*****@*****.**')
else:
self.fail("Unknown object returned from load")
def test_multiple_evidence_for_single_fact(self):
"""
Can we assert the same fact with two distinct pieces of Evidence?
"""
e1 = Evidence()
e1.pmid('777')
e2 = Evidence()
e2.pmid('888')
c = DataObject(key=23)
e1.asserts(c)
e2.asserts(c)
e1.save()
e2.save()
evs = Evidence()
evs.asserts(c)
saved_pmids = set(['777', '888'])
loaded_pmids = set([x.pmid() for x in evs.load()])
self.assertTrue(saved_pmids.issubset(loaded_pmids))
def test_asserts_query_multiple(self):
""" Show that setting the evidence with distinct objects yields
distinct results """
r = DataObject(key='relationship')
e = Evidence(key="a", author='*****@*****.**')
e.asserts(r)
e.save()
e1 = Evidence(key="b", year=1999)
e1.asserts(r)
e1.save()
e0 = Evidence()
e0.asserts(r)
for x in e0.load():
a = x.author.one()
y = x.year()
# Testing that either a has a result [email protected] and y has nothing or
# y has a result 1999 and a has nothing
if x.idl == e1.idl:
self.assertEqual(y, 1999)
elif x.idl == e.idl:
self.assertEqual(a, '*****@*****.**')
else:
self.fail("Unknown object returned from load")
def test_asserts_query_multiple(self):
""" Show that setting the evidence with distinct objects yields
distinct results """
r = DataObject(key='relationship')
ar = DataObject(key='aref')
br = DataObject(key='bref')
e = self.ctx.Evidence(key="a", reference=ar)
e.supports(r)
self.save()
e1 = self.ctx.Evidence(key="b", reference=br)
e1.supports(r)
self.save()
e0 = Evidence()
e0.supports(r)
for x in e0.load():
lar = x.reference.one()
lbr = x.reference.one()
# Testing that either a has a result [email protected] and y has nothing or
# y has a result 1999 and a has nothing
if x.idl == e1.idl:
self.assertEqual(lbr, br)
elif x.idl == e.idl:
self.assertEqual(lar, ar)
else:
self.fail("Unknown object returned from load")
def test_multiple_evidence_for_single_fact(self):
"""
Can we assert the same fact with two distinct pieces of Evidence?
"""
e1 = Evidence()
e1.pmid('777')
e2 = Evidence()
e2.pmid('888')
c = DataObject(key=23)
e1.asserts(c)
e2.asserts(c)
e1.save()
e2.save()
evs = Evidence()
evs.asserts(c)
saved_pmids = set(['777', '888'])
loaded_pmids = set([x.pmid() for x in evs.load()])
self.assertTrue(saved_pmids.issubset(loaded_pmids))
def test_1(self):
import bibtex
bt = bibtex.parse("my.bib")
n1 = Neuron("AVAL")
n2 = Neuron("DA3")
c = Connection(pre_cell=n1, post_cell=n2, synclass="synapse")
e = Evidence(bibtex=bt['white86'])
e.asserts(c)
print(list(e.load()))
def test_1(self):
import bibtex
bt = bibtex.parse("my.bib")
n1 = Neuron("AVAL")
n2 = Neuron("DA3")
c = Connection(pre_cell=n1, post_cell=n2, synclass="synapse")
e = Evidence(bibtex=bt['white86'])
e.asserts(c)
print(list(e.load()))
def test_asserts_query(self):
""" Show that we can store the evidence on an object and later retrieve it """
e = Evidence(key="a", author='*****@*****.**')
r = DataObject(key="relationship")
e.asserts(r)
e.save()
e0 = Evidence()
e0.asserts(r)
s = list(e0.load())
author = s[0].author.one()
self.assertIn('*****@*****.**', author)
def test_asserts_query(self):
""" Show that we can store the evidence on an object and later retrieve it """
e = Evidence(key="a", author='*****@*****.**')
r = DataObject(key="relationship")
e.asserts(r)
e.save()
e0 = Evidence()
e0.asserts(r)
s = list(e0.load())
author = s[0].author.one()
self.assertIn('*****@*****.**', author)
def test_get_evidence(self):
# Reference two neurons
n1 = Neuron(name='AVAL')
n2 = Neuron(name='PVCR')
# Declare a connection between them
c = Connection(n1, n2, number=1)
e = Evidence()
# Create an Evidence search-object
e.asserts(c)
# look for all of the evidence for the connection 'c'
for x in e.load():
print(x.author())
def test_get_evidence(self):
# Reference two neurons
n1 = Neuron(name='AVAL')
n2 = Neuron(name='PVCR')
# Declare a connection between them
c = Connection(n1, n2, number=1)
e = Evidence()
# Create an Evidence search-object
e.asserts(c)
# look for all of the evidence for the connection 'c'
for x in e.load():
print (x.author())
def test_asserts_query_multiple_author_matches(self):
""" Show that setting the evidence with distinct objects yields
distinct results even if there are matching values """
e = Evidence(key="k", author='*****@*****.**')
r = DataObject(key="a_statement")
e.asserts(r)
e.save()
e1 = Evidence(key="j", author='*****@*****.**')
e1.asserts(r)
e1.save()
e0 = Evidence()
e0.asserts(r)
self.assertEqual(2, len(list(e0.load())))
def test_asserts_query_multiple_author_matches(self):
""" Show that setting the evidence with distinct objects yields
distinct results even if there are matching values """
e = Evidence(key="k", author='*****@*****.**')
r = DataObject(key="a_statement")
e.asserts(r)
e.save()
e1 = Evidence(key="j", author='*****@*****.**')
e1.asserts(r)
e1.save()
e0 = Evidence()
e0.asserts(r)
self.assertEqual(2, len(list(e0.load())))