def setup(self):
# Instantiate and connect widgets ...
# #
# # Reload and Test area
# #
# reloadCollapsibleButton = ctk.ctkCollapsibleButton()
# reloadCollapsibleButton.text = "Reload && Test"
# self.layout.addWidget(reloadCollapsibleButton)
# reloadFormLayout = qt.QFormLayout(reloadCollapsibleButton)
# # reload button
# # (use this during development, but remove it when delivering
# # your module to users)
# self.reloadButton = qt.QPushButton("Reload")
# self.reloadButton.toolTip = "Reload this module."
# self.reloadButton.name = "PortPlacement Reload"
# reloadFormLayout.addWidget(self.reloadButton)
# self.reloadButton.connect('clicked()', self.onReload)
# # reload and test button
# # (use this during development, but remove it when delivering
# # your module to users)
# self.reloadAndTestButton = qt.QPushButton("Reload and Test")
# self.reloadAndTestButton.toolTip = "Reload this module and then run the self tests."
# reloadFormLayout.addWidget(self.reloadAndTestButton)
# self.reloadAndTestButton.connect('clicked()', self.onReloadAndTest)
#
# Ports Area
#
portsCollapsibleButton = ctk.ctkCollapsibleButton()
portsCollapsibleButton.text = "Surgical Ports"
self.layout.addWidget(portsCollapsibleButton)
portsFormLayout = qt.QFormLayout(portsCollapsibleButton)
#
# port fiducial list selector
#
self.portListSelector = slicer.qMRMLNodeComboBox()
self.portListSelector.nodeTypes = ["vtkMRMLMarkupsFiducialNode"]
self.portListSelector.addEnabled = False
self.portListSelector.removeEnabled = False
self.portListSelector.noneEnabled = True
self.portListSelector.setMRMLScene(slicer.mrmlScene)
self.portListSelector.setToolTip("Add surgical ports from a markups node.")
portsFormLayout.addRow("Markups node of surgical ports", self.portListSelector)
#
# Add Port List button
#
self.addPortListButton = qt.QPushButton("Set Port Markups Node")
self.addPortListButton.enabled = False
portsFormLayout.addRow(self.addPortListButton)
#
# Port table
#
self.portsTable = qt.QTableView()
self.portsTableModel = qt.QStandardItemModel()
self.portsTable.setModel(self.portsTableModel)
portsFormLayout.addRow(self.portsTable)
#
# Remove Port button
#
self.removePortButton = qt.QPushButton("Remove Selected Port")
self.removePortButton.enabled = False
portsFormLayout.addRow(self.removePortButton)
#
# Target area
#
targetCollapsibleButton = ctk.ctkCollapsibleButton()
targetCollapsibleButton.text = "Surgical Target"
self.layout.addWidget(targetCollapsibleButton)
targetFormLayout = qt.QFormLayout(targetCollapsibleButton)
#
# target selector
#
self.targetSelector = slicer.qMRMLNodeComboBox()
self.targetSelector.nodeTypes = ["vtkMRMLMarkupsFiducialNode"]
self.targetSelector.addEnabled = False
self.targetSelector.removeEnabled = False
self.targetSelector.noneEnabled = True
self.targetSelector.setMRMLScene(slicer.mrmlScene)
self.targetSelector.setToolTip("Pick the surgical target that the tools should face.")
targetFormLayout.addRow("Surgical Target Fiducial", self.targetSelector)
#
# Retarget button
#
self.retargetButton = qt.QPushButton("Aim Tools at Target")
self.retargetButton.toolTip = "Reset tool orientations to face target fiducial"
self.retargetButton.enabled = False
targetFormLayout.addRow(self.retargetButton)
#
# Port Tool Display Options
#
toolsCollapsibleButton = ctk.ctkCollapsibleButton()
toolsCollapsibleButton.text = "Port Tool Display Options"
self.layout.addWidget(toolsCollapsibleButton)
toolsFormLayout = qt.QFormLayout(toolsCollapsibleButton)
#
# Transform sliders
#
self.transformSliders = slicer.qMRMLTransformSliders()
self.transformSliders.TypeOfTransform = slicer.qMRMLTransformSliders.ROTATION
self.transformSliders.CoordinateReference = slicer.qMRMLTransformSliders.LOCAL
self.transformSliders.Title = 'Tool Orientation'
self.transformSliders.minMaxVisible = False
toolsFormLayout.addRow(self.transformSliders)
#
# radius spin box
#
self.radiusSpinBox = qt.QDoubleSpinBox()
self.radiusSpinBox.setMinimum(0.0)
self.radiusSpinBox.setMaximum(10.0)
self.radiusSpinBox.setValue(2.0)
toolsFormLayout.addRow("Tool radius", self.radiusSpinBox)
#
# length spin box
#
self.lengthSpinBox = qt.QDoubleSpinBox()
self.lengthSpinBox.setMinimum(0.0)
self.lengthSpinBox.setMaximum(250.0)
self.lengthSpinBox.setValue(150.0)
toolsFormLayout.addRow("Tool length", self.lengthSpinBox)
# connections
self.portListSelector.connect('currentNodeChanged(bool)', self.onPortListSelectorChanged)
self.targetSelector.connect('currentNodeChanged(bool)', self.onTargetSelectorChanged)
self.addPortListButton.connect('clicked(bool)', self.onAddPortListButton)
self.removePortButton.connect('clicked(bool)', self.onRemovePortButton)
self.retargetButton.connect('clicked(bool)', self.onRetargetButton)
self.radiusSpinBox.connect('valueChanged(double)', self.onToolShapeChanged)
self.lengthSpinBox.connect('valueChanged(double)', self.onToolShapeChanged)
# Add vertical spacer
self.layout.addStretch(1)
# Add observer to scene for removal of fiducial nodes
self.sceneObserverTag = slicer.mrmlScene.AddObserver(slicer.mrmlScene.NodeRemovedEvent,
self.onNodeRemoved)
# instantiate port placement module logic
self.logic = PortPlacementLogic()
self.currentMarkupsNode = None
self.onMarkupAddedTag = None
def setup(self):
ScriptedLoadableModuleWidget.setup(self)
# Instantiate and connect widgets ...
#
# Parameters Area
#
parametersCollapsibleButton = ctk.ctkCollapsibleButton()
parametersCollapsibleButton.text = "Parameters"
self.layout.addWidget(parametersCollapsibleButton)
# Layout within the dummy collapsible button
parametersFormLayout = qt.QFormLayout(parametersCollapsibleButton)
#
# input volume selector
#
self.inputSelector = slicer.qMRMLNodeComboBox()
self.inputSelector.nodeTypes = (("vtkMRMLScalarVolumeNode"), "")
self.inputSelector.addAttribute("vtkMRMLScalarVolumeNode", "LabelMap", 0)
self.inputSelector.selectNodeUponCreation = True
self.inputSelector.addEnabled = False
self.inputSelector.removeEnabled = False
self.inputSelector.noneEnabled = False
self.inputSelector.showHidden = False
self.inputSelector.showChildNodeTypes = False
self.inputSelector.setMRMLScene(slicer.mrmlScene)
self.inputSelector.setToolTip("Pick the input to the algorithm.")
parametersFormLayout.addRow("Input Volume: ", self.inputSelector)
#
# output volume selector
#
self.outputSelector = slicer.qMRMLNodeComboBox()
self.outputSelector.nodeTypes = (("vtkMRMLScalarVolumeNode"), "")
self.outputSelector.addAttribute("vtkMRMLScalarVolumeNode", "LabelMap", 0)
self.outputSelector.selectNodeUponCreation = False
self.outputSelector.addEnabled = True
self.outputSelector.removeEnabled = True
self.outputSelector.noneEnabled = False
self.outputSelector.showHidden = False
self.outputSelector.showChildNodeTypes = False
self.outputSelector.setMRMLScene(slicer.mrmlScene)
self.outputSelector.setToolTip("Pick the output to the algorithm.")
parametersFormLayout.addRow("Output Volume: ", self.outputSelector)
#
# check box to trigger taking screen shots for later use in tutorials
#
self.enableScreenshotsFlagCheckBox = qt.QCheckBox()
self.enableScreenshotsFlagCheckBox.checked = 0
self.enableScreenshotsFlagCheckBox.setToolTip("If checked, take screen shots for tutorials. Use Save Data to write them to disk.")
parametersFormLayout.addRow("Enable Screenshots", self.enableScreenshotsFlagCheckBox)
#
# scale factor for screen shots
#
self.screenshotScaleFactorSliderWidget = ctk.ctkSliderWidget()
self.screenshotScaleFactorSliderWidget.singleStep = 1.0
self.screenshotScaleFactorSliderWidget.minimum = 1.0
self.screenshotScaleFactorSliderWidget.maximum = 50.0
self.screenshotScaleFactorSliderWidget.value = 1.0
self.screenshotScaleFactorSliderWidget.setToolTip("Set scale factor for the screen shots.")
parametersFormLayout.addRow("Screenshot scale factor", self.screenshotScaleFactorSliderWidget)
#
# Apply Button
#
self.applyButton = qt.QPushButton("Apply")
self.applyButton.toolTip = "Run the algorithm."
self.applyButton.enabled = False
parametersFormLayout.addRow(self.applyButton)
# connections
self.applyButton.connect('clicked(bool)', self.onApplyButton)
self.inputSelector.connect("currentNodeChanged(vtkMRMLNode*)", self.onSelect)
self.outputSelector.connect("currentNodeChanged(vtkMRMLNode*)", self.onSelect)
# Add vertical spacer
# self.layout.addStretch(1)
#
# Load Data
#
dm = DataManager()
loadDataCollapsibleButton = ctk.ctkCollapsibleButton()
loadDataCollapsibleButton.text = "Load Data"
self.layout.addWidget(loadDataCollapsibleButton)
loadDataFormLayout = qt.QFormLayout(loadDataCollapsibleButton)
# Load MRI Button
self.loadMRIButton = qt.QPushButton("Load MRI")
self.loadMRIButton.toolTip = "Load the MRI File."
self.loadMRIButton.name = "LoadMRI"
loadDataFormLayout.addWidget(self.loadMRIButton)
self.loadMRIButton.connect('clicked()', dm.loadMRI)
# Load Histology Button
self.loadHistologyButton = qt.QPushButton("Load Histology")
self.loadHistologyButton.toolTip = "Load the Histology File."
self.loadHistologyButton.name = "LoadHistology"
loadDataFormLayout.addWidget(self.loadHistologyButton)
self.loadHistologyButton.connect('clicked()', dm.loadHistology)
'''lm = slicer.app.layoutManager()
red = lm.sliceWidget('Red')
redLogic = red.sliceLogic()
# Print current slice offset position
print redLogic.GetSliceOffset()
# Change slice position
redLogic.SetSliceOffset(20)'''
self.alignButton = qt.QPushButton("Align Volumes")
self.alignButton.toolTip = "Rotate to Volume Plane."
self.alignButton.name = "AlignVolumes"
loadDataFormLayout.addWidget(self.alignButton)
self.alignButton.connect('clicked()', dm.alignSlices)
self.positionSliderWidget = slicer.qMRMLTransformSliders()
self.positionSliderWidget.Title = 'Position'
self.positionSliderWidget.TypeOfTransform = slicer.qMRMLTransformSliders.TRANSLATION
self.positionSliderWidget.CoordinateReference = slicer.qMRMLTransformSliders.LOCAL
self.positionSliderWidget.setMRMLScene(slicer.mrmlScene)
dm.setPositionSliderWidget(self.positionSliderWidget)
#self.positionSliderWidget.setMRMLTransformNode(slicer.util.getNode(self.transformNode.GetID()))
loadDataFormLayout.addRow("Translation", self.positionSliderWidget)
self.orientationSliderWidget = slicer.qMRMLTransformSliders()
self.orientationSliderWidget.Title = 'Orientation'
self.orientationSliderWidget.setMRMLScene(slicer.mrmlScene)
# Setting of qMRMLTransformSliders.TypeOfTransform is not robust: it has to be set after setMRMLScene and
# has to be set twice (with setting the type to something else in between).
# Therefore the following 3 lines are needed, and they are needed here:
self.orientationSliderWidget.TypeOfTransform = slicer.qMRMLTransformSliders.ROTATION
self.orientationSliderWidget.TypeOfTransform = slicer.qMRMLTransformSliders.TRANSLATION
self.orientationSliderWidget.TypeOfTransform = slicer.qMRMLTransformSliders.ROTATION
self.orientationSliderWidget.CoordinateReference=slicer.qMRMLTransformSliders.LOCAL
self.orientationSliderWidget.minMaxVisible = False
dm.setOrientationSliderWidget(self.orientationSliderWidget)
#self.orientationSliderWidget.setMRMLTransformNode(self.getPivotToRasTransformNode())
loadDataFormLayout.addRow("Orientation", self.orientationSliderWidget)
#
# Bounding Box
#
boundingBoxCollapsibleButton = ctk.ctkCollapsibleButton()
boundingBoxCollapsibleButton.text = "Mark Extents"
self.layout.addWidget(boundingBoxCollapsibleButton)
boundingBoxFormLayout = qt.QFormLayout(boundingBoxCollapsibleButton)
#
# ROI definition
#
roiDefintitionCollapsibleButton = ctk.ctkCollapsibleButton()
roiDefintitionCollapsibleButton.text = "ROI definition"
self.layout.addWidget(roiDefintitionCollapsibleButton)
roiDefintitionFormLayout = qt.QFormLayout(roiDefintitionCollapsibleButton)
roiManager = ROIManager(dm)
# Mark Prostate Button
self.markProstateButton = qt.QPushButton("Mark Prostate")
self.markProstateButton.toolTip = "Mark the boundaries of the prostate."
self.markProstateButton.name = "MarkProstate"
roiDefintitionFormLayout.addWidget(self.markProstateButton)
self.markProstateButton.connect('clicked()', roiManager.markProstate)
# Mark Urethra Button
self.markUrethraButton = qt.QPushButton("Mark Urethra")
self.markUrethraButton.toolTip = "Mark the boundaries of the urethra."
self.markUrethraButton.name = "MarkUrethra"
roiDefintitionFormLayout.addWidget(self.markUrethraButton)
self.markUrethraButton.connect('clicked()', roiManager.markUrethra)
#
# PET/MR alignment
#
petMRIAlignmentCollapsibleButton = ctk.ctkCollapsibleButton()
petMRIAlignmentCollapsibleButton.text = "PET/MR alignment"
self.layout.addWidget(petMRIAlignmentCollapsibleButton)
petMRAlignmentFormLayout = qt.QFormLayout(petMRIAlignmentCollapsibleButton)
#
# Landmarking on histology and PET/MR
#
landmarksCollapsibleButton = ctk.ctkCollapsibleButton()
landmarksCollapsibleButton.text = "Set Landmarks"
self.layout.addWidget(landmarksCollapsibleButton)
landmarksFormLayout = qt.QFormLayout(landmarksCollapsibleButton)
landmarkManager = LandmarkManager(dm)
# Set MRI Landmarks Button
self.switchToLandmarksLayoutButton = qt.QPushButton("Switch to Landmarks Layout")
self.switchToLandmarksLayoutButton.toolTip = "Switch to Landmarks Layout"
self.switchToLandmarksLayoutButton.name = "SwitchToLandmarksLayout"
landmarksFormLayout.addWidget(self.switchToLandmarksLayoutButton)
self.switchToLandmarksLayoutButton.connect('clicked()', landmarkManager.setLayout)
self.setMRILandmarksButton = qt.QPushButton("Set MRI Landmarks")
self.setMRILandmarksButton.toolTip = "Set MRI Landmarks"
self.setMRILandmarksButton.name = "SetMRILandmarks"
landmarksFormLayout.addWidget(self.setMRILandmarksButton)
self.setMRILandmarksButton.connect('clicked()', landmarkManager.setLandmarksForMRI)
self.finishedMRIButton = qt.QPushButton("Finished MRI")
self.finishedMRIButton.toolTip = "Finished MRI Landmarks"
self.finishedMRIButton.name = "FinishedMRILandmarks"
landmarksFormLayout.addWidget(self.finishedMRIButton)
self.finishedMRIButton.connect('clicked()', landmarkManager.setMouseModeBack)
# Set Histology Landmarks Button
self.setHistoLandmarksButton = qt.QPushButton("Set Histology Landmarks")
self.setHistoLandmarksButton.toolTip = "Set Histology Landmarks"
self.setHistoLandmarksButton.name = "SetHistoLandmarks"
landmarksFormLayout.addWidget(self.setHistoLandmarksButton)
self.setHistoLandmarksButton.connect('clicked()', landmarkManager.setLandmarksForHisto)
self.finishedHistoButton = qt.QPushButton("Finished Histo")
self.finishedHistoButton.toolTip = "Finished MRI Landmarks"
self.finishedHistoButton.name = "FinishedMRILandmarks"
landmarksFormLayout.addWidget(self.finishedHistoButton)
self.finishedHistoButton.connect('clicked()', landmarkManager.setMouseModeBack)
#
# Registration Optimization
#
registrationCollapsibleButton = ctk.ctkCollapsibleButton()
registrationCollapsibleButton.text = "Optimize Registration"
self.layout.addWidget(registrationCollapsibleButton)
registrationFormLayout = qt.QFormLayout(registrationCollapsibleButton)
def setup(self):
# Collapsible button
self.centrarCollapsibleButton = ctk.ctkCollapsibleButton()
self.centrarCollapsibleButton.text = u"Centrar imagen y guardar transformación"
self.layout.addWidget(self.centrarCollapsibleButton)
# Layout within the collapsible button
self.centrarLayout = qt.QFormLayout(self.centrarCollapsibleButton)
#selector de imgen a centrar
self.imagenSelector = slicer.qMRMLNodeComboBox()
self.imagenSelector.objectName = 'imagenSelector'
self.imagenSelector.toolTip = 'Seleccione la imagen que desea centrar'
self.imagenSelector.nodeTypes = ['vtkMRMLScalarVolumeNode']
self.imagenSelector.noneEnabled = True
self.imagenSelector.addEnabled = False # Se quita la posibilidad al usuario de crear un nuevo nodo con este widget
self.imagenSelector.removeEnabled = False # Se le quita al usuario la posibilidad de eliminar el nodo seleccionado en ese momento
## self.imagenSelector.connect('currentNodeChanged(bool)', self.enableOrDisableCentrarButton)
self.imagenSelector.setMRMLScene(slicer.mrmlScene)
self.centrarLayout.addRow("Volumen a centrar:", self.imagenSelector)
self.parent.connect('mrmlSceneChanged(vtkMRMLScene*)',
self.imagenSelector, 'setMRMLScene(vtkMRMLScene*)')
#Boton centrar
self.centrarButton = qt.QPushButton("Centrar")
self.centrarButton.toolTip = u"Centre la imagen y guarde la transoformación de sentrado y su transformada inversa"
self.centrarLayout.addWidget(self.centrarButton)
self.centrarButton.connect('clicked(bool)', self.onCentrar)
self.centrarButton.enabled = True
self.layout.addStretch(1)
# Collapsible button
self.registrarCollapsibleButton = ctk.ctkCollapsibleButton()
self.registrarCollapsibleButton.text = u"Registrar imágenes"
self.layout.addWidget(self.registrarCollapsibleButton)
# Layout within the collapsible button
self.registrarLayout = qt.QFormLayout(self.registrarCollapsibleButton)
#selector de transformacion
self.transformSelector = slicer.qMRMLNodeComboBox()
self.transformSelector.objectName = 'transformSelector'
self.transformSelector.toolTip = u'El método requiere que sólo centre la resonancia con este modulo'
self.transformSelector.nodeTypes = ['vtkMRMLLinearTransformNode']
self.transformSelector.noneEnabled = True
self.transformSelector.addEnabled = True # Se quita la posibilidad al usuario de crear un nuevo nodo con este widget
self.transformSelector.removeEnabled = True # Se le quita al usuario la posibilidad de eliminar el nodo seleccionado en ese momento
## self.transformSelector.connect('currentNodeChanged(bool)', self.enableOrDisableRegistrarButton)
self.transformSelector.setMRMLScene(slicer.mrmlScene)
self.registrarLayout.addRow("Transformacion de entrada:",
self.transformSelector)
self.parent.connect('mrmlSceneChanged(vtkMRMLScene*)',
self.transformSelector,
'setMRMLScene(vtkMRMLScene*)')
#selector de imgen fija
self.imagenFijaSelector = slicer.qMRMLNodeComboBox()
self.imagenFijaSelector.objectName = 'imagenFijaSelector'
self.imagenFijaSelector.toolTip = 'Seleccione la imagen fija'
self.imagenFijaSelector.nodeTypes = ['vtkMRMLScalarVolumeNode']
self.imagenFijaSelector.noneEnabled = True
self.imagenFijaSelector.addEnabled = False # Se quita la posibilidad al usuario de crear un nuevo nodo con este widget
self.imagenFijaSelector.removeEnabled = False # Se le quita al usuario la posibilidad de eliminar el nodo seleccionado en ese momento
## self.imagenFijaSelector.connect('currentNodeChanged(bool)', self.enableOrDisableRegistrarButton)
self.imagenFijaSelector.setMRMLScene(slicer.mrmlScene)
self.registrarLayout.addRow("Imagen Fija:", self.imagenFijaSelector)
self.parent.connect('mrmlSceneChanged(vtkMRMLScene*)',
self.imagenFijaSelector,
'setMRMLScene(vtkMRMLScene*)')
#selector de imgen movil
self.imagenMovilSelector = slicer.qMRMLNodeComboBox()
self.imagenMovilSelector.objectName = 'imagenMovilSelector'
self.imagenMovilSelector.toolTip = u'Seleccione la imagen móvil'
self.imagenMovilSelector.nodeTypes = ['vtkMRMLScalarVolumeNode']
self.imagenMovilSelector.noneEnabled = True
self.imagenMovilSelector.addEnabled = False # Se quita la posibilidad al usuario de crear un nuevo nodo con este widget
self.imagenMovilSelector.removeEnabled = False # Se le quita al usuario la posibilidad de eliminar el nodo seleccionado en ese momento
## self.imagenMovilSelector.connect('currentNodeChanged(bool)', self.enableOrDisableRegistrarButton)
self.imagenMovilSelector.setMRMLScene(slicer.mrmlScene)
self.registrarLayout.addRow(u"Imagen Móvil:", self.imagenMovilSelector)
self.parent.connect('mrmlSceneChanged(vtkMRMLScene*)',
self.imagenMovilSelector,
'setMRMLScene(vtkMRMLScene*)')
#selector de imgen Salida
self.imagenSalidaSelector = slicer.qMRMLNodeComboBox()
self.imagenSalidaSelector.objectName = 'imagenMovilSelector'
self.imagenSalidaSelector.toolTip = u'Seleccione la imagen Salida'
self.imagenSalidaSelector.nodeTypes = ['vtkMRMLScalarVolumeNode']
self.imagenSalidaSelector.noneEnabled = True
self.imagenSalidaSelector.addEnabled = True # Se quita la posibilidad al usuario de crear un nuevo nodo con este widget
self.imagenSalidaSelector.removeEnabled = False # Se le quita al usuario la posibilidad de eliminar el nodo seleccionado en ese momento
## self.imagenMovilSelector.connect('currentNodeChanged(bool)', self.enableOrDisableRegistrarButton)
self.imagenSalidaSelector.setMRMLScene(slicer.mrmlScene)
self.registrarLayout.addRow(u"Imagen Salida:",
self.imagenSalidaSelector)
self.parent.connect('mrmlSceneChanged(vtkMRMLScene*)',
self.imagenSalidaSelector,
'setMRMLScene(vtkMRMLScene*)')
#Boton ajustar
self.ajustarButton = qt.QPushButton(u"Pre-ajustar imágenes")
self.ajustarButton.toolTip = u"ajustar imágenes para facilitar el registro"
self.registrarLayout.addWidget(self.ajustarButton)
self.ajustarButton.connect('clicked(bool)', self.onAjustar)
self.ajustarButton.enabled = True
self.layout.addStretch(1)
#Boton registrar
self.registrarButton = qt.QPushButton(u"Registrar imágenes")
self.registrarButton.toolTip = u"Centre una imagen y guarde la transformación de centrado y su inversa"
self.registrarLayout.addWidget(self.registrarButton)
self.registrarButton.connect('clicked(bool)', self.onRegistrar)
self.registrarButton.enabled = True
self.layout.addStretch(1)
# Collapsible button
#self.ajustarCollapsibleButton = ctk.ctkCollapsibleButton()
#self.ajustarCollapsibleButton.text = u"Preajustar imágenes"
#self.layout.addWidget(self.ajustarCollapsibleButton)
self.ajustarDialog = qt.QDialog()
#self.ajustarDialog.rejected.connect(self.onCancelarPreajuste)
#self.ajustarDialog.accepted.connect(self.onAplicarPreajuste)
# Layout within the collapsible button
self.ajustarLayout = qt.QFormLayout(self.ajustarDialog)
#sliders para de desplazamiento la posicion de la imagen movil
self.transformTraslationSliders = slicer.qMRMLTransformSliders()
self.transformTraslationSliders.toolTip = u"Desplace para trasladar la imagen móvil"
self.transformTraslationSliders.Title = u'Traslación'
self.transformTraslationSliders.TypeOfTransform = self.transformTraslationSliders.TRANSLATION
self.ajustarLayout.addRow(self.transformTraslationSliders)
#sliders para de desplazamiento la posicion de la imagen movil
self.transformRotationSliders = slicer.qMRMLTransformSliders()
self.transformRotationSliders.toolTip = u"Desplace para rotar la imagen móvil"
self.transformRotationSliders.TypeOfTransform = self.transformRotationSliders.ROTATION
self.transformRotationSliders.Title = u'Rotación'
self.transformRotationSliders.LRLabel = 'Sagital'
self.transformRotationSliders.PALabel = 'Coronal'
self.transformRotationSliders.ISLabel = 'Axial'
self.transformRotationSliders.minMaxVisible = False
self.ajustarLayout.addRow(self.transformRotationSliders)
self.cancelarButton = qt.QPushButton(u"Cancelar")
self.cancelarButton.toolTip = u"Devuelve la imagen movil al estado inicial del preajuste"
self.ajustarLayout.addWidget(self.cancelarButton)
self.cancelarButton.connect('clicked(bool)', self.onCancelarPreajuste)
self.cancelarButton.enabled = True
self.capplyButton = qt.QPushButton(u"Aplicar")
self.capplyButton.toolTip = u"Aplica el preajuste"
self.ajustarLayout.addWidget(self.capplyButton)
self.capplyButton.connect('clicked(bool)', self.onAplicarPreajuste)
self.capplyButton.enabled = True
def setup(self):
ScriptedLoadableModuleWidget.setup(self)
# Instantiate and connect widgets ...
self.iconsPath = "H:/src/S4Mods/UltrasoundSimulator/UltrasoundSimulator/Resources/Icons"
# Used Icons
self.recordIcon = qt.QIcon(self.iconsPath + '/icon_Record.png')
self.playIcon = qt.QIcon(self.iconsPath + '/icon_Play.png')
self.stopIcon = qt.QIcon(self.iconsPath + '/icon_Stop.png')
self.restartIcon = qt.QIcon(self.iconsPath + '/icon_Restart.png')
self.openIcon = qt.QIcon(self.iconsPath + '/icon_Open.png')
#
# Parameters Area
#
self.calibrate1CollapsibleButton = ctk.ctkCollapsibleButton()
self.calibrate1CollapsibleButton.text = "Calibrate I"
self.layout.addWidget(self.calibrate1CollapsibleButton)
# Layout within the dummy collapsible button
calibrate1FormLayout = qt.QFormLayout(self.calibrate1CollapsibleButton)
#
# transform selector
#
self.IMUTransformSelector = slicer.qMRMLNodeComboBox()
self.IMUTransformSelector.nodeTypes = ["vtkMRMLLinearTransformNode"]
self.IMUTransformSelector.selectNodeUponCreation = False
self.IMUTransformSelector.addEnabled = False
self.IMUTransformSelector.removeEnabled = False
self.IMUTransformSelector.noneEnabled = False
self.IMUTransformSelector.showHidden = False
self.IMUTransformSelector.showChildNodeTypes = False
self.IMUTransformSelector.setMRMLScene( slicer.mrmlScene )
self.IMUTransformSelector.setToolTip( "Select the IMU orientation transform." )
calibrate1FormLayout.addRow("Orientation Transform: ", self.IMUTransformSelector)
# Calibration info
self.calibrationInstructionsGroupBox = qt.QGroupBox()
self.calibrationInstructionsGroupBox.setLayout(qt.QVBoxLayout())
self.calibrationInstructionsLabel01 = qt.QLabel("Initialize calibration")
self.calibrationInstructionsLabel01.setStyleSheet("QLabel {color: #000000; text-decoration: underline;}")
self.calibrationInstructionsGroupBox.layout().addWidget(self.calibrationInstructionsLabel01)
self.calibrationInstructionsLabel02 = qt.QLabel("Select Orientation Transform and press Start Calibration.")
self.calibrationInstructionsLabel02.setWordWrap(True)
self.calibrationInstructionsLabel02.setStyleSheet("QLabel {color: #A0A0A0;}")
self.calibrationInstructionsGroupBox.layout().addWidget(self.calibrationInstructionsLabel02)
self.calibrationInstructionsLabel11 = qt.QLabel("Place initial fiducials")
self.calibrationInstructionsLabel11.setStyleSheet("QLabel {color: #000000; text-decoration: underline;}")
self.calibrationInstructionsGroupBox.layout().addWidget(self.calibrationInstructionsLabel11)
self.calibrationInstructionsLabel12 = qt.QLabel("Scroll through the slice views, locate the sphere numbered 1, press the point in the center of the sphere.")
self.calibrationInstructionsLabel12.setWordWrap(True)
self.calibrationInstructionsLabel12.setStyleSheet("QLabel {color: #A0A0A0;}")
self.calibrationInstructionsGroupBox.layout().addWidget(self.calibrationInstructionsLabel12)
self.calibrationInstructionsLabel21 = qt.QLabel("Align calibration model")
self.calibrationInstructionsLabel21.setWordWrap(True)
self.calibrationInstructionsLabel21.setStyleSheet("QLabel {color: #000000; text-decoration: underline;}")
self.calibrationInstructionsGroupBox.layout().addWidget(self.calibrationInstructionsLabel21)
self.calibrationInstructionsLabel22 = qt.QLabel("Use sliders (LR, PA, IS) and the scroll wheel, in order to align the digit inside sphere 1. \nWhen finished, press Calibration Model Aligned.")
self.calibrationInstructionsLabel22.setWordWrap(True)
self.calibrationInstructionsLabel22.setStyleSheet("QLabel {color: #A0A0A0;}")
self.calibrationInstructionsGroupBox.layout().addWidget(self.calibrationInstructionsLabel22)
self.calibrationInstructionsLabel31 = qt.QLabel("Place calibration fiducials")
self.calibrationInstructionsLabel31.setWordWrap(True)
self.calibrationInstructionsLabel31.setStyleSheet("QLabel {color: #000000; text-decoration: underline;}")
self.calibrationInstructionsGroupBox.layout().addWidget(self.calibrationInstructionsLabel31)
self.calibrationInstructionsLabel32 = qt.QLabel("Scroll through the slice views, locate the sphere numbered 2, press the point in the center of the sphere.")
self.calibrationInstructionsLabel32.setWordWrap(True)
self.calibrationInstructionsLabel32.setStyleSheet("QLabel {color: #A0A0A0;}")
self.calibrationInstructionsGroupBox.layout().addWidget(self.calibrationInstructionsLabel32)
self.calibrationInstructionsLabel41 = qt.QLabel("Calculate calibration transform")
self.calibrationInstructionsLabel41.setWordWrap(True)
self.calibrationInstructionsLabel41.setStyleSheet("QLabel {color: #000000; text-decoration: underline;}")
self.calibrationInstructionsGroupBox.layout().addWidget(self.calibrationInstructionsLabel41)
self.calibrationInstructionsLabel42 = qt.QLabel("Press Calculate Calibration Transform")
self.calibrationInstructionsLabel42.setWordWrap(True)
self.calibrationInstructionsLabel42.setStyleSheet("QLabel {color: #A0A0A0;}")
self.calibrationInstructionsGroupBox.layout().addWidget(self.calibrationInstructionsLabel42)
calibrate1FormLayout.addRow("Calibration Steps:", self.calibrationInstructionsGroupBox)
buttonHeight = 35
# Start/Stop/Restart calibration Button
calibrateControlsLayout = qt.QHBoxLayout()
calibrate1FormLayout.addRow(calibrateControlsLayout)
self.startCalibrationButton = qt.QPushButton(" Start Calibration")
self.startCalibrationButton.setCheckable(False)
self.startCalibrationButton.setIcon(self.playIcon)
self.startCalibrationButton.setEnabled(False)
self.startCalibrationButton.setToolTip("Start calibration of the Ultrasound Simulator")
self.startCalibrationButton.setSizePolicy(qt.QSizePolicy.Expanding, qt.QSizePolicy.Expanding)
self.startCalibrationButton.setFixedHeight(buttonHeight)
calibrateControlsLayout.addWidget(self.startCalibrationButton)
self.stopCalibrationButton = qt.QPushButton(" Stop Calibration")
self.stopCalibrationButton.setCheckable(False)
self.stopCalibrationButton.setIcon(self.stopIcon)
self.stopCalibrationButton.setEnabled(False)
self.stopCalibrationButton.setToolTip("Stop calibration of the Ultrasound Simulator")
self.stopCalibrationButton.setSizePolicy(qt.QSizePolicy.Expanding, qt.QSizePolicy.Expanding)
self.stopCalibrationButton.setFixedHeight(buttonHeight)
calibrateControlsLayout.addWidget(self.stopCalibrationButton)
self.restartCalibrationButton = qt.QPushButton(" Restart Calibration")
self.restartCalibrationButton.setCheckable(False)
self.restartCalibrationButton.setIcon(self.restartIcon)
self.restartCalibrationButton.setEnabled(False)
self.restartCalibrationButton.setToolTip("Restart calibration of the Ultrasound Simulator")
self.restartCalibrationButton.setSizePolicy(qt.QSizePolicy.Expanding, qt.QSizePolicy.Expanding)
self.restartCalibrationButton.setFixedHeight(buttonHeight)
calibrateControlsLayout.addWidget(self.restartCalibrationButton)
# qMRMLTransformSliders widget
self.w = slicer.qMRMLTransformSliders()
self.w.CoordinateReference = self.w.GLOBAL
self.w.TypeOfTransform = self.w.ROTATION
calibrate1FormLayout.addRow(self.w)
alignButtonLayout = qt.QHBoxLayout()
calibrate1FormLayout.addRow(alignButtonLayout)
self.alignedButton = qt.QPushButton("Calibration Model Aligned")
self.alignedButton.setCheckable(False)
self.alignedButton.setEnabled(False)
self.alignedButton.setToolTip("Calibration model aligned")
self.alignedButton.setSizePolicy(qt.QSizePolicy.Expanding, qt.QSizePolicy.Expanding)
self.alignedButton.setFixedHeight(buttonHeight)
alignButtonLayout.addWidget(self.alignedButton)
self.calculateTransformButton = qt.QPushButton("Calculate Calibration Transform")
self.calculateTransformButton.setCheckable(False)
self.calculateTransformButton.setEnabled(False)
self.calculateTransformButton.setToolTip("Calculate calibration transform")
self.calculateTransformButton.setSizePolicy(qt.QSizePolicy.Expanding, qt.QSizePolicy.Expanding)
self.calculateTransformButton.setFixedHeight(buttonHeight)
alignButtonLayout.addWidget(self.calculateTransformButton)
#
# Calibrate 2 Area
#
self.calibrate2CollapsibleButton = ctk.ctkCollapsibleButton()
self.calibrate2CollapsibleButton.text = "Calibrate II"
self.layout.addWidget(self.calibrate2CollapsibleButton)
# Layout within the dummy collapsible button
calibrate2FormLayout = qt.QFormLayout(self.calibrate2CollapsibleButton)
self.calibrate2Button = qt.QPushButton("Calibrate")
self.calibrate2Button.setCheckable(False)
self.calibrate2Button.setEnabled(True)
self.calibrate2Button.setSizePolicy(qt.QSizePolicy.Expanding, qt.QSizePolicy.Expanding)
self.calibrate2Button.setFixedHeight(buttonHeight)
calibrate2FormLayout.addWidget(self.calibrate2Button)
#
# Simulator Area
#
simulatorCollapsibleButton = ctk.ctkCollapsibleButton()
simulatorCollapsibleButton.text = "Simulate Ultrasound"
self.layout.addWidget(simulatorCollapsibleButton)
# Layout within the dummy collapsible button
simulatorFormLayout = qt.QFormLayout(simulatorCollapsibleButton)
self.calibrationStatusLabel = qt.QLabel("Run calibration!")
self.calibrationStatusLabel.setStyleSheet("QLabel {color: #FF0000;}")
simulatorFormLayout.addRow("Calibration Status: ", self.calibrationStatusLabel)
# Start/Stop/Restart calibration Button
simulatorControlsLayout = qt.QHBoxLayout()
simulatorFormLayout.addRow(simulatorControlsLayout)
self.loadSampleVolumeButton = qt.QPushButton(" Load Sample Volume")
self.loadSampleVolumeButton.setCheckable(False)
self.loadSampleVolumeButton.setEnabled(False)
self.loadSampleVolumeButton.setIcon(self.openIcon)
self.loadSampleVolumeButton.setToolTip("Load sample abdominal phantom")
self.loadSampleVolumeButton.setSizePolicy(qt.QSizePolicy.Expanding, qt.QSizePolicy.Expanding)
self.loadSampleVolumeButton.setFixedHeight(buttonHeight)
simulatorControlsLayout.addWidget(self.loadSampleVolumeButton)
self.runSimulatorButton = qt.QPushButton(" Run Simulator")
self.runSimulatorButton.setCheckable(False)
self.runSimulatorButton.setEnabled(False)
self.runSimulatorButton.setIcon(self.playIcon)
self.runSimulatorButton.setToolTip("Start the Ultrasound Simulator")
self.runSimulatorButton.setSizePolicy(qt.QSizePolicy.Expanding, qt.QSizePolicy.Expanding)
self.runSimulatorButton.setFixedHeight(buttonHeight)
simulatorControlsLayout.addWidget(self.runSimulatorButton)
# Connections
self.calibrate2Button.connect('clicked(bool)', self.onCalibrate2Button)
self.calculateTransformButton.connect('clicked(bool)', self.onCalculateTransformButton)
self.alignedButton.connect('clicked(bool)', self.onAlignedButton)
self.startCalibrationButton.connect('clicked(bool)', self.onStartCalibrationButton)
self.restartCalibrationButton.connect('clicked(bool)', self.onRestartCalibrationButton)
self.stopCalibrationButton.connect('clicked(bool)', self.onStopCalibrationButton)
self.IMUTransformSelector.connect("currentNodeChanged(vtkMRMLNode*)", self.onIMUTransformSelector)
self.loadSampleVolumeButton.connect('clicked(bool)', self.onLoadSampleVolumeButton)
self.runSimulatorButton.connect('clicked(bool)', self.onRunSimulatorButton)
# Logic and Node members
self.calibrationModelNode = None
self.calibrationModelDisplayNode = None
self.IMUTransformNode = None
self.startFiducialNode = None
self.endFiducialNode = None
self.crosshairNode = None
self.markupsModuleLogic = None
self.tempTransform = None
self.saveTransform = None
self.volumeCurrentlyLoaded = None
self.inverseTransform = None
self.finalTransform = None
self.translateTransform = None
self.maskVolumeNode = None
# Parameter members
self.nbrOfFiducialsPlaced = 0
self.nbrOfFiducialsToPlace = 3
# Bool memebers
self.calibrationInitialized = False
self.placingFiducials = False
self.layoutOneUpRedSliceView = False
self.tempTransformApplied = False
self.tempTransformAligned = False
# Calibration state
self.calibrationStateTimer = qt.QTimer()
self.calibrationStateTimer.timeout.connect(self.calibrationStateTimeOut)
self.currentCalibrationState = "PLACE_START_FIDUCIALS"
# Layout manager
self.applicationLogic = slicer.logic.vtkSlicerApplicationLogic()
self.lm = slicer.app.layoutManager()
# Left mouse click in Slice view observers
self.redSliceWidget = self.lm.sliceWidget('Red')
self.greenSliceWidget = self.lm.sliceWidget('Green')
self.yellowSliceWidget = self.lm.sliceWidget('Yellow')
self.redInteractor = self.redSliceWidget.sliceView().interactorStyle().GetInteractor()
self.greenInteractor = self.greenSliceWidget.sliceView().interactorStyle().GetInteractor()
self.yellowInteractor = self.yellowSliceWidget.sliceView().interactorStyle().GetInteractor()
self.redInteractorObserverID = -1
self.greenInteractorObserverID = -1
self.yellowInteractorObserverID = -1
self.redSliceLogic = self.redSliceWidget.sliceLogic()
self.redSliceNode = self.redSliceLogic.GetSliceNode()
self.redSliceFGLayer = self.redSliceLogic.GetForegroundLayer()
self.redSliceBGLayer = self.redSliceLogic.GetBackgroundLayer()
self.redSliceCompositeNode = self.redSliceLogic.GetSliceCompositeNode()
# For disabling mouse interaction
self.interactorObserverTags = []
self.mouseEvents = ( "LeftButtonPressEvent", "LeftButtonReleaseEvent",
"MiddleButtonPressEvent", "MiddleButtonReleaseEvent",
"RightButtonPressEvent", "RightButtonReleaseEvent",
"MouseMoveEvent", "KeyPressEvent", "EnterEvent", "LeaveEvent",
"MouseWheelForwardEvent", "MouseWheelBackwardEvent" )
# Refresh state
self.onIMUTransformSelector()
def setup(self):
ScriptedLoadableModuleWidget.setup(self)
# Instantiate and connect widgets ...
#
# Parameters Area
#
parametersCollapsibleButton = ctk.ctkCollapsibleButton()
parametersCollapsibleButton.text = "Parameters"
self.layout.addWidget(parametersCollapsibleButton)
# Layout within the dummy collapsible button
parametersFormLayout = qt.QFormLayout(parametersCollapsibleButton)
#
# input volume selector
#
self.inputSelector = slicer.qMRMLNodeComboBox()
self.inputSelector.nodeTypes = (("vtkMRMLScalarVolumeNode"), "")
self.inputSelector.addAttribute("vtkMRMLScalarVolumeNode", "LabelMap",
0)
self.inputSelector.selectNodeUponCreation = True
self.inputSelector.addEnabled = False
self.inputSelector.removeEnabled = False
self.inputSelector.noneEnabled = False
self.inputSelector.showHidden = False
self.inputSelector.showChildNodeTypes = False
self.inputSelector.setMRMLScene(slicer.mrmlScene)
self.inputSelector.setToolTip("Pick the input to the algorithm.")
parametersFormLayout.addRow("Input Volume: ", self.inputSelector)
#
# output volume selector
#
self.outputSelector = slicer.qMRMLNodeComboBox()
self.outputSelector.nodeTypes = (("vtkMRMLScalarVolumeNode"), "")
self.outputSelector.addAttribute("vtkMRMLScalarVolumeNode", "LabelMap",
0)
self.outputSelector.selectNodeUponCreation = False
self.outputSelector.addEnabled = True
self.outputSelector.removeEnabled = True
self.outputSelector.noneEnabled = False
self.outputSelector.showHidden = False
self.outputSelector.showChildNodeTypes = False
self.outputSelector.setMRMLScene(slicer.mrmlScene)
self.outputSelector.setToolTip("Pick the output to the algorithm.")
parametersFormLayout.addRow("Output Volume: ", self.outputSelector)
#
# check box to trigger taking screen shots for later use in tutorials
#
self.enableScreenshotsFlagCheckBox = qt.QCheckBox()
self.enableScreenshotsFlagCheckBox.checked = 0
self.enableScreenshotsFlagCheckBox.setToolTip(
"If checked, take screen shots for tutorials. Use Save Data to write them to disk."
)
parametersFormLayout.addRow("Enable Screenshots",
self.enableScreenshotsFlagCheckBox)
#
# scale factor for screen shots
#
self.screenshotScaleFactorSliderWidget = ctk.ctkSliderWidget()
self.screenshotScaleFactorSliderWidget.singleStep = 1.0
self.screenshotScaleFactorSliderWidget.minimum = 1.0
self.screenshotScaleFactorSliderWidget.maximum = 50.0
self.screenshotScaleFactorSliderWidget.value = 1.0
self.screenshotScaleFactorSliderWidget.setToolTip(
"Set scale factor for the screen shots.")
parametersFormLayout.addRow("Screenshot scale factor",
self.screenshotScaleFactorSliderWidget)
#
# Apply Button
#
self.applyButton = qt.QPushButton("Apply")
self.applyButton.toolTip = "Run the algorithm."
self.applyButton.enabled = False
parametersFormLayout.addRow(self.applyButton)
# connections
self.applyButton.connect('clicked(bool)', self.onApplyButton)
self.inputSelector.connect("currentNodeChanged(vtkMRMLNode*)",
self.onSelect)
self.outputSelector.connect("currentNodeChanged(vtkMRMLNode*)",
self.onSelect)
# Add vertical spacer
# self.layout.addStretch(1)
#
# Load Data
#
dm = DataManager()
loadDataCollapsibleButton = ctk.ctkCollapsibleButton()
loadDataCollapsibleButton.text = "Load Data"
self.layout.addWidget(loadDataCollapsibleButton)
loadDataFormLayout = qt.QFormLayout(loadDataCollapsibleButton)
# Load MRI Button
self.loadMRIButton = qt.QPushButton("Load MRI")
self.loadMRIButton.toolTip = "Load the MRI File."
self.loadMRIButton.name = "LoadMRI"
loadDataFormLayout.addWidget(self.loadMRIButton)
self.loadMRIButton.connect('clicked()', dm.loadMRI)
# Load Histology Button
self.loadHistologyButton = qt.QPushButton("Load Histology")
self.loadHistologyButton.toolTip = "Load the Histology File."
self.loadHistologyButton.name = "LoadHistology"
loadDataFormLayout.addWidget(self.loadHistologyButton)
self.loadHistologyButton.connect('clicked()', dm.loadHistology)
'''lm = slicer.app.layoutManager()
red = lm.sliceWidget('Red')
redLogic = red.sliceLogic()
# Print current slice offset position
print redLogic.GetSliceOffset()
# Change slice position
redLogic.SetSliceOffset(20)'''
self.alignButton = qt.QPushButton("Align Volumes")
self.alignButton.toolTip = "Rotate to Volume Plane."
self.alignButton.name = "AlignVolumes"
loadDataFormLayout.addWidget(self.alignButton)
self.alignButton.connect('clicked()', dm.alignSlices)
self.positionSliderWidget = slicer.qMRMLTransformSliders()
self.positionSliderWidget.Title = 'Position'
self.positionSliderWidget.TypeOfTransform = slicer.qMRMLTransformSliders.TRANSLATION
self.positionSliderWidget.CoordinateReference = slicer.qMRMLTransformSliders.LOCAL
self.positionSliderWidget.setMRMLScene(slicer.mrmlScene)
dm.setPositionSliderWidget(self.positionSliderWidget)
#self.positionSliderWidget.setMRMLTransformNode(slicer.util.getNode(self.transformNode.GetID()))
loadDataFormLayout.addRow("Translation", self.positionSliderWidget)
self.orientationSliderWidget = slicer.qMRMLTransformSliders()
self.orientationSliderWidget.Title = 'Orientation'
self.orientationSliderWidget.setMRMLScene(slicer.mrmlScene)
# Setting of qMRMLTransformSliders.TypeOfTransform is not robust: it has to be set after setMRMLScene and
# has to be set twice (with setting the type to something else in between).
# Therefore the following 3 lines are needed, and they are needed here:
self.orientationSliderWidget.TypeOfTransform = slicer.qMRMLTransformSliders.ROTATION
self.orientationSliderWidget.TypeOfTransform = slicer.qMRMLTransformSliders.TRANSLATION
self.orientationSliderWidget.TypeOfTransform = slicer.qMRMLTransformSliders.ROTATION
self.orientationSliderWidget.CoordinateReference = slicer.qMRMLTransformSliders.LOCAL
self.orientationSliderWidget.minMaxVisible = False
dm.setOrientationSliderWidget(self.orientationSliderWidget)
#self.orientationSliderWidget.setMRMLTransformNode(self.getPivotToRasTransformNode())
loadDataFormLayout.addRow("Orientation", self.orientationSliderWidget)
#
# Bounding Box
#
boundingBoxCollapsibleButton = ctk.ctkCollapsibleButton()
boundingBoxCollapsibleButton.text = "Mark Extents"
self.layout.addWidget(boundingBoxCollapsibleButton)
boundingBoxFormLayout = qt.QFormLayout(boundingBoxCollapsibleButton)
#
# ROI definition
#
roiDefintitionCollapsibleButton = ctk.ctkCollapsibleButton()
roiDefintitionCollapsibleButton.text = "ROI definition"
self.layout.addWidget(roiDefintitionCollapsibleButton)
roiDefintitionFormLayout = qt.QFormLayout(
roiDefintitionCollapsibleButton)
roiManager = ROIManager(dm)
# Mark Prostate Button
self.markProstateButton = qt.QPushButton("Mark Prostate")
self.markProstateButton.toolTip = "Mark the boundaries of the prostate."
self.markProstateButton.name = "MarkProstate"
roiDefintitionFormLayout.addWidget(self.markProstateButton)
self.markProstateButton.connect('clicked()', roiManager.markProstate)
# Mark Urethra Button
self.markUrethraButton = qt.QPushButton("Mark Urethra")
self.markUrethraButton.toolTip = "Mark the boundaries of the urethra."
self.markUrethraButton.name = "MarkUrethra"
roiDefintitionFormLayout.addWidget(self.markUrethraButton)
self.markUrethraButton.connect('clicked()', roiManager.markUrethra)
#
# PET/MR alignment
#
petMRIAlignmentCollapsibleButton = ctk.ctkCollapsibleButton()
petMRIAlignmentCollapsibleButton.text = "PET/MR alignment"
self.layout.addWidget(petMRIAlignmentCollapsibleButton)
petMRAlignmentFormLayout = qt.QFormLayout(
petMRIAlignmentCollapsibleButton)
#
# Landmarking on histology and PET/MR
#
landmarksCollapsibleButton = ctk.ctkCollapsibleButton()
landmarksCollapsibleButton.text = "Set Landmarks"
self.layout.addWidget(landmarksCollapsibleButton)
landmarksFormLayout = qt.QFormLayout(landmarksCollapsibleButton)
landmarkManager = LandmarkManager(dm)
# Set MRI Landmarks Button
self.switchToLandmarksLayoutButton = qt.QPushButton(
"Switch to Landmarks Layout")
self.switchToLandmarksLayoutButton.toolTip = "Switch to Landmarks Layout"
self.switchToLandmarksLayoutButton.name = "SwitchToLandmarksLayout"
landmarksFormLayout.addWidget(self.switchToLandmarksLayoutButton)
self.switchToLandmarksLayoutButton.connect('clicked()',
landmarkManager.setLayout)
self.setMRILandmarksButton = qt.QPushButton("Set MRI Landmarks")
self.setMRILandmarksButton.toolTip = "Set MRI Landmarks"
self.setMRILandmarksButton.name = "SetMRILandmarks"
landmarksFormLayout.addWidget(self.setMRILandmarksButton)
self.setMRILandmarksButton.connect('clicked()',
landmarkManager.setLandmarksForMRI)
self.finishedMRIButton = qt.QPushButton("Finished MRI")
self.finishedMRIButton.toolTip = "Finished MRI Landmarks"
self.finishedMRIButton.name = "FinishedMRILandmarks"
landmarksFormLayout.addWidget(self.finishedMRIButton)
self.finishedMRIButton.connect('clicked()',
landmarkManager.setMouseModeBack)
# Set Histology Landmarks Button
self.setHistoLandmarksButton = qt.QPushButton(
"Set Histology Landmarks")
self.setHistoLandmarksButton.toolTip = "Set Histology Landmarks"
self.setHistoLandmarksButton.name = "SetHistoLandmarks"
landmarksFormLayout.addWidget(self.setHistoLandmarksButton)
self.setHistoLandmarksButton.connect(
'clicked()', landmarkManager.setLandmarksForHisto)
self.finishedHistoButton = qt.QPushButton("Finished Histo")
self.finishedHistoButton.toolTip = "Finished MRI Landmarks"
self.finishedHistoButton.name = "FinishedMRILandmarks"
landmarksFormLayout.addWidget(self.finishedHistoButton)
self.finishedHistoButton.connect('clicked()',
landmarkManager.setMouseModeBack)
#
# Registration Optimization
#
registrationCollapsibleButton = ctk.ctkCollapsibleButton()
registrationCollapsibleButton.text = "Optimize Registration"
self.layout.addWidget(registrationCollapsibleButton)
registrationFormLayout = qt.QFormLayout(registrationCollapsibleButton)