def __init__(self, MODULE, title="Xnat Download", memDisplay="MB"):
""" Init funnction.
"""
super(XnatDownloadPopup, self).__init__(MODULE=MODULE, title=title)
#-------------------
# Params
#-------------------
self.memDisplay = memDisplay
self.downloadFileSize = None
#-------------------
# Window size
#-------------------
self.window.setFixedWidth(500)
#-------------------
# Line text
#-------------------
self.textDisp = [
'', '[Unknown amount] ' + self.memDisplay +
' out of [Unknown total] ' + self.memDisplay
]
self.lines = [qt.QLabel('') for x in range(0, 2)]
#-------------------
# Prog bar
#-------------------
self.progBar = qt.QProgressBar(self.window)
self.progBar.setFixedHeight(17)
#-------------------
# Cancel button
#-------------------
self.cancelButton = qt.QPushButton()
self.cancelButton.setText("Cancel")
self.cancelButton.connect('pressed()',
self.MODULE.XnatIo.cancelDownload)
self.cancelButton.setFixedWidth(60)
#-------------------
# Add widgets to layout
#-------------------
for l in self.lines:
self.layout.addRow(l)
self.layout.addRow(self.progBar)
#-------------------
# Cancel row
#-------------------
cancelRow = qt.QHBoxLayout()
cancelRow.addStretch()
cancelRow.addWidget(self.cancelButton)
cancelRow.addSpacing(37)
self.layout.addRow(cancelRow)
#-------------------
# Clear all
#-------------------
self.reset()
def createUserInterface(self):
self.__layout = self.__parent.createUserInterface()
self.__spacerLabel = qt.QLabel(" ")
self.__layout.addRow(self.__spacerLabel)
self.__spacerLabel = qt.QLabel("The results look good!")
self.__layout.addRow(self.__spacerLabel)
self.__spacerLabel = qt.QLabel("Degree of affectation by stenosis:")
self.__layout.addRow(self.__spacerLabel)
self.__affectationGrad = qt.QProgressBar()
self.__affectationGrad.value = 35
self.__layout.addRow(self.__affectationGrad)
def createBusyProgressBarDialog(text):
dialog = qt.QDialog()
dialog.setModal(True)
vbl = qt.QVBoxLayout(dialog)
lbl = qt.QLabel(text, dialog)
lbl.setAlignment(qt.Qt.AlignCenter)
pb = qt.QProgressBar(dialog)
pb.setMinimum(0)
pb.setMaximum(0)
pb.setTextVisible(False)
pb.setMinimumWidth(lbl.sizeHint.width())
vbl.addWidget(lbl)
vbl.addWidget(pb)
return dialog
def __init__(self, parent=None):
super(AddProgresWin, self).__init__(parent)
#self.thread = SleepProgress()
self.nameLabel = qt.QLabel("0.0%")
self.nameLine = qt.QLineEdit()
self.taskLabel = qt.QLabel(
"The volume is being processed. Please wait...")
self.progressbar = qt.QProgressBar()
self.progressbar.setMinimum(0)
self.progressbar.setMaximum(0)
mainLayout = qt.QVBoxLayout()
mainLayout.addWidget(self.taskLabel)
mainLayout.addWidget(self.progressbar)
#mainLayout.addWidget(self.nameLabel, 0, 1)
self.setLayout(mainLayout)
self.setWindowTitle("Work in progress")
self.setWindowModality(True)
def addDownloadRow(self, uri, size=-1):
""" Constructs a download row object based
on the URI
"""
#-------------------
# Cancel button row
#-------------------
rowWidget = qt.QWidget()
rowWidget.setObjectName('downloadRowWidget')
rowWidget.setStyleSheet(
'#downloadRowWidget {border: 1px ' +
' solid rgb(160,160,160); border-radius: 2px; width: 100%;}')
#rowWidget.setFixedHeight(self.rowWidgetHeight)
#rowWidget.setSizePolicy(qt.QSizePolicy.MinimumExpanding,
# qt.QSizePolicy.MinimumExpanding)
layout = qt.QVBoxLayout()
rowWidget.setLayout(layout)
#-------------------
# Text Edit
#-------------------
textEdit = qt.QTextEdit()
textEdit.setStyleSheet("border: none")
textEdit.setFixedHeight(55)
textEdit.verticalScrollBar().hide()
textEdit.setFont(
qt.QFont(XnatDownloadPopup.FONT_NAME, XnatDownloadPopup.FONT_SIZE,
10, False))
layout.addWidget(textEdit)
#-------------------
# Progress Bar
#-------------------
progressBar = qt.QProgressBar(rowWidget)
progressBar.setFixedHeight(17)
progressBar.setFixedWidth(600)
progressBar.setMinimum(0)
progressBar.setMaximum(100)
progressBar.setAlignment(0x0084)
#-------------------
# Cancel button row
#-------------------
cancelButton = qt.QPushButton()
cancelButton.setText("Cancel")
cancelButton.setFont(XnatDownloadPopup.LABEL_FONT)
cancelButton.setFixedWidth(60)
cancelButton.setFixedHeight(19)
#-------------------
# Progress bar row
#-------------------
progressRow = qt.QHBoxLayout()
progressRow.addWidget(progressBar)
progressRow.addStretch()
progressRow.addWidget(cancelButton)
layout.addLayout(progressRow)
#-------------------
# Row dict
#-------------------
downloadRow = {
'queuePosition': len(self.downloadRows),
'size': 0,
'downloaded': 0,
'textEdit': textEdit,
'pathDict': XnatSlicerUtils.getXnatPathDict(uri),
'progressBar': progressBar,
'widget': rowWidget,
'cancelButton': cancelButton
}
#-------------------
# default text
#-------------------
dlStr = self.makeDownloadPath(downloadRow['pathDict'])
textEdit.setText("QUEUED<br>%s<br>Please wait...<br>" % (dlStr))
#-------------------
# Cancel callback
#-------------------
def cancelClick():
rowWidget.setEnabled(False)
#print "Cancelling download '%s'"%(dlStr)
textEdit.setText(textEdit.toHtml().replace('DOWNLOADING',
'CANCELLED'))
for key, item in self.downloadRows.iteritems():
if item['progressBar'] == progressBar:
item['progressBar'].setEnabled(False)
item['progressBar'].setMaximum(100)
self.cancelCallback(key)
cancelButton.connect('pressed()', cancelClick)
self.downloadRows[uri] = downloadRow
self.remakeWidget()
def setup(self):
# Instantiate and connect widgets ...
#
# Filters Area
#
filtersCollapsibleButton = ctk.ctkCollapsibleButton()
filtersCollapsibleButton.text = "Filters"
self.layout.addWidget(filtersCollapsibleButton)
# Layout within the dummy collapsible button
filtersFormLayout = qt.QFormLayout(filtersCollapsibleButton)
# filter search
self.searchBox = ctk.ctkSearchBox()
filtersFormLayout.addRow("Search:", self.searchBox)
self.searchBox.connect("textChanged(QString)", self.onSearch)
# filter selector
self.filterSelector = qt.QComboBox()
filtersFormLayout.addRow("Filter:", self.filterSelector)
# add all the filters listed in the json files
for idx, j in enumerate(self.jsonFilters):
name = j["name"]
self.filterSelector.addItem(name, idx)
# connections
self.filterSelector.connect('currentIndexChanged(int)',
self.onFilterSelect)
#
# Parameters Area
#
parametersCollapsibleButton = ctk.ctkCollapsibleButton()
parametersCollapsibleButton.text = "Parameters"
self.layout.addWidget(parametersCollapsibleButton)
# Layout within the dummy collapsible button
parametersFormLayout = qt.QFormLayout(parametersCollapsibleButton)
self.filterParameters = FilterParameters(parametersCollapsibleButton)
# Add vertical spacer
self.layout.addStretch(1)
#
# Status and Progress
#
statusLabel = qt.QLabel("Status: ")
self.currentStatusLabel = qt.QLabel("Idle")
hlayout = qt.QHBoxLayout()
hlayout.addStretch(1)
hlayout.addWidget(statusLabel)
hlayout.addWidget(self.currentStatusLabel)
self.layout.addLayout(hlayout)
self.progress = qt.QProgressBar()
self.progress.setRange(0, 1000)
self.progress.setValue(0)
self.layout.addWidget(self.progress)
self.progress.hide()
#
# Cancel/Apply Row
#
self.restoreDefaultsButton = qt.QPushButton("Restore Defaults")
self.restoreDefaultsButton.toolTip = "Restore the default parameters."
self.restoreDefaultsButton.enabled = True
self.cancelButton = qt.QPushButton("Cancel")
self.cancelButton.toolTip = "Abort the algorithm."
self.cancelButton.enabled = False
self.applyButton = qt.QPushButton("Apply")
self.applyButton.toolTip = "Run the algorithm."
self.applyButton.enabled = True
hlayout = qt.QHBoxLayout()
hlayout.addWidget(self.restoreDefaultsButton)
hlayout.addStretch(1)
hlayout.addWidget(self.cancelButton)
hlayout.addWidget(self.applyButton)
self.layout.addLayout(hlayout)
# connections
self.restoreDefaultsButton.connect('clicked(bool)',
self.onRestoreDefaultsButton)
self.applyButton.connect('clicked(bool)', self.onApplyButton)
self.cancelButton.connect('clicked(bool)', self.onCancelButton)
# Initlial Selection
self.filterSelector.currentIndexChanged(
self.filterSelector.currentIndex)
def __init__(self):
self.pb = qt.QProgressBar()
def __init__(self):
# Create a Progress Bar
self.pb = qt.QProgressBar()
def setup(self):
frame = qt.QFrame()
frameLayout = qt.QFormLayout()
frame.setLayout(frameLayout)
self.parent.layout().addWidget(frame)
# Choose directory button to choose the folder for saving the registered image
self.directoryButton = qt.QPushButton(
"Choose folder with the segmented images")
self.directoryButton.setFont(qt.QFont(self.font_type, self.font_size))
self.directoryButton.toolTip = "Choose a folder of .nii or .img/.hdr images of the segmented bones."
frameLayout.addWidget(self.directoryButton)
self.directoryButton.connect('clicked()', self.onDirectoryButtonClick)
frameLayout.addRow(self.directoryButton)
# Choose the Output folder button to choose the folder for saving the registered image
self.outputDirectoryButton = qt.QPushButton(
"Choose folder to save the output training data to")
self.outputDirectoryButton.setFont(
qt.QFont(self.font_type, self.font_size))
self.outputDirectoryButton.toolTip = "Choose a folder to save the output"
frameLayout.addWidget(self.outputDirectoryButton)
self.outputDirectoryButton.connect('clicked()',
self.onOutputDirectoryButtonClick)
frameLayout.addRow(self.outputDirectoryButton)
# ICP Registration Collapse button
self.ICPCollapsibleButton = ctk.ctkCollapsibleButton()
self.ICPCollapsibleButton.setFont(
qt.QFont(self.font_type, self.font_size))
self.ICPCollapsibleButton.text = "Iterative Closest Point Registration"
self.ICPCollapsibleButton.collapsed = True # Default is to not show
frameLayout.addWidget(self.ICPCollapsibleButton)
# Layout within the ICP collapsible button
self.ICPFormLayout = qt.QFormLayout(self.ICPCollapsibleButton)
# Slider for Maximum Iteration Number for ICP registration
self.label = qt.QLabel()
self.label.setFont(qt.QFont(self.font_type, self.font_size))
self.label.setText("Maximum Iteration Number: ")
self.label.setToolTip(
"Select the maximum iteration number for the ICP registration.")
self.IterationSlider = ctk.ctkSliderWidget()
self.IterationSlider.setToolTip(
"Select the maximum iteration number for the ICP registration.")
self.IterationSlider.minimum = 1
self.IterationSlider.maximum = 200
self.IterationSlider.value = 100
self.IterationSlider.singleStep = 5
self.IterationSlider.tickInterval = 1
self.IterationSlider.decimals = 0
self.IterationSlider.connect('valueChanged(double)',
self.onIterationSliderChange)
self.ICPFormLayout.addRow(self.label, self.IterationSlider)
self.IterationNumber = self.IterationSlider.value # Set default value
# Slider for Number of Landmarks for ICP
self.label = qt.QLabel()
self.label.setFont(qt.QFont(self.font_type, self.font_size))
self.label.setText("ICP Landmark Number: ")
self.label.setToolTip(
"Select the number of landmarks per surface for the ICP registration."
)
self.LandmarkSlider = ctk.ctkSliderWidget()
self.LandmarkSlider.setToolTip(
"Select the number of landmarks per surface for the ICP registration."
)
self.LandmarkSlider.minimum = 50
self.LandmarkSlider.maximum = 1000
self.LandmarkSlider.value = 500
self.LandmarkSlider.singleStep = 10
self.LandmarkSlider.tickInterval = 1
self.LandmarkSlider.decimals = 0
self.LandmarkSlider.connect('valueChanged(double)',
self.onLandmarkSliderChange)
self.ICPFormLayout.addRow(self.label, self.LandmarkSlider)
self.LandmarkNumber = self.LandmarkSlider.value # Set default value
# Slider for Maximum RMS Error for ICP
self.label = qt.QLabel()
self.label.setFont(qt.QFont(self.font_type, self.font_size))
self.label.setText("ICP Maximum RMS Error: ")
self.label.setToolTip(
"Select the maximum root mean square (RMS) error for determining the ICP registration convergence."
)
self.RMS_Slider = ctk.ctkSliderWidget()
self.RMS_Slider.setToolTip(
"Select the maximum root mean square (RMS) error for determining the ICP registration convergence."
)
self.RMS_Slider.minimum = 0.0001
self.RMS_Slider.maximum = 0.05
self.RMS_Slider.value = 0.01
self.RMS_Slider.singleStep = 0.01
self.RMS_Slider.tickInterval = 0.001
self.RMS_Slider.decimals = 3
self.RMS_Slider.connect('valueChanged(double)',
self.onRMS_SliderChange)
self.ICPFormLayout.addRow(self.label, self.RMS_Slider)
self.RMS_Number = self.RMS_Slider.value # Set default value
# Slider for choosing the reference bone
self.label = qt.QLabel()
self.label.setFont(qt.QFont(self.font_type, self.font_size))
self.label.setText("Reference Bone Label: ")
self.label.setToolTip(
"Select the label of the bone to keep static. This bone will be registered among all the volunteers. Note: Please choose the folder with the segmented images first."
)
self.Ref_Bone_Slider = ctk.ctkSliderWidget()
self.Ref_Bone_Slider.setToolTip(
"Select the label of the bone to keep static. This bone will be registered among all the volunteers. Note: Please choose the folder with the segmented images first."
)
self.Ref_Bone_Slider.minimum = 0
self.Ref_Bone_Slider.maximum = 0
self.Ref_Bone_Slider.value = 0
self.Ref_Bone_Slider.singleStep = 1
self.Ref_Bone_Slider.tickInterval = 1
self.Ref_Bone_Slider.decimals = 0
self.Ref_Bone_Slider.connect('valueChanged(double)',
self.onRef_Bone_SliderChange)
self.ICPFormLayout.addRow(self.label, self.Ref_Bone_Slider)
self.ref_label = int(self.Ref_Bone_Slider.value) # Set default value
# Radial buttons for the ICP parameters
self.radial_button_1 = qt.QRadioButton("Similarity")
self.radial_button_1.setFont(qt.QFont(self.font_type, self.font_size))
self.radial_button_1.toggled.connect(self.onICPModeSelect_1)
self.ICPFormLayout.addWidget(self.radial_button_1)
self.radial_button_2 = qt.QRadioButton("Rigid")
self.radial_button_2.setFont(qt.QFont(self.font_type, self.font_size))
self.radial_button_2.setChecked(True)
self.radial_button_2.toggled.connect(self.onICPModeSelect_2)
self.ICPFormLayout.addWidget(self.radial_button_2)
self.radial_button_3 = qt.QRadioButton("Affine")
self.radial_button_3.toggled.connect(self.onICPModeSelect_3)
self.ICPFormLayout.addWidget(self.radial_button_3)
# Text input for choosing which image labels to use
self.label = qt.QLabel()
self.label.setFont(qt.QFont(self.font_type, self.font_size))
self.label.setText("Image Labels: ")
self.label.setToolTip(
"Choose several labels to use for creating the training data. Value of -1 uses the default 1 through 9. Otherwise, input should be similar to '1,2,3' to use labels one, two, and three. "
)
self.lineedit = qt.QLineEdit()
self.lineedit.setFont(qt.QFont(self.font_type, self.font_size))
self.lineedit.setToolTip(
"Choose several labels to use for creating the training data. Value of -1 uses the default 1 through 9. Otherwise, input should be similar to '1,2,3' to use labels one, two, and three. "
)
self.ICPFormLayout.addRow(self.label, self.lineedit)
self.lineedit.setText("-1")
# Bone Smoothing Parameters Collapse Button
self.SmoothCollapsibleButton = ctk.ctkCollapsibleButton()
self.SmoothCollapsibleButton.setFont(
qt.QFont(self.font_type, self.font_size))
self.SmoothCollapsibleButton.text = "Smoothing Options"
self.SmoothCollapsibleButton.collapsed = True # Default is to not show
frameLayout.addWidget(self.SmoothCollapsibleButton)
# Layout within the smoothing options collapsible button
self.SmoothFormLayout = qt.QFormLayout(self.SmoothCollapsibleButton)
# Slider for choosing the number of iterations for bone smoothing
self.label = qt.QLabel()
self.label.setFont(qt.QFont(self.font_type, self.font_size))
self.label.setText("Smoothing Iterations: ")
self.label.setToolTip(
"Select the number of iterations for smoothing the bone surface. Higher iterations will smooth more. Lower iterations will have less smoothing."
)
self.Bone_Smoothing_Its_Slider = ctk.ctkSliderWidget()
self.Bone_Smoothing_Its_Slider.setToolTip(
"Select the number of iterations for smoothing the bone surface. Higher iterations will smooth more. Lower iterations will have less smoothing."
)
self.Bone_Smoothing_Its_Slider.minimum = 0
self.Bone_Smoothing_Its_Slider.maximum = 30
self.Bone_Smoothing_Its_Slider.value = 10
self.Bone_Smoothing_Its_Slider.singleStep = 1
self.Bone_Smoothing_Its_Slider.tickInterval = 1
self.Bone_Smoothing_Its_Slider.decimals = 0
self.Bone_Smoothing_Its_Slider.connect(
'valueChanged(double)', self.onBone_Smoothing_Its_SliderChange)
self.SmoothFormLayout.addRow(self.label,
self.Bone_Smoothing_Its_Slider)
self.smoothing_iterations = self.Bone_Smoothing_Its_Slider.value # Set default value
# Slider for choosing the smoothing relaxation factor
self.label = qt.QLabel()
self.label.setFont(qt.QFont(self.font_type, self.font_size))
self.label.setText("Relaxation Factor: ")
self.label.setToolTip(
"Select the relaxation factor for smoothing the bone surfaces. Higher relaxation will smooth the surface more while a lower factor will have less smoothing."
)
self.Bone_Smoothing_Relaxation_Slider = ctk.ctkSliderWidget()
self.Bone_Smoothing_Relaxation_Slider.setToolTip(
"Select the relaxation factor for smoothing the bone surfaces. Higher relaxation will smooth the surface more while a lower factor will have less smoothing."
)
self.Bone_Smoothing_Relaxation_Slider.minimum = 0
self.Bone_Smoothing_Relaxation_Slider.maximum = 1
self.Bone_Smoothing_Relaxation_Slider.value = 0.4
self.Bone_Smoothing_Relaxation_Slider.singleStep = 0.1
self.Bone_Smoothing_Relaxation_Slider.tickInterval = 0.1
self.Bone_Smoothing_Relaxation_Slider.decimals = 2
self.Bone_Smoothing_Relaxation_Slider.connect(
'valueChanged(double)',
self.onBone_Smoothing_Relaxation_SliderChange)
self.SmoothFormLayout.addRow(self.label,
self.Bone_Smoothing_Relaxation_Slider)
self.relaxation_factor = self.Bone_Smoothing_Relaxation_Slider.value # Set default value
# Slider for choosing the percentage of bone surface decimation
self.label = qt.QLabel()
self.label.setFont(qt.QFont(self.font_type, self.font_size))
self.label.setText("Surface Decimation: ")
self.label.setToolTip(
"Select the ratio of verticies to remove from the bone surface. This results in a smoother surface and less points for faster computation. Too much could cause surface artifacts. For example, 0.1 removes 10 percent while 0.9 removes 90 percent of points."
)
self.Bone_Decimate_Slider = ctk.ctkSliderWidget()
self.Bone_Decimate_Slider.setToolTip(
"Select the ratio of verticies to remove from the bone surface. This results in a smoother surface and less points for faster computation. Too much could cause surface artifacts. For example, 0.1 removes 10 percent while 0.9 removes 90 percent of points."
)
self.Bone_Decimate_Slider.minimum = 0
self.Bone_Decimate_Slider.maximum = 0.9
self.Bone_Decimate_Slider.value = 0
self.Bone_Decimate_Slider.singleStep = 0.05
self.Bone_Decimate_Slider.tickInterval = 0.05
self.Bone_Decimate_Slider.decimals = 2
self.Bone_Decimate_Slider.connect('valueChanged(double)',
self.onBone_Decimate_SliderChange)
self.SmoothFormLayout.addRow(self.label, self.Bone_Decimate_Slider)
self.decimate_surface = self.Bone_Decimate_Slider.value # Set default value
# Debugging Collapse button
self.RenderingCollapsibleButton = ctk.ctkCollapsibleButton()
self.RenderingCollapsibleButton.setFont(
qt.QFont(self.font_type, self.font_size))
self.RenderingCollapsibleButton.text = "Visualization"
self.RenderingCollapsibleButton.collapsed = True # Default is to not show
frameLayout.addWidget(self.RenderingCollapsibleButton)
# Layout within the debug collapsible button
self.CollapseFormLayout = qt.QFormLayout(
self.RenderingCollapsibleButton)
# Show the registered shapes toggle button
self.show_registered_shapes = qt.QCheckBox("Show Registered Shapes")
self.show_registered_shapes.setFont(
qt.QFont(self.font_type, self.font_size))
self.show_registered_shapes.toolTip = "When checked, show each registered bone. Useful for debugging any ICP registration based errors."
self.show_registered_shapes.checked = False
self.CollapseFormLayout.addWidget(self.show_registered_shapes)
# Show the registered shapes toggle button
self.show_extracted_shapes = qt.QCheckBox("Show Extracted Shapes")
self.show_extracted_shapes.setFont(
qt.QFont(self.font_type, self.font_size))
self.show_extracted_shapes.toolTip = "When checked, show the initial surfaces from the images. Useful for debugging errors based on deriving surfaces from the MR images."
self.show_extracted_shapes.checked = False
self.CollapseFormLayout.addWidget(self.show_extracted_shapes)
# Show the loaded images toggle button
self.debug_show_images = qt.QCheckBox("Show Loaded Images")
self.debug_show_images.setFont(qt.QFont(self.font_type,
self.font_size))
self.debug_show_images.toolTip = "When checked, show the loaded images. Useful for debugging if the images are flipped or loading incorrectly."
self.debug_show_images.checked = False
self.CollapseFormLayout.addWidget(self.debug_show_images)
# Debugging Collapse button
self.DebugCollapsibleButton = ctk.ctkCollapsibleButton()
self.DebugCollapsibleButton.setFont(
qt.QFont(self.font_type, self.font_size))
self.DebugCollapsibleButton.text = "Debugging"
self.DebugCollapsibleButton.collapsed = True # Default is to not show
frameLayout.addWidget(self.DebugCollapsibleButton)
# Layout within the debug collapsible button
self.CollapseFormLayout = qt.QFormLayout(self.DebugCollapsibleButton)
# Show the flip image vertically toggle button
self.flip_image_vertically = qt.QCheckBox("Flip Vertically")
self.flip_image_vertically.setFont(
qt.QFont(self.font_type, self.font_size))
self.flip_image_vertically.toolTip = "When checked, flip the images vertically after loading them."
self.flip_image_vertically.checked = False
self.CollapseFormLayout.addWidget(self.flip_image_vertically)
# Show the flip image horizontally toggle button
self.flip_image_horizontally = qt.QCheckBox("Flip Horizontally")
self.flip_image_horizontally.setFont(
qt.QFont(self.font_type, self.font_size))
self.flip_image_horizontally.toolTip = "When checked, flip the images horizontally after loading them."
self.flip_image_horizontally.checked = False
self.CollapseFormLayout.addWidget(self.flip_image_horizontally)
# Show the save bones separately toggle button
self.Save_Extracted_Bones_Separately = qt.QCheckBox(
"Save Extracted Bones Separately")
self.Save_Extracted_Bones_Separately.setFont(
qt.QFont(self.font_type, self.font_size))
self.Save_Extracted_Bones_Separately.toolTip = "When checked, save each bone surface separately after smoothing and before any registration."
self.Save_Extracted_Bones_Separately.checked = False
self.CollapseFormLayout.addWidget(self.Save_Extracted_Bones_Separately)
# Show the save bones separately toggle button
self.Save_Registered_Bones_Separately = qt.QCheckBox(
"Save Registered Bones Separately")
self.Save_Registered_Bones_Separately.setFont(
qt.QFont(self.font_type, self.font_size))
self.Save_Registered_Bones_Separately.toolTip = "When checked, save each bone surface separately after smoothing and registration (instead of combining all the bones for each volunteer/position together)."
self.Save_Registered_Bones_Separately.checked = False
self.CollapseFormLayout.addWidget(
self.Save_Registered_Bones_Separately)
# Skip the registration
self.Skip_Registration = qt.QCheckBox("Skip Registration Steps")
self.Skip_Registration.setFont(qt.QFont(self.font_type,
self.font_size))
self.Skip_Registration.toolTip = "When checked, extract each bone surface from the image and smooth the surface (this is useful if the user only wishes to extract the bones from the images and smooth them.) Consider using along with the save extracted bones setting."
self.Skip_Registration.checked = False
self.CollapseFormLayout.addWidget(self.Skip_Registration)
# Don't save the reference bone toggle button
self.Remove_Ref_Bone = qt.QCheckBox("Remove the reference bone")
self.Remove_Ref_Bone.setFont(qt.QFont(self.font_type, self.font_size))
self.Remove_Ref_Bone.toolTip = "When checked, don't save the refernce bone when saving the PLY file. For example, this is useful if using the radius as a reference bone, but if you don't want it to appear in the final model."
self.Remove_Ref_Bone.checked = False
self.CollapseFormLayout.addWidget(self.Remove_Ref_Bone)
# Choose the number of files to load from the given folder
self.label = qt.QLabel()
self.label.setFont(qt.QFont(self.font_type, self.font_size))
self.label.setText("Number of images: ")
self.label.setToolTip(
"Select how many images to use from the given folder. (Select the folder first). This is useful if want want to use just the first few images to make sure everything runs correctly."
)
self.NumFileSlider = ctk.ctkSliderWidget()
self.NumFileSlider.setToolTip(
"Select how many images to use from the given folder. (Select the folder first). This is useful if want want to use just the first few images to make sure everything runs correctly."
)
self.NumFileSlider.minimum = -1
self.NumFileSlider.maximum = 1
self.NumFileSlider.value = -1
self.NumFileSlider.singleStep = 1
self.NumFileSlider.tickInterval = 1
self.NumFileSlider.decimals = 0
self.NumFileSlider.connect('valueChanged(double)',
self.onNumSliderChange)
self.CollapseFormLayout.addRow(self.label, self.NumFileSlider)
self.num_files = self.NumFileSlider.value # Set default value
# Compute button
self.computeButton = qt.QPushButton("Create The Training Data")
self.computeButton.setFont(qt.QFont(self.font_type, self.font_size))
self.computeButton.toolTip = "Run the module and create the training data for the PCA bone displacement model."
frameLayout.addWidget(self.computeButton)
self.computeButton.connect('clicked()', self.onCompute)
self.computeButton.enabled = False
# Progress Bar (so the user knows how much longer it will take)
self.progressBar = qt.QProgressBar()
self.progressBar.setFont(qt.QFont(self.font_type, self.font_size))
self.progressBar.setValue(0)
frameLayout.addWidget(self.progressBar)
self.progressBar.hide()
def setup(self):
#
# Input
#
self.inputCollapsibleButton = ctk.ctkCollapsibleButton()
self.inputCollapsibleButton.text = "Input"
self.layout.addWidget(self.inputCollapsibleButton)
# Layout within the input collapsible button
self.inputFormLayout = qt.QFormLayout(self.inputCollapsibleButton)
import platform
self.inputJsonFn = ctk.ctkPathLineEdit()
self.inputFormLayout.addRow("Input Json:", self.inputJsonFn)
#self.inputJsonFn.setCurrentPath('input.json')
if platform.system() == 'Linux':
self.inputJsonFn.setCurrentPath(
'/home/mrusu/Projects/RadPathFusion/prostate/4_histology/')
if platform.system() == 'Windows':
self.inputJsonFn.setCurrentPath(
'C:/Projects/rad-path-fusion/prostate_RP/3_histology/')
#self.inputJsonFn.setMaximumWidth(425)
self.inputJsonFn.addCurrentPathToHistory()
#
# input fixed volume selector
#
self.inputVolumeSelector = slicer.qMRMLNodeComboBox()
self.inputVolumeSelector.nodeTypes = ["vtkMRMLScalarVolumeNode"]
self.inputVolumeSelector.selectNodeUponCreation = True
self.inputVolumeSelector.addEnabled = False
self.inputVolumeSelector.renameEnabled = True
self.inputVolumeSelector.removeEnabled = True
self.inputVolumeSelector.noneEnabled = True
self.inputVolumeSelector.showHidden = False
self.inputVolumeSelector.showChildNodeTypes = False
self.inputVolumeSelector.setMRMLScene(slicer.mrmlScene)
self.inputFormLayout.addRow("Fixed Volume: ", self.inputVolumeSelector)
#
# input fixed volume selector
#
self.inputMaskSelector = slicer.qMRMLNodeComboBox()
self.inputMaskSelector.nodeTypes = ["vtkMRMLLabelMapVolumeNode"]
self.inputMaskSelector.selectNodeUponCreation = True
self.inputMaskSelector.addEnabled = False
self.inputMaskSelector.renameEnabled = True
self.inputMaskSelector.removeEnabled = True
self.inputMaskSelector.noneEnabled = True
self.inputMaskSelector.showHidden = False
self.inputMaskSelector.showChildNodeTypes = False
self.inputMaskSelector.setMRMLScene(slicer.mrmlScene)
self.inputFormLayout.addRow("Fixed Mask: ", self.inputMaskSelector)
#
#Output
#
self.outputCollapsibleButton = ctk.ctkCollapsibleButton()
self.outputCollapsibleButton.text = "Output"
self.layout.addWidget(self.outputCollapsibleButton)
# Layout within the output collapsible button
self.outputFormLayout = qt.QFormLayout(self.outputCollapsibleButton)
"""
self.outputJsonFn = ctk.ctkPathLineEdit()
self.outputFormLayout.addRow("Output Json:", self.outputJsonFn)
if platform.system() == 'Linux':
self.outputJsonFn.setCurrentPath('/home/mrusu/Projects/RadPathFusion/prostate/4_histology/')
if platform.system() == 'Windows':
self.outputJsonFn.setCurrentPath( 'C:/Projects/rad-path-fusion/prostate_RP/3_histology/')
#self.outputJsonFn.setMaximumWidth(400)
"""
#
# output volume selector
#
self.outputVolumeSelector = slicer.qMRMLNodeComboBox()
self.outputVolumeSelector.nodeTypes = ["vtkMRMLVectorVolumeNode"]
self.outputVolumeSelector.selectNodeUponCreation = True
self.outputVolumeSelector.addEnabled = True
self.outputVolumeSelector.renameEnabled = True
self.outputVolumeSelector.removeEnabled = True
self.outputVolumeSelector.noneEnabled = True
self.outputVolumeSelector.showHidden = False
self.outputVolumeSelector.showChildNodeTypes = False
self.outputVolumeSelector.setMRMLScene(slicer.mrmlScene)
self.outputFormLayout.addRow("Output Volume: ",
self.outputVolumeSelector)
#self.outputVolumeSelector.setMaximumWidth(400)
#
# output mask volume selector
#
self.outputMaskVolumeSelector = slicer.qMRMLNodeComboBox()
self.outputMaskVolumeSelector.nodeTypes = ["vtkMRMLLabelMapVolumeNode"]
self.outputMaskVolumeSelector.selectNodeUponCreation = True
self.outputMaskVolumeSelector.addEnabled = True
self.outputMaskVolumeSelector.renameEnabled = True
self.outputMaskVolumeSelector.removeEnabled = True
self.outputMaskVolumeSelector.noneEnabled = True
self.outputMaskVolumeSelector.showHidden = False
self.outputMaskVolumeSelector.showChildNodeTypes = False
self.outputMaskVolumeSelector.setMRMLScene(slicer.mrmlScene)
# maskIDselector
self.maskIdSelector = qt.QComboBox()
self.populateMaskId()
self.outputFormLayout.addRow("Output Mask: ",
self.outputMaskVolumeSelector)
self.outputFormLayout.addRow("Mask ID", self.maskIdSelector)
#self.outputMaskVolumeSelector.setMaximumWidth(400)
#
# Status and Progress
#
statusLabel = qt.QLabel("Status: ")
self.currentStatusLabel = qt.QLabel("Idle")
hlayout = qt.QHBoxLayout()
hlayout.addStretch(1)
hlayout.addWidget(statusLabel)
hlayout.addWidget(self.currentStatusLabel)
self.layout.addLayout(hlayout)
self.progress = qt.QProgressBar()
self.progress.setRange(0, 0)
#self.progress.setValue(0)
self.layout.addWidget(self.progress)
self.progress.hide()
#Load Input
self.loadJsonButton = qt.QPushButton("Load Json")
self.loadJsonButton.toolTip = "Load the json file."
self.loadJsonButton.enabled = True
# Save Output Json
self.saveJsonButton = qt.QPushButton("Save Json")
self.saveJsonButton.toolTip = "Save the json file."
self.saveJsonButton.enabled = False
# ReconstructVolume
self.refineVolumeButton = qt.QPushButton("Refine Volume")
self.refineVolumeButton.toolTip = "Refine."
self.refineVolumeButton.enabled = True
# RegisterVolume
self.registerVolumeButton = qt.QPushButton("Register")
self.registerVolumeButton.toolTip = "Register"
self.registerVolumeButton.enabled = True
# LoadVolume
self.loadVolumeButton = qt.QPushButton("Load Volume")
self.loadVolumeButton.toolTip = "Load Volume."
self.loadVolumeButton.enabled = True
# LoadMask
self.loadMaskVolumeButton = qt.QPushButton("Load Mask")
self.loadMaskVolumeButton.toolTip = "Load a Mask"
self.loadMaskVolumeButton.enabled = True
# Clear
self.clearAllVolumeButton = qt.QPushButton("Clear ALL")
self.clearAllVolumeButton.toolTip = "Clear"
self.clearAllVolumeButton.enabled = False
hlayout = qt.QHBoxLayout()
hlayout.addWidget(self.loadJsonButton)
hlayout.addWidget(self.refineVolumeButton)
hlayout.addWidget(self.registerVolumeButton)
hlayout.addWidget(self.loadVolumeButton)
hlayout.addWidget(self.loadMaskVolumeButton)
hlayout.addWidget(self.clearAllVolumeButton)
hlayout.addStretch(1)
hlayout.addWidget(self.saveJsonButton)
self.layout.addLayout(hlayout)
self.loadJsonButton.connect('clicked(bool)', self.onLoadJson)
self.saveJsonButton.connect('clicked(bool)', self.onSaveJson)
self.refineVolumeButton.connect('clicked(bool)', self.onRefineVolume)
self.registerVolumeButton.connect('clicked(bool)',
self.onRegisterVolume)
self.loadVolumeButton.connect('clicked(bool)', self.onLoadVolume)
self.loadMaskVolumeButton.connect('clicked(bool)',
self.onLoadMaskVolume)
self.clearAllVolumeButton.connect('clicked(bool)', self.onClearAll)
self.maskIdSelector.connect('currentIndexChanged(int)',
self.onMaskIDSelect)
#
# advanced
#
self.advancedCollapsibleButton = ctk.ctkCollapsibleButton()
self.advancedCollapsibleButton.text = "Advanced"
self.layout.addWidget(self.advancedCollapsibleButton)
self.advancedCollapsibleButton.enabled = False
self.advancedFormLayout = qt.QFormLayout(
self.advancedCollapsibleButton)
# Add vertical spacer
self.layout.addStretch(1)
def setup(self):
#
# Configuration
#
self.configCollapsibleButton = ctk.ctkCollapsibleButton()
self.configCollapsibleButton.text = "Configuration"
self.layout.addWidget(self.configCollapsibleButton)
# Layout within the configuration collapsible button
self.configFormLayout = qt.QFormLayout(self.configCollapsibleButton)
import platform
self.elastixPath = ctk.ctkPathLineEdit()
self.elastixPath.filters = ctk.ctkPathLineEdit.Dirs
self.configFormLayout.addRow("Elastix Executable Path:",
self.elastixPath)
if platform.system() == 'Linux':
self.elastixPath.setCurrentPath(
'/home/mrusu/Programs/elastix-4.9.0-linux/bin/')
if platform.system() == 'Windows':
self.elastixPath.setCurrentPath("C:/Programs/elastix-4.9.0-win64/")
self.slicerElastixPath = ctk.ctkPathLineEdit()
self.slicerElastixPath.filters = ctk.ctkPathLineEdit.Dirs
self.configFormLayout.addRow("Slicer Elastix Path:",
self.slicerElastixPath)
if platform.system() == 'Linux':
self.slicerElastixPath.setCurrentPath(
'/home/mrusu/Programs/SlicerElastix/Elastix')
if platform.system() == 'Windows':
self.slicerElastixPath.setCurrentPath(
"C:/Programs/SlicerElastix/Elastix/")
#
# Input
#
self.inputCollapsibleButton = ctk.ctkCollapsibleButton()
self.inputCollapsibleButton.text = "Input"
self.layout.addWidget(self.inputCollapsibleButton)
# Layout within the input collapsible button
self.inputFormLayout = qt.QFormLayout(self.inputCollapsibleButton)
#
# rgb volume selector
#
self.inputVolumeSelector = slicer.qMRMLNodeComboBox()
self.inputVolumeSelector.nodeTypes = ["vtkMRMLVectorVolumeNode"]
self.inputVolumeSelector.selectNodeUponCreation = True
self.inputVolumeSelector.addEnabled = False
self.inputVolumeSelector.removeEnabled = False
self.inputVolumeSelector.noneEnabled = False
self.inputVolumeSelector.showHidden = False
self.inputVolumeSelector.showChildNodeTypes = False
self.inputVolumeSelector.setMRMLScene(slicer.mrmlScene)
self.inputFormLayout.addRow("Fixed volume: ", self.inputVolumeSelector)
###
"""
self.fixedVolumeMaskSelector = slicer.qMRMLNodeComboBox()
self.fixedVolumeMaskSelector.nodeTypes = ["vtkMRMLLabelMapVolumeNode"]
self.fixedVolumeMaskSelector.addEnabled = False
self.fixedVolumeMaskSelector.removeEnabled = False
self.fixedVolumeMaskSelector.noneEnabled = True
self.fixedVolumeMaskSelector.showHidden = False
self.fixedVolumeMaskSelector.showChildNodeTypes = False
self.fixedVolumeMaskSelector.setMRMLScene( slicer.mrmlScene )
self.inputFormLayout.addRow("Fixed volume mask: ", self.fixedVolumeMaskSelector)
self.movingVolumeSelector = slicer.qMRMLNodeComboBox()
self.movingVolumeSelector.nodeTypes = ["vtkMRMLScalarVolumeNode"]
self.movingVolumeSelector.selectNodeUponCreation = True
self.movingVolumeSelector.addEnabled = False
self.movingVolumeSelector.removeEnabled = False
self.movingVolumeSelector.noneEnabled = False
self.movingVolumeSelector.showHidden = False
self.movingVolumeSelector.showChildNodeTypes = False
self.movingVolumeSelector.setMRMLScene( slicer.mrmlScene )
self.inputFormLayout.addRow("Moving volume: ", self.movingVolumeSelector)
#
# moving volume mask selector
#
self.movingVolumeMaskSelector = slicer.qMRMLNodeComboBox()
self.movingVolumeMaskSelector.nodeTypes = ["vtkMRMLLabelMapVolumeNode"]
self.movingVolumeMaskSelector.selectNodeUponCreation = True
self.movingVolumeMaskSelector.addEnabled = False
self.movingVolumeMaskSelector.removeEnabled = False
self.movingVolumeMaskSelector.noneEnabled = True
self.movingVolumeMaskSelector.showHidden = False
self.movingVolumeMaskSelector.showChildNodeTypes = False
self.movingVolumeMaskSelector.setMRMLScene( slicer.mrmlScene )
self.movingVolumeMaskSelector.setToolTip("Moving volume mask")
self.inputFormLayout.addRow("Moving volume mask: ", self.movingVolumeMaskSelector)
"""
#
#Output
#
self.outputCollapsibleButton = ctk.ctkCollapsibleButton()
self.outputCollapsibleButton.text = "Output"
self.layout.addWidget(self.outputCollapsibleButton)
# Layout within the output collapsible button
self.outputFormLayout = qt.QFormLayout(self.outputCollapsibleButton)
#
# output volume selector
#
self.outputVolumeSelector = slicer.qMRMLNodeComboBox()
self.outputVolumeSelector.nodeTypes = ["vtkMRMLScalarVolumeNode"]
self.outputVolumeSelector.selectNodeUponCreation = True
self.outputVolumeSelector.addEnabled = True
self.outputVolumeSelector.renameEnabled = True
self.outputVolumeSelector.removeEnabled = True
self.outputVolumeSelector.noneEnabled = True
self.outputVolumeSelector.showHidden = False
self.outputVolumeSelector.showChildNodeTypes = False
self.outputVolumeSelector.setMRMLScene(slicer.mrmlScene)
self.outputFormLayout.addRow("Output volume: ",
self.outputVolumeSelector)
"""
#
# output transform selector
#
self.outputTransformSelector = slicer.qMRMLNodeComboBox()
self.outputTransformSelector.nodeTypes = ["vtkMRMLTransformNode"]
self.outputTransformSelector.selectNodeUponCreation = True
self.outputTransformSelector.addEnabled = True
self.outputTransformSelector.renameEnabled = True
self.outputTransformSelector.removeEnabled = True
self.outputTransformSelector.noneEnabled = True
self.outputTransformSelector.showHidden = False
self.outputTransformSelector.showChildNodeTypes = False
self.outputTransformSelector.setMRMLScene( slicer.mrmlScene )
self.outputFormLayout.addRow("Output transform: ", self.outputTransformSelector)
"""
# Add vertical spacer
self.layout.addStretch(1)
#
# Status and Progress
#
statusLabel = qt.QLabel("Status: ")
self.currentStatusLabel = qt.QLabel("Idle")
hlayout = qt.QHBoxLayout()
hlayout.addStretch(1)
hlayout.addWidget(statusLabel)
hlayout.addWidget(self.currentStatusLabel)
self.layout.addLayout(hlayout)
self.progress = qt.QProgressBar()
self.progress.setRange(0, 1000)
self.progress.setValue(0)
self.layout.addWidget(self.progress)
self.progress.hide()
#Cancel
self.cancelButton = qt.QPushButton("Cancel")
self.cancelButton.toolTip = "Abort the algorithm."
self.cancelButton.enabled = False
# Apply button
self.applyButton = qt.QPushButton("Apply")
self.applyButton.toolTip = "Run the Radiology-Pathology Fusion."
self.applyButton.enabled = True
# Test button
self.testButton = qt.QPushButton("Test")
self.testButton.toolTip = "Text elastix."
self.testButton.enabled = True
hlayout = qt.QHBoxLayout()
hlayout.addWidget(self.testButton)
hlayout.addStretch(1)
hlayout.addWidget(self.cancelButton)
hlayout.addWidget(self.applyButton)
self.layout.addLayout(hlayout)
self.cancelButton.connect('clicked(bool)', self.onCancel)
self.applyButton.connect('clicked(bool)', self.onApply)
self.testButton.connect('clicked(bool)', self.onTest)
def setup(self):
ScriptedLoadableModuleWidget.setup(self)
self.logic = DualModalityCalibrationLogic()
# Instantiate and connect widgets
#
# Calibration Parameters Area
#
parametersCollapsibleButton = ctk.ctkCollapsibleButton()
parametersCollapsibleButton.text = "Calibration input and output transforms"
self.layout.addWidget(parametersCollapsibleButton)
# Layout within the dummy collapsible button
parametersFormLayout = qt.QFormLayout(parametersCollapsibleButton)
#
# Optical tracking system transform selector
#
self.opticalPointerSelectorLabel = qt.QLabel()
self.opticalPointerSelectorLabel.setText(
"OpPointerToOpRef Transform: ")
self.opticalPointerSelector = slicer.qMRMLNodeComboBox()
self.opticalPointerSelector.nodeTypes = ([
"vtkMRMLLinearTransformNode"
])
self.opticalPointerSelector.noneEnabled = False
self.opticalPointerSelector.addEnabled = False
self.opticalPointerSelector.removeEnabled = True
self.opticalPointerSelector.setMRMLScene(slicer.mrmlScene)
self.opticalPointerSelector.setToolTip(
"Pick a known transform corresponding to the optical pointer's coordinate frame"
)
parametersFormLayout.addRow(self.opticalPointerSelectorLabel,
self.opticalPointerSelector)
#
# Em tracking system transform selector
#
self.EmPointerSelectorLabel = qt.QLabel()
self.EmPointerSelectorLabel.setText("EmPointerToEmTracker Transform: ")
self.emPointerSelector = slicer.qMRMLNodeComboBox()
self.emPointerSelector.nodeTypes = (["vtkMRMLTransformNode"])
self.emPointerSelector.noneEnabled = False
self.emPointerSelector.addEnabled = False
self.emPointerSelector.removeEnabled = True
self.emPointerSelector.setMRMLScene(slicer.mrmlScene)
self.emPointerSelector.setToolTip(
"Pick a known transform corresponding to the Em pointer's coordinate frame"
)
parametersFormLayout.addRow(self.EmPointerSelectorLabel,
self.emPointerSelector)
#
# Initial landmark registration result transform selector
#
self.initialEmTrackerToOpRefSelectorLabel = qt.QLabel()
self.initialEmTrackerToOpRefSelectorLabel.setText(
"Initial EmTrackerToOpRef Transform: ")
self.initialEmTrackerToOpRefSelector = slicer.qMRMLNodeComboBox()
self.initialEmTrackerToOpRefSelector.nodeTypes = ([
"vtkMRMLTransformNode"
])
self.initialEmTrackerToOpRefSelector.noneEnabled = False
self.initialEmTrackerToOpRefSelector.addEnabled = True
self.initialEmTrackerToOpRefSelector.removeEnabled = True
self.initialEmTrackerToOpRefSelector.baseName = "EmTrackerToOpRefInitial"
self.initialEmTrackerToOpRefSelector.setMRMLScene(slicer.mrmlScene)
self.initialEmTrackerToOpRefSelector.setToolTip(
"Pick a known transform corresponding to the Em pointer's coordinate frame"
)
parametersFormLayout.addRow(self.initialEmTrackerToOpRefSelectorLabel,
self.initialEmTrackerToOpRefSelector)
self.outputEmTrackerToOpRefTransformSelectorLabel = qt.QLabel(
"Output EmTrackerToOpRef transform: ")
self.outputEmTrackerToOpRefTransformSelector = slicer.qMRMLNodeComboBox(
)
self.outputEmTrackerToOpRefTransformSelector.nodeTypes = ([
"vtkMRMLTransformNode"
])
self.outputEmTrackerToOpRefTransformSelector.noneEnabled = True
self.outputEmTrackerToOpRefTransformSelector.addEnabled = True
self.outputEmTrackerToOpRefTransformSelector.removeEnabled = True
self.outputEmTrackerToOpRefTransformSelector.baseName = "EmTrackerToOpRef"
self.outputEmTrackerToOpRefTransformSelector.setMRMLScene(
slicer.mrmlScene)
self.outputEmTrackerToOpRefTransformSelector.setToolTip(
"Select the transform to output the EmTrackerToOpRef calibration result to"
)
parametersFormLayout.addRow(
self.outputEmTrackerToOpRefTransformSelectorLabel,
self.outputEmTrackerToOpRefTransformSelector)
self.outputEmPointerGtruthToOpPointerTransformSelectorLabel = qt.QLabel(
"Output EmPointerGtruthToOpPointer transform: ")
self.outputEmPointerGtruthToOpPointerTransformSelector = slicer.qMRMLNodeComboBox(
)
self.outputEmPointerGtruthToOpPointerTransformSelector.nodeTypes = ([
"vtkMRMLTransformNode"
])
self.outputEmPointerGtruthToOpPointerTransformSelector.noneEnabled = True
self.outputEmPointerGtruthToOpPointerTransformSelector.addEnabled = True
self.outputEmPointerGtruthToOpPointerTransformSelector.removeEnabled = True
self.outputEmPointerGtruthToOpPointerTransformSelector.baseName = "EmPointerGtruthToOpPointer"
self.outputEmPointerGtruthToOpPointerTransformSelector.setMRMLScene(
slicer.mrmlScene)
self.outputEmPointerGtruthToOpPointerTransformSelector.setToolTip(
"Select the transform to output the EmPointerGtruthToOpPointer calibration result to"
)
parametersFormLayout.addRow(
self.outputEmPointerGtruthToOpPointerTransformSelectorLabel,
self.outputEmPointerGtruthToOpPointerTransformSelector)
# Select defaults (to make debugging easier)
opPointerToOpRefNode = slicer.util.getNode('OpPointerToOpRef')
if opPointerToOpRefNode:
self.opticalPointerSelector.setCurrentNode(opPointerToOpRefNode)
emPointerToEmTrackerNode = slicer.util.getNode('EmPointerToEmTracker')
if emPointerToEmTrackerNode:
self.emPointerSelector.setCurrentNode(emPointerToEmTrackerNode)
emTrackerToOpRefInitialNode = slicer.util.getNode(
'EmTrackerToOpRefInitial')
if emTrackerToOpRefInitialNode:
self.initialEmTrackerToOpRefSelector.setCurrentNode(
emTrackerToOpRefInitialNode)
emTrackerToOpRefOutputNode = slicer.util.getNode('EmTrackerToOpRef')
if emTrackerToOpRefOutputNode:
self.outputEmTrackerToOpRefTransformSelector.setCurrentNode(
emTrackerToOpRefOutputNode)
emPointerGtruthToOpPointerOutputNode = slicer.util.getNode(
'EmPointerGtruthToOpPointer')
if emPointerGtruthToOpPointerOutputNode:
self.outputEmPointerGtruthToOpPointerTransformSelector.setCurrentNode(
emPointerGtruthToOpPointerOutputNode)
#
# Controls Area
#
controlsCollapsibleButton = ctk.ctkCollapsibleButton()
controlsCollapsibleButton.text = "Controls"
self.layout.addWidget(controlsCollapsibleButton)
# Layout within the dummy collapsible button
controlsFormLayout = qt.QFormLayout(controlsCollapsibleButton)
#
# Number of data points to be collected input
#
self.numberDataPointsInputLabel = qt.QLabel()
self.numberDataPointsInputLabel.setText(
"Number of Collected Data Points:")
self.numberDataPointsInput = qt.QSpinBox()
self.numberDataPointsInput.maximum = 5000
self.numberDataPointsInput.minimum = 10
self.numberDataPointsInputLabel.setToolTip(
"Select how many sample points will be used in calculations")
controlsFormLayout.addRow(self.numberDataPointsInputLabel,
self.numberDataPointsInput)
#self.numberDataPoints = self.numberDataPointsInput.value
#
# Delay spinbox
#
self.delaySelectorLabel = qt.QLabel()
self.delaySelectorLabel.setText("Delay (seconds):")
self.delaySelector = qt.QSpinBox()
self.delaySelector.minimum = 1
self.delaySelector.maximum = 10
self.delaySelector.value = 5
self.delaySelector.setToolTip(
"Time to wait before starting data collection after clicking 'Start data collection' button"
)
controlsFormLayout.addRow(self.delaySelectorLabel, self.delaySelector)
#
# Start data collection button
#
self.startButton = qt.QPushButton("Start data collection")
self.startButton.toolTip = "Start collecting data that will be used in calculations"
self.startButton.enabled = True
self.startButton.connect('clicked(bool)', self.onStartDataCollection)
controlsFormLayout.addRow(self.startButton)
#
# Delay countdown timer
#
self.delayTimer = qt.QTimer()
self.delayTimerLabel = qt.QLabel()
self.delayTimer.setInterval(1000) # 1 second
self.delayTimer.setSingleShot(True)
self.delayTimer.connect('timeout()', self.onDelayTimerTimeout)
controlsFormLayout.addRow(self.delayTimerLabel)
#
# Data collection progress bar
#
self.collectionProgressBar = qt.QProgressBar()
self.collectionProgressBar.setRange(0, 100)
self.collectionProgressBar.setVisible(False)
controlsFormLayout.addRow(self.collectionProgressBar)
#
# Display Area
#
displayCollapsibleButton = ctk.ctkCollapsibleButton()
displayCollapsibleButton.text = "Calibration results"
self.layout.addWidget(displayCollapsibleButton)
# Layout within the dummy collapsible button
displayFormLayout = qt.QFormLayout(displayCollapsibleButton)
#
# Error metrics
#
self.transErrorLabel = qt.QLabel("Position error: N/A")
self.rotErrorLabel = qt.QLabel("Orientation error: N/A")
displayFormLayout.addRow(self.transErrorLabel)
displayFormLayout.addRow(self.rotErrorLabel)
# Add vertical spacer
self.layout.addStretch(1)
