def setDataUnit(self, dataunit):
"""
Sets the dataunit this module uses for visualization
"""
VisualizationModule.setDataUnit(self, dataunit)
if self.dataUnit.isProcessed():
data = self.dataUnit.getSourceDataUnits()[0].getTimepoint(0)
else:
data = self.dataUnit.getTimepoint(0)
self.origin = data.GetOrigin()
self.spacing = data.GetSpacing()
self.extent = data.GetWholeExtent()
x = self.extent[1] / 2
y = self.extent[3] / 2
z = self.extent[5] / 2
self.setDisplaySlice(x, y, z)
ctf = self.dataUnit.getColorTransferFunction()
self.planeWidgetX.GetColorMap().SetLookupTable(ctf)
self.planeWidgetX.maxDim = x
self.planeWidgetY.GetColorMap().SetLookupTable(ctf)
self.planeWidgetY.maxDim = y
self.planeWidgetZ.GetColorMap().SetLookupTable(ctf)
self.planeWidgetZ.maxDim = z
def setDataUnit(self, dataunit): """ Sets the dataunit this module uses for visualization """ VisualizationModule.setDataUnit(self, dataunit) if self.dataUnit.isProcessed(): data = self.dataUnit.getSourceDataUnits()[0].getTimepoint(0) else: data = self.dataUnit.getTimepoint(0) self.origin = data.GetOrigin() self.spacing = data.GetSpacing() self.extent = data.GetWholeExtent() x = self.extent[1] / 2 y = self.extent[3] / 2 z = self.extent[5] / 2 self.setDisplaySlice(x, y, z) ctf = self.dataUnit.getColorTransferFunction() self.planeWidgetX.GetColorMap().SetLookupTable(ctf) self.planeWidgetX.maxDim = x self.planeWidgetY.GetColorMap().SetLookupTable(ctf) self.planeWidgetY.maxDim = y self.planeWidgetZ.GetColorMap().SetLookupTable(ctf) self.planeWidgetZ.maxDim = z
def setDataUnit(self, dataunit): """ Sets the dataunit this module uses for visualization """ if dataunit == None: return VisualizationModule.setDataUnit(self, dataunit)
def setDataUnit(self, dataunit):
"""
Sets the dataunit this module uses for visualization
"""
VisualizationModule.setDataUnit(self, dataunit)
data = self.getInput(1)
self.boxWidget.SetInput(data)
self.boxWidget.PlaceWidget()
self.boxWidget.On()
def setDataUnit(self, dataunit): """ Sets the dataunit this module uses for visualization """ VisualizationModule.setDataUnit(self, dataunit) if self.visualizer.getProcessedMode(): data = self.dataUnit.getSourceDataUnits()[0].getTimepoint(0) else: data = self.dataUnit.getTimepoint(0) sx, sy, sz = data.GetSpacing()
def setDataUnit(self, dataunit): """ Sets the dataunit this module uses for visualization """ VisualizationModule.setDataUnit(self, dataunit) data = self.getInput(1) self.boxWidget.SetInput(data) self.boxWidget.PlaceWidget() self.boxWidget.On()
def setDataUnit(self, dataunit): """ Sets the dataunit this module uses for visualization """ VisualizationModule.setDataUnit(self, dataunit) if self.visualizer.getProcessedMode(): self.voxelSize = dataunit.getSourceDataUnits()[0].getVoxelSize() else: self.voxelSize = dataunit.getVoxelSize() self.updateLine()
def setDataUnit(self, dataunit):
"""
Sets the dataunit this module uses for visualization
"""
VisualizationModule.setDataUnit(self, dataunit)
if self.visualizer.getProcessedMode():
self.voxelSize = dataunit.getSourceDataUnits()[0].getVoxelSize()
else:
self.voxelSize = dataunit.getVoxelSize()
self.updateLine()
def setDataUnit(self, dataunit):
"""
Method: setDataUnit(self)
Sets the dataunit this module uses for visualization
"""
VisualizationModule.setDataUnit(self, dataunit)
if self.visualizer.getProcessedMode():
data = self.dataUnit.getSourceDataUnits()[0].getTimepoint(0)
else:
data = self.dataUnit.getTimepoint(0)
ctf = self.dataUnit.getColorTransferFunction()
def setDataUnit(self, dataunit): """ Method: setDataUnit(self) Sets the dataunit this module uses for visualization """ VisualizationModule.setDataUnit(self, dataunit) if self.visualizer.getProcessedMode(): data = self.dataUnit.getSourceDataUnits()[0].getTimepoint(0) else: data = self.dataUnit.getTimepoint(0) ctf = self.dataUnit.getColorTransferFunction()
def setDataUnit(self, dataunit):
"""
Sets the dataunit this module uses for visualization
"""
VisualizationModule.setDataUnit(self, dataunit)
if self.visualizer.getProcessedMode():
data = self.dataUnit.getSourceDataUnits()[0].getTimepoint(0)
else:
data = self.dataUnit.getTimepoint(0)
self.data = data
sx, sy, sz = data.GetSpacing()
vx, vy, vz = self.dataUnit.getVoxelSize()
scale = vx
scale = 1000000
self.representation.SetLabelFormat("%.2fum")
self.representation.SetScaleX(vx)
self.representation.SetScaleZ(vz)
def setDataUnit(self, dataunit):
"""
Sets the dataunit this module uses for visualization
"""
VisualizationModule.setDataUnit(self, dataunit)
data = self.getInput(1)
self.origin = data.GetOrigin()
self.spacing = data.GetSpacing()
self.extent = data.GetWholeExtent()
y = self.extent[3]
x = self.extent[1]
self.planeWidget.SetInput(data)
self.planeWidget.SetOrigin(-32, -32, -32)
self.planeWidget.SetPoint1(0, y + 32, 0)
self.planeWidget.SetPoint2(x + 32, 0, 0)
self.planeWidget.PlaceWidget()
def setDataUnit(self, dataunit): """ Sets the dataunit this module uses for visualization """ VisualizationModule.setDataUnit(self, dataunit) data = self.getInput(1) self.origin = data.GetOrigin() self.spacing = data.GetSpacing() self.extent = data.GetWholeExtent() y = self.extent[3] x = self.extent[1] self.planeWidget.SetInput(data) self.planeWidget.SetOrigin(-32, -32, -32) self.planeWidget.SetPoint1(0, y + 32, 0) self.planeWidget.SetPoint2(x + 32, 0, 0) self.planeWidget.PlaceWidget()
def setDataUnit(self, dataunit):
"""
Sets the dataunit this module uses for visualization
"""
Logging.info("Dataunit for Volume Rendering:", dataunit, kw = "rendering")
VisualizationModule.setDataUnit(self, dataunit)
otf, otf2 = vtk.vtkPiecewiseFunction(), vtk.vtkPiecewiseFunction()
d = dataunit.getSingleComponentBitDepth()
maxv = 2 ** d
otf2.AddPoint(0, 0.0)
otf2.AddPoint(maxv, 1.0)
otf.AddPoint(0, 0.0)
otf.AddPoint(maxv, 0.2)
self.otfs = [otf, otf, otf, otf2, otf]
self.setInputChannel(1, 0)
self.parameters["Palette"] = self.colorTransferFunction
def setDataUnit(self, dataunit):
"""
Method: setDataUnit(self)
Sets the dataunit this module uses for visualization
"""
VisualizationModule.setDataUnit(self, dataunit)
print "got dataunit", dataunit
data = self.dataUnit.getTimepoint(0)
self.origin = data.GetOrigin()
self.spacing = data.GetSpacing()
self.extent = data.GetWholeExtent()
x = self.extent[1] / 2
y = self.extent[3] / 2
z = self.extent[5] / 2
self.setDisplaySlice(x, y, z)
ctf = self.dataUnit.getColorTransferFunction()
self.ctf = ctf
for planeWidget in self.planes:
planeWidget.GetColorMap().SetLookupTable(ctf)
def setDataUnit(self, dataunit):
"""
Sets the dataunit this module uses for visualization
"""
Logging.info("Dataunit for Volume Rendering:",
dataunit,
kw="rendering")
VisualizationModule.setDataUnit(self, dataunit)
otf, otf2 = vtk.vtkPiecewiseFunction(), vtk.vtkPiecewiseFunction()
d = dataunit.getSingleComponentBitDepth()
maxv = 2**d
otf2.AddPoint(0, 0.0)
otf2.AddPoint(maxv, 1.0)
otf.AddPoint(0, 0.0)
otf.AddPoint(maxv, 0.2)
self.otfs = [otf, otf, otf, otf2, otf]
self.setInputChannel(1, 0)
self.parameters["Palette"] = self.colorTransferFunction
def setDataUnit(self, dataunit): """ Sets the dataunit this module uses for visualization """ VisualizationModule.setDataUnit(self, dataunit)
