def dispV0(dataD, inputVolume, shpV):
scene = slicer.MRMLScene
r1 = slicer.vtkMRMLScalarVolumeNode()
r11 = slicer.vtkMRMLScalarVolumeDisplayNode()
scene.AddNode(r11)
r1.AddAndObserveDisplayNodeID(r11.GetName())
imgD = slicer.vtkImageData()
imgD.SetDimensions(shpV[0], shpV[1], shpV[2])
imgD.SetScalarTypeToShort()
org = inputVolume.GetOrigin()
spa = inputVolume.GetSpacing()
mat = slicer.vtkMatrix4x4()
inputVolume.GetIJKToRASMatrix(mat)
r1.SetAndObserveImageData(imgD)
r1.SetIJKToRASMatrix(mat)
r1.SetOrigin(org[0], org[1], org[2])
r1.SetSpacing(spa[0], spa[1], spa[2])
scene.AddNode(r1)
tmp = r1.GetImageData().ToArray()
tmp[:] = dataD[:]
r1.GetDisplayNode().SetDefaultColorMap()
r1.Modified()
return
def dispUV(dataD, org, spa, mat, shpV):
scene = slicer.MRMLScene
r1 = slicer.vtkMRMLScalarVolumeNode()
r11 = slicer.vtkMRMLScalarVolumeDisplayNode()
scene.AddNode(r11)
r1.AddAndObserveDisplayNodeID(r11.GetName())
imgD = slicer.vtkImageData()
imgD.SetDimensions(shpV[0], shpV[1], shpV[2])
imgD.SetScalarTypeToUnsignedShort()
r1.SetAndObserveImageData(imgD)
r1.SetIJKToRASMatrix(mat)
r1.SetOrigin(org[0], org[1], org[2])
r1.SetSpacing(spa[0], spa[1], spa[2])
scene.AddNode(r1)
tmp = r1.GetImageData().ToArray()
print 'tmp : ', tmp.shape
print 'dataD : ', dataD.shape
tmp[:] = dataD[:]
r1.GetDisplayNode().SetDefaultColorMap()
r1.Modified()
return
def dispV0(dataD, inputVolume, shpV):
scene = slicer.MRMLScene
r1 = slicer.vtkMRMLScalarVolumeNode()
r11 = slicer.vtkMRMLScalarVolumeDisplayNode()
scene.AddNode(r11)
r1.AddAndObserveDisplayNodeID(r11.GetName())
imgD = slicer.vtkImageData()
imgD.SetDimensions(shpV[0], shpV[1], shpV[2])
imgD.SetScalarTypeToShort()
org = inputVolume.GetOrigin()
spa = inputVolume.GetSpacing()
mat = slicer.vtkMatrix4x4()
inputVolume.GetIJKToRASMatrix(mat)
r1.SetAndObserveImageData(imgD)
r1.SetIJKToRASMatrix(mat)
r1.SetOrigin(org[0], org[1], org[2])
r1.SetSpacing(spa[0], spa[1], spa[2])
scene.AddNode(r1)
tmp = r1.GetImageData().ToArray()
tmp[:] = dataD[:]
r1.GetDisplayNode().SetDefaultColorMap()
r1.Modified()
return
def dispUV(dataD, org, spa, mat, shpV):
scene = slicer.MRMLScene
r1 = slicer.vtkMRMLScalarVolumeNode()
r11 = slicer.vtkMRMLScalarVolumeDisplayNode()
scene.AddNode(r11)
r1.AddAndObserveDisplayNodeID(r11.GetName())
imgD = slicer.vtkImageData()
imgD.SetDimensions(shpV[0], shpV[1], shpV[2])
imgD.SetScalarTypeToUnsignedShort()
r1.SetAndObserveImageData(imgD)
r1.SetIJKToRASMatrix(mat)
r1.SetOrigin(org[0], org[1], org[2])
r1.SetSpacing(spa[0], spa[1], spa[2])
scene.AddNode(r1)
tmp = r1.GetImageData().ToArray()
print 'tmp : ', tmp.shape
print 'dataD : ', dataD.shape
tmp[:] = dataD[:]
r1.GetDisplayNode().SetDefaultColorMap()
r1.Modified()
return
def dispS(dataD, inputVolume, shpV):
scene = slicer.MRMLScene
r1 = slicer.vtkMRMLScalarVolumeNode()
r11 = slicer.vtkMRMLScalarVolumeDisplayNode()
r11.ScalarVisibilityOn()
r11.SetScalarRange(dataD.min(), dataD.max())
scene.AddNode(r11)
r1.AddAndObserveDisplayNodeID(r11.GetName())
imgD = slicer.vtkImageData()
imgD.SetDimensions(shpV[0], shpV[1], shpV[2])
imgD.SetNumberOfScalarComponents(1)
imgD.SetScalarTypeToDouble()
imgD.AllocateScalars()
org = inputVolume.GetOrigin()
spa = inputVolume.GetSpacing()
mat = slicer.vtkMatrix4x4()
inputVolume.GetIJKToRASMatrix(mat)
r1.SetAndObserveImageData(imgD)
r1.SetIJKToRASMatrix(mat)
r1.SetOrigin(org[0], org[1], org[2])
r1.SetSpacing(spa[0], spa[1], spa[2])
scene.AddNode(r1)
tmp = r1.GetImageData().GetPointData().GetScalars().ToArray()
print 'tmp : ', tmp.shape
print 'dataD : ', dataD.shape
dataD = reshape(dataD, (shpV[0]*shpV[1]*shpV[2], 1))
tmp[:] = dataD[:]
r1.GetDisplayNode().SetDefaultColorMap()
r1.Modified()
return
def dispS(dataD, inputVolume, shpV):
scene = slicer.MRMLScene
r1 = slicer.vtkMRMLScalarVolumeNode()
r11 = slicer.vtkMRMLScalarVolumeDisplayNode()
r11.ScalarVisibilityOn()
r11.SetScalarRange(dataD.min(), dataD.max())
scene.AddNode(r11)
r1.AddAndObserveDisplayNodeID(r11.GetName())
imgD = slicer.vtkImageData()
imgD.SetDimensions(shpV[0], shpV[1], shpV[2])
imgD.SetNumberOfScalarComponents(1)
imgD.SetScalarTypeToDouble()
imgD.AllocateScalars()
org = inputVolume.GetOrigin()
spa = inputVolume.GetSpacing()
mat = slicer.vtkMatrix4x4()
inputVolume.GetIJKToRASMatrix(mat)
r1.SetAndObserveImageData(imgD)
r1.SetIJKToRASMatrix(mat)
r1.SetOrigin(org[0], org[1], org[2])
r1.SetSpacing(spa[0], spa[1], spa[2])
scene.AddNode(r1)
tmp = r1.GetImageData().GetPointData().GetScalars().ToArray()
print 'tmp : ', tmp.shape
print 'dataD : ', dataD.shape
dataD = reshape(dataD, (shpV[0] * shpV[1] * shpV[2], 1))
tmp[:] = dataD[:]
r1.GetDisplayNode().SetDefaultColorMap()
r1.Modified()
return
