def postProcess(self, _edObject=None):
EDPluginExecProcessScript.postProcess(self)
strRaddoseError = self.readProcessErrorLogFile()
if((strRaddoseError is not None) and (strRaddoseError != "")):
errorMessage = EDMessage.ERROR_EXECUTION_03 % ('EDPluginRaddosev10.postProcess', 'EDPluginRaddosev10', strRaddoseError)
EDVerbose.error(errorMessage)
self.addErrorMessage(errorMessage)
raise RuntimeError, errorMessage
resultDict = self.analyseScriptLogFileName(os.path.join(self.getWorkingDirectory(), self.getScriptLogFileName()))
strSolvent = self.__dictResults[ EDPluginRaddosev10.__strSOLVENT ]
# ugly workaround while waiting for RADDOSE XML output file
strAbsorbedDose = None
for strAbsorbedDoseKeyword in EDPluginRaddosev10.__listABSORBED_DOSE:
strAbsorbedDose = self.__dictResults[ strAbsorbedDoseKeyword ]
if (strAbsorbedDose is not None):
break
if(strSolvent is None):
errorMessage = EDMessage.ERROR_EXECUTION_03 % ('EDPluginRaddosev10.postProcess', "Raddose", "No Result for Keyword [" + EDPluginRaddosev10.__strSOLVENT + "] see: " + self.getScriptLogFileName())
EDVerbose.error(errorMessage)
self.addErrorMessage(errorMessage)
raise RuntimeError, errorMessage
if(strAbsorbedDose is None):
errorMessage = EDMessage.ERROR_EXECUTION_03 % ('EDPluginRaddosev10.postProcess', "Raddose", "No Result for Keyword [" + strAbsorbedDoseKeyword + "] see: " + self.getScriptLogFileName())
EDVerbose.error(errorMessage)
self.addErrorMessage(errorMessage)
raise RuntimeError, errorMessage
self.__fSolvent = float(strSolvent)
if(self.__fSolvent < EDPluginRaddosev10.__iMIN_SOLVENT_PERCENTAGE or self.__fSolvent > EDPluginRaddosev10.__iMAX_SOLVENT_PERCENTAGE):
warningMessage = "Inconsistent solvent percentage value: %.1f" % self.__fSolvent
EDVerbose.warning(warningMessage)
self.addWarningMessage(warningMessage)
iNumberOfImages = self.getDataInput().getNumberOfImages().getValue()
fExposureTimePerImageInSec = self.getDataInput().getBeamExposureTime().getValue()
fTotalExposureTime = iNumberOfImages * fExposureTimePerImageInSec
fAbsorbedDoseSpeed = float(strAbsorbedDose) / fTotalExposureTime
xsDataAbsorbedDoseRate = XSDataAbsorbedDoseRate(fAbsorbedDoseSpeed)
xsDataAbsorbedDose = XSDataDouble(float(strAbsorbedDose))
self.__fTimeToReachHendersonLimit = EDPluginRaddosev10.__fHENDERSON_LIMIT / fAbsorbedDoseSpeed
xsDataRaddosev10Output = XSDataRaddoseOutput()
xsDataRaddosev10Output.setAbsorbedDose(xsDataAbsorbedDose)
xsDataRaddosev10Output.setAbsorbedDoseRate(xsDataAbsorbedDoseRate)
xsDataRaddosev10Output.setTimeToReachHendersonLimit(XSDataTime(self.__fTimeToReachHendersonLimit))
xsDataFilePathToLog = XSDataFile(XSDataString(os.path.join(self.getWorkingDirectory(), self.getScriptLogFileName())))
xsDataRaddosev10Output.setPathToLogFile(xsDataFilePathToLog)
self.setDataOutput(xsDataRaddosev10Output)
def __init__(self):
"""
"""
EDPluginExecProcessScript.__init__(self)
self.__strCommandBeamSize = None
self.__strCommandBeamFlux = None
self.__strCommandBeamWavelength = None
self.__strCommandCrystalSize = None
self.__strCommandCrystalCell = None
self.__strCommandCrystalNRES = None
self.__strCommandCrystalNMON = None
self.__strCommandCrystalNDNA = None
self.__strCommandCrystalNRNA = None
self.__strCommandCrystalPATM = None
self.__strCommandCrystalSATM = None
self.__strCommandExposureTime = None
self.__strCommandImages = None
self.__listCommandsRaddose = []
self.__dictResults = {}
# ugly workaround while waiting for RADDOSE XML output file
for strAbsorbedDoseKeyword in EDPluginRaddosev10.__listABSORBED_DOSE:
self.__dictResults[strAbsorbedDoseKeyword] = None
self.__dictResults[EDPluginRaddosev10.__strSOLVENT] = None
self.__fSolvent = None
self.__fTimeToReachHendersonLimit = None
self.setXSDataInputClass(XSDataRaddoseInput)
self.dataOutput = XSDataRaddoseOutput()
def testExecute(self):
self.run()
# Checks the expected result
strExpectedOutput = self.readAndParseFile (self.getReferenceDataOutputFile())
from XSDataRaddosev10 import XSDataRaddoseOutput
xsDataOutputExpected = XSDataRaddoseOutput.parseString(strExpectedOutput)
xsDataOutputObtained = self.getPlugin().getDataOutput()
def testExecute(self):
self.run()
# Checks the expected result
strExpectedOutput = self.readAndParseFile(
self.getReferenceDataOutputFile())
from XSDataRaddosev10 import XSDataRaddoseOutput
xsDataOutputExpected = XSDataRaddoseOutput.parseString(
strExpectedOutput)
xsDataOutputObtained = self.getPlugin().getDataOutput()
def testExecute(self):
self.run()
if self.getPlugin().findStringInLog("version 2"):
self.setReferenceDataOutputFile(os.path.join(self.getPluginTestsDataHome(), "XSDataRaddosev10Output_reference_Raddosev2.xml"))
# Checks the expected result
strExpectedOutput = self.readAndParseFile (self.getReferenceDataOutputFile())
from XSDataRaddosev10 import XSDataRaddoseOutput
xsDataOutputExpected = XSDataRaddoseOutput.parseString(strExpectedOutput)
xsDataOutputObtained = self.getPlugin().getDataOutput()
EDAssert.equal(xsDataOutputExpected.marshal(), xsDataOutputObtained.marshal())
def testExecute(self):
self.run()
if self.getPlugin().findStringInLog("version 2"):
self.setReferenceDataOutputFile(
os.path.join(self.getPluginTestsDataHome(),
"XSDataRaddosev10Output_reference_Raddosev2.xml"))
# Checks the expected result
strExpectedOutput = self.readAndParseFile(
self.getReferenceDataOutputFile())
from XSDataRaddosev10 import XSDataRaddoseOutput
xsDataOutputExpected = XSDataRaddoseOutput.parseString(
strExpectedOutput)
xsDataOutputObtained = self.getPlugin().getDataOutput()
EDAssert.equal(xsDataOutputExpected.marshal(),
xsDataOutputObtained.marshal())
def postProcess(self, _edObject=None):
EDPluginExecProcessScript.postProcess(self)
strRaddoseError = self.readProcessErrorLogFile()
if ((strRaddoseError is not None) and (strRaddoseError != "")):
errorMessage = EDMessage.ERROR_EXECUTION_03 % (
'EDPluginRaddosev10.postProcess', 'EDPluginRaddosev10',
strRaddoseError)
self.error(errorMessage)
self.addErrorMessage(errorMessage)
raise RuntimeError(errorMessage)
resultDict = self.analyseScriptLogFileName(
os.path.join(self.getWorkingDirectory(),
self.getScriptLogFileName()))
strSolvent = self.__dictResults[EDPluginRaddosev10.__strSOLVENT]
# ugly workaround while waiting for RADDOSE XML output file
strAbsorbedDose = None
for strAbsorbedDoseKeyword in EDPluginRaddosev10.__listABSORBED_DOSE:
strAbsorbedDose = self.__dictResults[strAbsorbedDoseKeyword]
if (strAbsorbedDose is not None):
break
if (strSolvent is None):
errorMessage = EDMessage.ERROR_EXECUTION_03 % (
'EDPluginRaddosev10.postProcess', "Raddose",
"No Result for Keyword [" + EDPluginRaddosev10.__strSOLVENT +
"] see: " + self.getScriptLogFileName())
self.error(errorMessage)
self.addErrorMessage(errorMessage)
raise RuntimeError(errorMessage)
if (strAbsorbedDose is None):
errorMessage = EDMessage.ERROR_EXECUTION_03 % (
'EDPluginRaddosev10.postProcess', "Raddose",
"No Result for Keyword [" + strAbsorbedDoseKeyword +
"] see: " + self.getScriptLogFileName())
self.error(errorMessage)
self.addErrorMessage(errorMessage)
raise RuntimeError(errorMessage)
self.__fSolvent = float(strSolvent)
if (self.__fSolvent < EDPluginRaddosev10.__iMIN_SOLVENT_PERCENTAGE
or self.__fSolvent >
EDPluginRaddosev10.__iMAX_SOLVENT_PERCENTAGE):
warningMessage = "Inconsistent solvent percentage value: %.1f" % self.__fSolvent
self.warning(warningMessage)
self.addWarningMessage(warningMessage)
iNumberOfImages = self.getDataInput().getNumberOfImages().getValue()
fExposureTimePerImageInSec = self.getDataInput().getBeamExposureTime(
).getValue()
fTotalExposureTime = iNumberOfImages * fExposureTimePerImageInSec
fAbsorbedDoseSpeed = float(strAbsorbedDose) / fTotalExposureTime
xsDataAbsorbedDoseRate = XSDataAbsorbedDoseRate(fAbsorbedDoseSpeed)
xsDataAbsorbedDose = XSDataDouble(float(strAbsorbedDose))
self.__fTimeToReachHendersonLimit = EDPluginRaddosev10.__fHENDERSON_LIMIT / fAbsorbedDoseSpeed
xsDataRaddosev10Output = XSDataRaddoseOutput()
xsDataRaddosev10Output.setAbsorbedDose(xsDataAbsorbedDose)
xsDataRaddosev10Output.setAbsorbedDoseRate(xsDataAbsorbedDoseRate)
xsDataRaddosev10Output.setTimeToReachHendersonLimit(
XSDataTime(self.__fTimeToReachHendersonLimit))
xsDataFilePathToLog = XSDataFile(
XSDataString(
os.path.join(self.getWorkingDirectory(),
self.getScriptLogFileName())))
xsDataRaddosev10Output.setPathToLogFile(xsDataFilePathToLog)
self.setDataOutput(xsDataRaddosev10Output)
