# uploading Jupyter notebook to remote directory

fileService = Files.getFileServiceFromName(Jobs_FileServiceName);
Files.createUserVolume(fileService, Jobs_RootVolumeName, Jobs_UserVolumeName)
Files.upload(fileService, Jobs_RootVolumeName, Jobs_UserVolumeName, 
             Jobs_DirectoryName + "/" + Jobs_NotebookName, 
             localFilePath=Jobs_NotebookName);


# In[ ]:

# submit a Jupyter notebook job.

jobId = Jobs.submitNotebookJob('/home/idies/workspace/' + Jobs_UserVolumeName + '/' + Jobs_DirectoryName + '/' + Jobs_NotebookName,
                             dockerComputeDomain,
                             Jobs_DockerImageName, 
                             Jobs_UserVolumes, Jobs_DataVolumes,
                             Jobs_Alias)
print(jobId)


# In[ ]:

# get job status

jobStatus = Jobs.getJobStatus(jobId)
print(jobStatus)


# In[ ]:
Exemplo n.º 2
0
    def test_Jobs_submitNotebookJob_cancel_waitForJob_getJobStatus_getJobDescription_submitShellCommandJob(
            self):

        fileService = Files.getFileServiceFromName(Jobs_FileServiceName)
        try:
            Files.deleteUserVolume(fileService, Jobs_RootVolumeName,
                                   Jobs_UserVolumeName)
        except:
            pass

        Files.createUserVolume(fileService, Jobs_RootVolumeName,
                               Jobs_UserVolumeName)
        Files.upload(fileService,
                     Jobs_RootVolumeName,
                     Jobs_UserVolumeName,
                     Jobs_DirectoryName + "/" + Jobs_NotebookName,
                     localFilePath=Jobs_NotebookName)

        dockerComputeDomain = Jobs.getDockerComputeDomainFromName(
            Jobs_DockerComputeDomainName)

        jobId_1 = Jobs.submitNotebookJob(
            '/home/idies/workspace/' + Jobs_UserVolumeName + '/' +
            Jobs_DirectoryName + '/' + Jobs_NotebookName, dockerComputeDomain,
            Jobs_DockerImageName, Jobs_UserVolumes, Jobs_DataVolumes,
            Jobs_Parameters, Jobs_Alias)
        Jobs.cancelJob(jobId_1)
        jobStatus = Jobs.getJobStatus(jobId_1)
        self.assertTrue(jobStatus.get('status') == 128)

        jobId_2 = Jobs.submitNotebookJob(Jobs_RemoteNotebookPath,
                                         dockerComputeDomain,
                                         Jobs_DockerImageName,
                                         Jobs_UserVolumes, Jobs_DataVolumes,
                                         Jobs_Parameters, Jobs_Alias)

        jobStatus = Jobs.waitForJob(jobId_2)
        self.assertTrue(jobStatus == Jobs.getJobStatus(jobId_2))
        self.assertTrue(jobStatus.get('status') == 32)

        job = Jobs.getJobDescription(jobId_2)
        self.assertTrue(job.get('username') == Authentication_loginName)
        self.assertTrue(job.get('dockerImageName') == Jobs_DockerImageName)
        self.assertTrue(job.get('scriptURI') == Jobs_RemoteNotebookPath)
        self.assertTrue(job.get('submitterDID') == Jobs_Alias)

        jobDirectory = job.get('resultsFolderURI')
        relativePath = jobDirectory.split(
            'scratch/')[1] + Jobs_NoteBookOutPutFile
        string = Files.download(fileService,
                                'scratch',
                                '',
                                relativePath,
                                format="txt",
                                userVolumeOwner=Authentication_loginName)
        string.rstrip("\n")
        self.assertTrue(string, job.get('resultsFolderURI'))

        jobs = Jobs.getJobsList(top=2)
        found = False
        for job in jobs:
            if jobId_1 == job.get("id"):
                found = True
        self.assertTrue(found)

        found = False
        for job in jobs:
            if jobId_2 == job.get("id"):
                found = True
        self.assertTrue(found)

        jobId = Jobs.submitShellCommandJob(Jobs_ShellCommand,
                                           dockerComputeDomain,
                                           Jobs_DockerImageName,
                                           Jobs_UserVolumes, Jobs_DataVolumes,
                                           Jobs_Alias)

        jobStatus = Jobs.waitForJob(jobId)
        self.assertTrue(jobStatus == Jobs.getJobStatus(jobId))
        self.assertTrue(jobStatus.get('status') == 32)

        job = Jobs.getJobDescription(jobId)
        self.assertTrue(job.get('username') == Authentication_loginName)
        self.assertTrue(job.get('dockerImageName') == Jobs_DockerImageName)
        self.assertTrue(job.get('command') == Jobs_ShellCommand)
        self.assertTrue(job.get('submitterDID') == Jobs_Alias)

        jobDirectory = job.get('resultsFolderURI')
        relativePath = jobDirectory.split('scratch/')[1] + "command.txt"
        string = Files.download(fileService,
                                'scratch',
                                '',
                                relativePath,
                                format="txt",
                                userVolumeOwner=Authentication_loginName)
        string.rstrip("\n")
        self.assertTrue(string, job.get('resultsFolderURI'))

        Files.deleteUserVolume(fileService, Jobs_RootVolumeName,
                               Jobs_UserVolumeName)