def test_session_relationship(self):
s = database.Session('test session name')
e = database.Experiment('test expt name', session=s)
self.db_session.add(e)
self.db_session.commit()
e2 = self.db_session.query(database.Experiment).first()
self.assertEqual(e, e2)
self.assertEqual(s, e2.session)
self.assertTrue(e2.session.id >= 1)
def static_experiments(experiment_definitions, session_parameters):
results = []
log.info('Loading %s experiment definitions.' %
len(experiment_definitions))
for name, expt in experiment_definitions.iteritems():
log.debug("Loading experiment: '%s'" % name)
e = database.Experiment()
e.name = name
e.parameters = expt.get('parameters', {})
log.debug('Found %s parameters.' % len(e.parameters))
total_parameters = dict(e.parameters)
total_parameters.update(session_parameters)
sim = expt.get('simulation', {})
e.filaments = make_binds(sim.get('filaments', {}),
database.FilamentBind)
log.debug('Found %s filament bindings.' % len(e.filaments))
e.end_conditions = make_binds(sim.get('end_conditions', {}),
database.EndConditionBind)
log.debug('Found %s end_condition bindings.' % len(e.end_conditions))
e.measurements = make_binds(sim.get('measurements', {}),
database.MeasurementBind)
log.debug('Found %s measurement bindings.' % len(e.measurements))
e.transitions = make_binds(sim.get('transitions', {}),
database.TransitionBind)
log.debug('Found %s transition bindings.' % len(e.transitions))
e.concentrations = make_binds(sim.get('concentrations', {}),
database.ConcentrationBind)
log.debug('Found %s concentration bindings.' % len(e.concentrations))
# analysis configuration
e.analysis_list = make_binds(expt.get('analyses', {}),
database.AnalysisBind)
log.debug('Found %s analysis bindings.' % len(e.analysis_list))
# objective configuration
obj_defs = expt.get('objectives', {})
e.objective_list = make_binds(obj_defs.get('executors', {}),
database.ObjectiveBind)
log.debug('Found %s objective bindings.' % len(e.objective_list))
load_data(e.objectives, total_parameters, obj_defs.get('loaders', {}))
results.append(e)
return results
def test_experiment_relationship(self):
e = database.Experiment(name='test expt name')
e.session_id = 0
r = database.Run(experiment=e)
r.model_id = 0
self.db_session.add(r)
self.db_session.commit()
r2 = self.db_session.query(database.Run).first()
self.assertEqual(r, r2)
self.assertEqual(e, r2.experiment)
self.assertTrue(r2.experiment.id >= 1)
def test_parameters(self):
test_data = {'par_name_1': 7.2,
'par_name_2': 61.3}
e = database.Experiment('ses 1')
e.session_id = 0
e.parameters = test_data
self.db_session.add(e)
self.db_session.commit()
del e
e2 = self.db_session.query(database.Experiment).first()
for par_name, value in test_data.iteritems():
self.assertEqual(value, e2.parameters[par_name])
def test_transition_binds(self):
e = database.Experiment('test expt name')
e.session_id = 0
class_name = 'test_class_name'
fixed_arguments = {'fixed a': 'literal 1'}
variable_arguments = {'variable a': 'par name 1'}
cb = database.TransitionBind(class_name=class_name,
fixed_arguments=fixed_arguments,
variable_arguments=variable_arguments)
e.transitions.append(cb)
self.db_session.add(e)
self.db_session.commit()
e2 = self.db_session.query(database.Experiment).first()
self.assertEqual(cb, e2.transitions[0])