def test_synonyms(self):
""" Test that we can add and retrieve synonyms. """
c = Cell(name="ADAL", conf=self.config)
c.synonym("lineage name: ABplapaaaapp")
c.save()
self.assertEqual(set(["lineage name: ABplapaaaapp"]),
Cell(name="ADAL").synonym())
def test_daughterOf(self):
"""
Test that we can get the parent of a cell
"""
base = "ab.tahsuetoahusenoat"
child = base + "u"
p = Cell(name="peas")
p.lineageName(base)
p.save()
c = Cell(name="carrots")
c.lineageName(child)
c.save()
parent_p = c.daughterOf().name()
self.assertEqual("peas", parent_p)
def test_parentOf(self):
"""
Test that we can get the children of a cell
Tests for anterior, posterior, left, right, ventral, dorsal divisions
"""
p = Cell(name="peas")
base = 'ab.tahsuetoahusenoat'
p.lineageName(base)
p.save()
c = ["carrots", "jam", "peanuts", "celery", "tuna", "chicken"]
division_directions = "alvpdr"
for x, l in zip(c, division_directions):
ln = base + l
Cell(name=x, lineageName=ln).save()
names = set(str(x.name()) for x in p.parentOf())
self.assertEqual(set(c), names)
def test_wormbaseID(self):
""" Test that a Cell object has a wormbase ID """
c = Cell(name="ADAL", conf=self.config)
c.wormbaseID("WBbt:0004013")
c.save()
self.assertEqual("WBbt:0004013", Cell(name="ADAL").wormbaseID())
def test_lineageName(self):
""" Test that we can retrieve the lineage name """
c = Cell(name="ADAL", conf=self.config)
c.lineageName("AB plapaaaapp")
c.save()
self.assertEqual("AB plapaaaapp", Cell(name="ADAL").lineageName())
