#FILE_Cy5_BS_RE_bit = FILE_Cy5_BS+'_RE_bit'
a060_RunSegmentation.main( FILE_GFP_BS_CV_RE_bit, FARSIGHT_BIN_EXE, optionsSegm, runSegm_log )
shutil.rmtree(LOCAL_DATASET_PATH_SEGM_TEMP)
elapsed_1 = (time.clock() - start_1)
print "\t\tTime_1: "+str(elapsed_1)
if runSegm_db == 1:
start_2 = time.clock()
runSegm_db_log = LOCAL_DATASET_PATH_LOG +'/runSegm_db.log'
TEMP_FILE = open(runSegm_db_log, 'w')
TEMP_FILE.write('SegmentLog\n')
TEMP_FILE.close()
a021_Project.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_SEGM_DEBUG, FILE_GFP_BS_CV_RE_bit+'_soma', runSegm_db_log, 'ORG_RES_BIN' )
a021_Project.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_SEGM_DEBUG, FILE_GFP_BS_CV_RE_bit+'_label', runSegm_db_log, 'ORG_RES_BIN' )
a023_ProjectRGB.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_SEGM_DEBUG, FILE_GFP_BS_CV_RE_bit, FILE_GFP_BS_CV_RE_bit+'_soma', '_GFP_SOMA_', runSegm_db_log )
a023_ProjectRGB.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_SEGM_DEBUG, FILE_DAP_BS_RE_bit, FILE_GFP_BS_CV_RE_bit+'_label', '_DAPI_LABEL_', runSegm_db_log )
elapsed_2 = (time.clock() - start_2)
print "\t\tTime_2: "+str(elapsed_2)
print "# ---------------------------------------------------------------------------------------------------------------------------------------"
print "# Run Tracing: "+DATA_FOLDER
print "# ---------------------------------------------------------------------------------------------------------------------------------------"
print "# ---------------------------------------------------------------------------------------------------------------------------------------"
print "# Move Files: "+DATA_FOLDER
print "# ---------------------------------------------------------------------------------------------------------------------------------------"
runSegm_db_log = LOCAL_DATASET_PATH_LOG + '/runSegm_db.log'
TEMP_FILE = open(runSegm_db_log, 'w')
TEMP_FILE.write('SegmentLog\n')
TEMP_FILE.close()
a021_Project.main(LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE,
LOCAL_DATASET_PATH_SEGM_DEBUG,
FILE_GFP_BS_CV_RE_bit + '_soma', runSegm_db_log,
'ORG_RES_BIN')
a021_Project.main(LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE,
LOCAL_DATASET_PATH_SEGM_DEBUG,
FILE_GFP_BS_CV_RE_bit + '_label', runSegm_db_log,
'ORG_RES_BIN')
a023_ProjectRGB.main(LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE,
LOCAL_DATASET_PATH_SEGM_DEBUG,
FILE_GFP_BS_CV_RE_bit,
FILE_GFP_BS_CV_RE_bit + '_soma', '_GFP_SOMA_',
runSegm_db_log)
a023_ProjectRGB.main(LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE,
LOCAL_DATASET_PATH_SEGM_DEBUG, FILE_DAP_BS_RE_bit,
FILE_GFP_BS_CV_RE_bit + '_label', '_DAPI_LABEL_',
runSegm_db_log)
elapsed_2 = (time.clock() - start_2)
print "\t\tTime_2: " + str(elapsed_2)
print "# ---------------------------------------------------------------------------------------------------------------------------------------"
print "# Run Tracing: " + DATA_FOLDER
print "# ---------------------------------------------------------------------------------------------------------------------------------------"
print "# ---------------------------------------------------------------------------------------------------------------------------------------"
print "# Move Files: " + DATA_FOLDER
"TIFF",
)
a021_Project.main(
LOCAL_DATASET_PATH_LOG,
FARSIGHT_BIN_EXE,
LOCAL_DATASET_PATH_SEGM_DEBUG,
FILE_GFP_BS_CV_RE_bit + "_label",
runSegm_db_log,
"ORG_RES_BIN_HISTO",
"TIFF",
)
a023_ProjectRGB.main(
LOCAL_DATASET_PATH_LOG,
FARSIGHT_BIN_EXE,
LOCAL_DATASET_PATH_SEGM_DEBUG,
FILE_GFP_BS_CV_RE_bit,
FILE_GFP_BS_CV_RE_bit + "_soma",
"_GFP_SOMA_",
runSegm_db_log,
)
a023_ProjectRGB.main(
LOCAL_DATASET_PATH_LOG,
FARSIGHT_BIN_EXE,
LOCAL_DATASET_PATH_SEGM_DEBUG,
FILE_DAP_BS_RE_bit,
FILE_GFP_BS_CV_RE_bit + "_label",
"_DAPI_LABEL_",
runSegm_db_log,
)
a023_ProjectRGB.main(
LOCAL_DATASET_PATH_LOG,
