def __init__(self, name, params):
RunApp.__init__(self, name, params)
self.moose_dir = os.environ.get(
'MOOSE_DIR',
os.path.abspath(
os.path.join(os.path.dirname(os.path.realpath(__file__)),
'..')))
if os.environ.has_key("LIBMESH_DIR"):
self.libmesh_dir = os.environ['LIBMESH_DIR']
else:
self.libmesh_dir = os.path.join(self.moose_dir, 'libmesh',
'installed')
if self.specs['turn_off_exodus_output']:
self.specs['cli_args'][:0] = ['Outputs/exodus=false']
if map(int,
util.getPetscVersion(self.libmesh_dir).split(".")) < [3, 9]:
self.old_petsc = True
self.specs['cli_args'].extend(
['-snes_type test', '-snes_mf_operator 0'])
else:
self.old_petsc = False
self.specs['cli_args'].extend(
['-snes_test_jacobian', '-snes_force_iteration'])
if not self.specs['run_sim']:
self.specs['cli_args'].extend([
'-snes_type', 'ksponly', '-ksp_type', 'preonly',
'-pc_type', 'none', '-snes_convergence_test', 'skip'
])
def __init__(self, name, params):
RunApp.__init__(self, name, params)
self.moose_dir = os.environ.get(
'MOOSE_DIR',
os.path.abspath(
os.path.join(os.path.dirname(os.path.realpath(__file__)),
'..')))
if os.environ.has_key("LIBMESH_DIR"):
self.libmesh_dir = os.environ['LIBMESH_DIR']
else:
self.libmesh_dir = os.path.join(self.moose_dir, 'libmesh',
'installed')
if util.getPetscVersion(self.libmesh_dir) < '3.9':
self.specs['cli_args'].append('-snes_type test')
else:
self.specs['cli_args'].extend(
['-snes_test_jacobian', '-snes_force_iteration'])
if not self.specs['run_sim']:
self.specs['cli_args'].extend([
'-snes_type', 'ksponly', '-ksp_type', 'preonly',
'-pc_type', 'none', '-snes_convergence_test', 'skip'
])
def __init__(self, name, params):
RunApp.__init__(self, name, params)
self.moose_dir = os.environ.get('MOOSE_DIR',
os.path.abspath(os.path.join(os.path.dirname(os.path.realpath(__file__)),
'..')))
if os.environ.has_key("LIBMESH_DIR"):
self.libmesh_dir = os.environ['LIBMESH_DIR']
else:
self.libmesh_dir = os.path.join(self.moose_dir, 'libmesh', 'installed')
if util.getPetscVersion(self.libmesh_dir) < '3.9':
self.specs['cli_args'].append('-snes_type test')
else:
self.specs['cli_args'].extend(['-snes_test_jacobian', '-snes_force_iteration'])
if not self.specs['run_sim']:
self.specs['cli_args'].extend(['-snes_type', 'ksponly',
'-ksp_type', 'preonly', '-pc_type', 'none', '-snes_convergence_test', 'skip'])
def __init__(self, name, params):
RunApp.__init__(self, name, params)
self.moose_dir = os.environ.get('MOOSE_DIR',
os.path.abspath(os.path.join(os.path.dirname(os.path.realpath(__file__)),
'..')))
if os.environ.has_key("LIBMESH_DIR"):
self.libmesh_dir = os.environ['LIBMESH_DIR']
else:
self.libmesh_dir = os.path.join(self.moose_dir, 'libmesh', 'installed')
if self.specs['turn_off_exodus_output']:
self.specs['cli_args'][:0] = ['Outputs/exodus=false']
if map(int, util.getPetscVersion(self.libmesh_dir).split(".")) < [3, 9]:
self.old_petsc = True
self.specs['cli_args'].append('-snes_type test')
else:
self.old_petsc = False
self.specs['cli_args'].extend(['-snes_test_jacobian', '-snes_force_iteration'])
if not self.specs['run_sim']:
self.specs['cli_args'].extend(['-snes_type', 'ksponly',
'-ksp_type', 'preonly', '-pc_type', 'none', '-snes_convergence_test', 'skip'])
combination_dofs[idx] = [dof]
#combinations = []
#for kernels in combination_dofs :
# print kernels
moose_dir = os.environ.get(
'MOOSE_DIR',
os.path.abspath(
os.path.join(os.path.dirname(os.path.realpath(__file__)),
'../..')))
if os.environ.has_key("LIBMESH_DIR"):
libmesh_dir = os.environ['LIBMESH_DIR']
else:
libmesh_dir = os.path.join(moose_dir, 'libmesh', 'installed')
new_petsc = util.getPetscVersion(libmesh_dir) >= '3.9'
# build the parameter list for the jacobian debug run
mooseparams = moosebaseparams[:]
if not options.noauto:
if new_petsc:
petsc_test_options = [
'-snes_test_jacobian', '-snes_test_jacobian_view',
'-snes_type', 'ksponly', '-ksp_type', 'preonly', '-pc_type',
'none', '-snes_convergence_test', 'skip'
]
else:
petsc_test_options = ['-snes_type', 'test', '-snes_test_display']
mooseparams.extend(petsc_test_options + [
'-mat_fd_type', 'ds', 'BCs/active=', 'Outputs/exodus=false',
combination_dofs[idx].append(dof)
else :
combination_dofs[idx] = [dof]
#combinations = []
#for kernels in combination_dofs :
# print kernels
moose_dir = os.environ.get('MOOSE_DIR',
os.path.abspath(os.path.join(os.path.dirname(os.path.realpath(__file__)),
'../..')))
if os.environ.get("LIBMESH_DIR"):
libmesh_dir = os.environ['LIBMESH_DIR']
else:
libmesh_dir = os.path.join(moose_dir, 'libmesh', 'installed')
new_petsc = list(map(int, util.getPetscVersion(libmesh_dir).split("."))) >= [3, 9]
# build the parameter list for the jacobian debug run
mooseparams = moosebaseparams[:]
if not options.noauto :
if new_petsc:
petsc_test_options = ['-snes_test_jacobian', '-snes_test_jacobian_view', '-snes_type', 'ksponly',
'-ksp_type', 'preonly', '-pc_type', 'none', '-snes_convergence_test', 'skip',
'-snes_test_jacobian_display_threshold', '1e-10']
else:
petsc_test_options = ['-snes_type', 'test', '-snes_test_display']
mooseparams.extend(petsc_test_options + ['-mat_fd_type', 'ds',
'BCs/active=', 'Outputs/exodus=false', 'Outputs/csv=false',
'Outputs/active=', 'Executioner/solve_type=NEWTON', '--no-gdb-backtrace'])
if options.cli_args != None:
#combinations = []
#for kernels in combination_dofs :
# print kernels
moose_dir = os.environ.get(
'MOOSE_DIR',
os.path.abspath(
os.path.join(os.path.dirname(os.path.realpath(__file__)),
'../..')))
if os.environ.has_key("LIBMESH_DIR"):
libmesh_dir = os.environ['LIBMESH_DIR']
else:
libmesh_dir = os.path.join(moose_dir, 'libmesh', 'installed')
new_petsc = map(int,
util.getPetscVersion(libmesh_dir).split(".")) >= [3, 9]
# build the parameter list for the jacobian debug run
mooseparams = moosebaseparams[:]
if not options.noauto:
if new_petsc:
petsc_test_options = [
'-snes_test_jacobian', '-snes_test_jacobian_view',
'-snes_type', 'ksponly', '-ksp_type', 'preonly', '-pc_type',
'none', '-snes_convergence_test', 'skip',
'-snes_test_jacobian_display_threshold', '1e-10'
]
else:
petsc_test_options = ['-snes_type', 'test', '-snes_test_display']
mooseparams.extend(petsc_test_options + [
combination_dofs[idx].append(dof)
else :
combination_dofs[idx] = [dof]
#combinations = []
#for kernels in combination_dofs :
# print kernels
moose_dir = os.environ.get('MOOSE_DIR',
os.path.abspath(os.path.join(os.path.dirname(os.path.realpath(__file__)),
'../..')))
if os.environ.has_key("LIBMESH_DIR"):
libmesh_dir = os.environ['LIBMESH_DIR']
else:
libmesh_dir = os.path.join(moose_dir, 'libmesh', 'installed')
new_petsc = map(int, util.getPetscVersion(libmesh_dir).split(".")) >= [3, 9]
# build the parameter list for the jacobian debug run
mooseparams = moosebaseparams[:]
if not options.noauto :
if new_petsc:
petsc_test_options = ['-snes_test_jacobian', '-snes_test_jacobian_view', '-snes_type', 'ksponly',
'-ksp_type', 'preonly', '-pc_type', 'none', '-snes_convergence_test', 'skip',
'-snes_test_jacobian_display_threshold', '1e-10']
else:
petsc_test_options = ['-snes_type', 'test', '-snes_test_display']
mooseparams.extend(petsc_test_options + ['-mat_fd_type', 'ds',
'BCs/active=', 'Outputs/exodus=false', 'Outputs/csv=false',
'Outputs/active=', 'Executioner/solve_type=NEWTON', '--no-gdb-backtrace'])
if options.cli_args != None:
combination_dofs[idx].append(dof)
else :
combination_dofs[idx] = [dof]
#combinations = []
#for kernels in combination_dofs :
# print kernels
moose_dir = os.environ.get('MOOSE_DIR',
os.path.abspath(os.path.join(os.path.dirname(os.path.realpath(__file__)),
'../..')))
if os.environ.has_key("LIBMESH_DIR"):
libmesh_dir = os.environ['LIBMESH_DIR']
else:
libmesh_dir = os.path.join(moose_dir, 'libmesh', 'installed')
new_petsc = util.getPetscVersion(libmesh_dir) >= '3.9'
# build the parameter list for the jacobian debug run
mooseparams = moosebaseparams[:]
if not options.noauto :
if new_petsc:
petsc_test_options = ['-snes_test_jacobian', '-snes_test_jacobian_view', '-snes_type', 'ksponly',
'-ksp_type', 'preonly', '-pc_type', 'none', '-snes_convergence_test', 'skip']
else:
petsc_test_options = ['-snes_type', 'test', '-snes_test_display']
mooseparams.extend(petsc_test_options + ['-mat_fd_type', 'ds',
'BCs/active=', 'Outputs/exodus=false', 'Outputs/csv=false',
'Outputs/active=', 'Executioner/solve_type=NEWTON', '--no-gdb-backtrace'])
if options.cli_args != None:
mooseparams.extend([options.cli_args])