def main(config):
seed_all()
os.makedirs('cache', exist_ok=True)
os.makedirs(config.logdir, exist_ok=True)
print("Logging to: %s" % config.logdir)
src_files = sorted(glob('*.py'))
for src_fn in src_files:
dst_fn = os.path.join(config.logdir, src_fn)
copyfile(src_fn, dst_fn)
train_image_fns = sorted(glob(os.path.join(config.train_dir, '*.jpg')))
test_image_fns = sorted(glob(os.path.join(config.test_dir, '*.jpg')))
assert len(train_image_fns) == 3881
assert len(test_image_fns) == 4150
gt, label_to_int = load_gt(config.train_rle)
int_to_label = {v: k for k, v in label_to_int.items()}
# create folds
np.random.shuffle(train_image_fns)
if config.subset > 0:
train_image_fns = train_image_fns[:config.subset]
folds = np.arange(len(train_image_fns)) % config.num_folds
val_image_fns = [
fn for k, fn in enumerate(train_image_fns) if folds[k] == config.fold
]
train_image_fns = [
fn for k, fn in enumerate(train_image_fns) if folds[k] != config.fold
]
if config.add_val:
print("Training on validation set")
train_image_fns = train_image_fns + val_image_fns[:]
print(len(val_image_fns), len(train_image_fns))
# TODO: drop empty images <- is this helpful?
train_image_fns = [
fn for fn in train_image_fns if KuzushijiDataset.fn_to_id(fn) in gt
]
val_image_fns = [
fn for fn in val_image_fns if KuzushijiDataset.fn_to_id(fn) in gt
]
print("VAL: ", len(val_image_fns), val_image_fns[123])
print("TRAIN: ", len(train_image_fns), train_image_fns[456])
train_ds = KuzushijiDataset(train_image_fns,
gt_boxes=gt,
label_to_int=label_to_int,
augment=True)
val_ds = KuzushijiDataset(val_image_fns,
gt_boxes=gt,
label_to_int=label_to_int)
if config.cache:
train_ds.cache()
val_ds.cache()
val_loader = data.DataLoader(val_ds,
batch_size=config.batch_size // 8,
shuffle=False,
num_workers=config.num_workers,
pin_memory=config.pin,
drop_last=False)
model = FPNSegmentation(config.slug)
if config.weight is not None:
print("Loading: %s" % config.weight)
model.load_state_dict(th.load(config.weight))
model = model.to(config.device)
no_decay = ['mean', 'std', 'bias'] + ['.bn%d.' % i for i in range(100)]
grouped_parameters = [{
'params': [],
'weight_decay': config.weight_decay
}, {
'params': [],
'weight_decay': 0.0
}]
for n, p in model.named_parameters():
if not any(nd in n for nd in no_decay):
# print("Decay: %s" % n)
grouped_parameters[0]['params'].append(p)
else:
# print("No Decay: %s" % n)
grouped_parameters[1]['params'].append(p)
optimizer = AdamW(grouped_parameters, lr=config.lr)
if config.apex:
model, optimizer = apex.amp.initialize(model,
optimizer,
opt_level="O1",
verbosity=0)
updates_per_epoch = len(train_ds) // config.batch_size
num_updates = int(config.epochs * updates_per_epoch)
scheduler = WarmupLinearSchedule(warmup=config.warmup, t_total=num_updates)
# training loop
smooth = 0.1
best_acc = 0.0
best_fn = None
global_step = 0
for epoch in range(1, config.epochs + 1):
smooth_loss = None
smooth_accuracy = None
model.train()
train_loader = data.DataLoader(train_ds,
batch_size=config.batch_size,
shuffle=True,
num_workers=config.num_workers,
pin_memory=config.pin,
drop_last=True)
progress = tqdm(total=len(train_ds), smoothing=0.01)
if True:
for i, (X, fns, hm, centers, classes) in enumerate(train_loader):
X = X.to(config.device).float()
hm = hm.to(config.device)
centers = centers.to(config.device)
classes = classes.to(config.device)
hm_pred, classes_pred = model(X, centers=centers)
loss = kuzushiji_loss(hm, centers, classes, hm_pred,
classes_pred)
if config.apex:
with apex.amp.scale_loss(loss, optimizer) as scaled_loss:
scaled_loss.backward()
else:
loss.backward()
lr_this_step = None
if (i + 1) % config.accumulation_step == 0:
optimizer.step()
optimizer.zero_grad()
lr_this_step = config.lr * scheduler.get_lr(
global_step, config.warmup)
for param_group in optimizer.param_groups:
param_group['lr'] = lr_this_step
global_step += 1
smooth_loss = loss.item() if smooth_loss is None else \
smooth * loss.item() + (1. - smooth) * smooth_loss
# print((y_true >= 0.5).sum().item())
accuracy = th.mean(
((th.sigmoid(hm_pred) >= 0.5) == (hm == 1)).to(
th.float)).item()
smooth_accuracy = accuracy if smooth_accuracy is None else \
smooth * accuracy + (1. - smooth) * smooth_accuracy
progress.set_postfix(
ep='%d/%d' % (epoch, config.epochs),
loss='%.4f' % smooth_loss,
accuracy='%.4f' % (smooth_accuracy),
lr='%.6f' %
(config.lr if lr_this_step is None else lr_this_step))
progress.update(len(X))
# skip validation
if epoch not in [10, 20, 30, 40, 50]:
if 1 < epoch <= 65:
continue
# validation loop
model.eval()
progress = tqdm(enumerate(val_loader), total=len(val_loader))
hm_correct, classes_correct = 0, 0
num_hm, num_classes = 0, 0
with th.no_grad():
for i, (X, fns, hm, centers, classes) in progress:
X = X.to(config.device).float()
hm = hm.cuda()
centers = centers.cuda()
classes = classes.cuda()
hm_pred, classes_pred = model(X)
hm_pred = th.sigmoid(hm_pred)
classes_pred = th.nn.functional.softmax(classes_pred, 1)
hm_cuda = hm.cuda()
# PyTorch 1.2 has `bool`
if hasattr(hm_cuda, 'bool'):
hm_cuda = hm_cuda.bool()
hm_correct += (hm_cuda == (hm_pred >=
0.5)).float().sum().item()
num_hm += np.prod(hm.shape)
num_samples = len(X)
for sample_ind in range(num_samples):
center_mask = centers[sample_ind, :, 0] != -1
per_image_letters = center_mask.sum().item()
if per_image_letters == 0:
continue
num_classes += per_image_letters
centers_per_img = centers[sample_ind][center_mask]
classes_per_img = classes[sample_ind][center_mask]
classes_per_img_pred = classes_pred[
sample_ind][:, centers_per_img[:, 1],
centers_per_img[:, 0]].argmax(0)
classes_correct += (
classes_per_img_pred == classes_per_img).sum().item()
num_classes += per_image_letters
val_hm_acc = hm_correct / num_hm
val_classes_acc = classes_correct / num_classes
summary_str = 'f%02d-ep-%04d-val_hm_acc-%.4f-val_classes_acc-%.4f' % (
config.fold, epoch, val_hm_acc, val_classes_acc)
progress.write(summary_str)
if val_classes_acc >= best_acc:
weight_fn = os.path.join(config.logdir, summary_str + '.pth')
progress.write("New best: %s" % weight_fn)
th.save(model.state_dict(), weight_fn)
best_acc = val_classes_acc
best_fn = weight_fn
fns = sorted(
glob(os.path.join(config.logdir, 'f%02d-*.pth' % config.fold)))
for fn in fns[:-config.n_keep]:
os.remove(fn)
# create submission
test_ds = KuzushijiDataset(test_image_fns)
test_loader = data.DataLoader(test_ds,
batch_size=config.batch_size // 8,
shuffle=False,
num_workers=config.num_workers,
pin_memory=False,
drop_last=False)
if best_fn is not None:
model.load_state_dict(th.load(best_fn))
model.eval()
sub = create_submission(model,
test_loader,
int_to_label,
config,
pred_zip=config.pred_zip)
sub.to_csv(config.submission_fn, index=False)
print("Wrote to: %s" % config.submission_fn)
# create val submission
val_fn = config.submission_fn.replace('.csv', '_VAL.csv')
model.eval()
sub = []
sub = create_submission(model,
val_loader,
int_to_label,
config,
pred_zip=config.pred_zip.replace(
'.zip', '_VAL.zip'))
sub.to_csv(val_fn, index=False)
print("Wrote to: %s" % val_fn)
def main(config):
seed_all()
os.makedirs('cache', exist_ok=True)
os.makedirs(config.logdir, exist_ok=True)
print("Logging to: %s" % config.logdir)
src_files = sorted(glob('*.py'))
for src_fn in src_files:
dst_fn = os.path.join(config.logdir, src_fn)
copyfile(src_fn, dst_fn)
train_image_fns = sorted(glob(os.path.join(config.train_dir, '*/*/*.dcm')))
test_image_fns = sorted(glob(os.path.join(config.test_dir, '*/*/*.dcm')))
# assert len(train_image_fns) == 10712
# assert len(test_image_fns) == 1377
gt = load_gt(config.train_rle)
# create folds
np.random.shuffle(train_image_fns)
if config.subset > 0:
train_image_fns = train_image_fns[:config.subset]
folds = np.arange(len(train_image_fns)) % config.num_folds
val_image_fns = [fn for k, fn in enumerate(train_image_fns)
if folds[k] == config.fold]
train_image_fns = [fn for k, fn in enumerate(train_image_fns)
if folds[k] != config.fold]
# remove not-used files:
# https://www.kaggle.com/c/siim-acr-pneumothorax-segmentation/discussion/98478#latest-572385 # noqa
train_image_fns = [fn for fn in train_image_fns
if DicomDataset.fn_to_id(fn) in gt]
val_image_fns = [fn for fn in val_image_fns
if DicomDataset.fn_to_id(fn) in gt]
print("VAL: ", len(val_image_fns), os.path.basename(val_image_fns[0]))
print("TRAIN: ", len(train_image_fns), os.path.basename(train_image_fns[0]))
train_ds = DicomDataset(train_image_fns, gt_rles=gt, augment=True)
val_ds = DicomDataset(val_image_fns, gt_rles=gt)
if config.cache:
train_ds.cache()
val_ds.cache()
val_loader = data.DataLoader(val_ds, batch_size=config.batch_size,
shuffle=False, num_workers=config.num_workers,
pin_memory=config.pin, drop_last=False)
model = FPNSegmentation(config.slug, ema=config.ema)
if config.weight is not None:
print("Loading: %s" % config.weight)
model.load_state_dict(th.load(config.weight))
model = model.to(config.device)
no_decay = ['mean', 'std', 'bias'] + ['.bn%d.' % i for i in range(100)]
grouped_parameters = [{'params': [], 'weight_decay': config.weight_decay},
{'params': [], 'weight_decay': 0.0}]
for n, p in model.named_parameters():
if not any(nd in n for nd in no_decay):
print("Decay: %s" % n)
grouped_parameters[0]['params'].append(p)
else:
print("No Decay: %s" % n)
grouped_parameters[1]['params'].append(p)
optimizer = AdamW(grouped_parameters, lr=config.lr)
if config.apex:
model, optimizer = apex.amp.initialize(model, optimizer, opt_level="O1",
verbosity=0)
updates_per_epoch = len(train_ds) // config.batch_size
num_updates = int(config.epochs * updates_per_epoch)
scheduler = WarmupLinearSchedule(warmup=config.warmup, t_total=num_updates)
# training loop
smooth = 0.1
best_dice = 0.0
best_fn = None
global_step = 0
for epoch in range(1, config.epochs + 1):
smooth_loss = None
smooth_accuracy = None
model.train()
train_loader = data.DataLoader(train_ds, batch_size=config.batch_size,
shuffle=True, num_workers=config.num_workers,
pin_memory=config.pin, drop_last=True)
progress = tqdm(total=len(train_ds), smoothing=0.01)
for i, (X, _, y_true) in enumerate(train_loader):
X = X.to(config.device).float()
y_true = y_true.to(config.device)
y_pred = model(X)
loss = siim_loss(y_true, y_pred, weights=None)
if config.apex:
with apex.amp.scale_loss(loss, optimizer) as scaled_loss:
scaled_loss.backward()
else:
loss.backward()
lr_this_step = None
if (i + 1) % config.accumulation_step == 0:
optimizer.step()
optimizer.zero_grad()
lr_this_step = config.lr * scheduler.get_lr(global_step, config.warmup)
for param_group in optimizer.param_groups:
param_group['lr'] = lr_this_step
global_step += 1
smooth_loss = loss.item() if smooth_loss is None else \
smooth * loss.item() + (1. - smooth) * smooth_loss
# print((y_true >= 0.5).sum().item())
accuracy = th.mean(((y_pred >= 0.5) == (y_true == 1)).to(
th.float)).item()
smooth_accuracy = accuracy if smooth_accuracy is None else \
smooth * accuracy + (1. - smooth) * smooth_accuracy
progress.set_postfix(ep='%d/%d' % (epoch, config.epochs),
loss='%.4f' % smooth_loss, accuracy='%.4f' %
(smooth_accuracy), lr='%.6f' % (config.lr if lr_this_step is None
else lr_this_step))
progress.update(len(X))
if epoch <= 12:
continue
# validation loop
model.eval()
thresholds = [0.1, 0.2]
dice_coeffs = [[] for _ in range(len(thresholds))]
progress = tqdm(enumerate(val_loader), total=len(val_loader))
with th.no_grad():
for i, (X, _, y_trues) in progress:
X = X.to(config.device).float()
y_trues = y_trues.to(config.device)
y_preds = model(X)
y_preds_flip = th.flip(model(th.flip(X, (-1, ))), (-1, ))
y_preds = 0.5 * (y_preds + y_preds_flip)
y_trues = y_trues.cpu().numpy()
y_preds = y_preds.cpu().numpy()
for yt, yp in zip(y_trues, y_preds):
yt = (yt.squeeze() >= 0.5).astype('uint8')
yp = yp.squeeze()
for dind, threshold in enumerate(thresholds):
yp_ = (yp >= threshold).astype(np.uint8)
sc = score(yt, yp_)
dice_coeffs[dind].append(sc)
best_threshold_ind = -1
dice_coeff = -1
for dind, threshold in enumerate(thresholds):
dc = np.mean([x[0] for x in dice_coeffs[dind] if x[1] == 'non-empty'])
# progress.write("Dice @%.2f: %.4f" % (threshold, dc))
if dc > dice_coeff:
dice_coeff = dc
best_threshold_ind = dind
dice_coeffs = dice_coeffs[best_threshold_ind]
num_empty = sum(1 for x in dice_coeffs if x[1] == 'empty')
num_total = len(dice_coeffs)
num_non_empty = num_total - num_empty
empty_sum = np.sum([d[0] for d in dice_coeffs if d[1] == 'empty'])
non_empty_sum = np.sum([d[0] for d in dice_coeffs if d[1] == 'non-empty'])
dice_coeff_empty = empty_sum / num_empty
dice_coeff_non_empty = non_empty_sum / num_non_empty
progress.write('[Empty: %d]: %.3f | %.3f, [Non-Empty: %d]: %.3f | %.3f' % (
num_empty, dice_coeff_empty, empty_sum / num_total,
num_non_empty, dice_coeff_non_empty, non_empty_sum / num_total))
dice_coeff = float(dice_coeff)
summary_str = 'f%02d-ep-%04d-val_dice-%.4f@%.2f' % (config.fold, epoch,
dice_coeff, thresholds[best_threshold_ind])
progress.write(summary_str)
if dice_coeff > best_dice:
weight_fn = os.path.join(config.logdir, summary_str + '.pth')
th.save(model.state_dict(), weight_fn)
best_dice = dice_coeff
best_fn = weight_fn
fns = sorted(glob(os.path.join(config.logdir, 'f%02d-*.pth' %
config.fold)))
for fn in fns[:-config.n_keep]:
os.remove(fn)
# create submission
test_ds = DicomDataset(test_image_fns)
test_loader = data.DataLoader(test_ds, batch_size=config.batch_size,
shuffle=False, num_workers=0,
pin_memory=False, drop_last=False)
if best_fn is not None:
model.load_state_dict(th.load(best_fn))
model.eval()
sub = create_submission(model, test_loader, config, pred_zip=config.pred_zip)
sub.to_csv(config.submission_fn, index=False)
print("Wrote to: %s" % config.submission_fn)
# create val submission
val_fn = config.submission_fn.replace('.csv', '_VAL.csv')
model.eval()
sub = []
sub = create_submission(model, val_loader, config,
pred_zip=config.pred_zip.replace('.zip', '_VAL.zip'))
sub.to_csv(val_fn, index=False)
print("Wrote to: %s" % val_fn)
def objective(SCI_RELU, SCI_BIAS, SCI_loss_type, SCI_optimizer, SCI_BATCH_SIZE, SCI_MM, SCI_REGULARIZATION, SCI_LR, SCI_DROPOUT, SCI_L_SECOND, SCI_EPOCHS, SCI_BN_MOMENTUM, SCI_SGD_MOMENTUM, SCI_LINEARITY):
global device, MaxCredit
global count, CreditVector, CreditVec
SCI_BATCH_SIZE = int(SCI_BATCH_SIZE) # integer between 4 and 256
SCI_MM = round(SCI_MM, 3) # real with three decimals between (0.001, 0.999)
SCI_REGULARIZATION = round(SCI_REGULARIZATION, 3) # real with three decimals between (0.001, 0.7)
SCI_LR = round(SCI_LR, 5) # real with five decimals between(1e-4, 7e-1)
SCI_DROPOUT = round(SCI_DROPOUT, 2) # real with two decimals between (0, 0.4)
SCI_L_SECOND = int(SCI_L_SECOND) # integer between 2 and 64
SCI_EPOCHS = int(SCI_EPOCHS) # integer between (100, 500)
SCI_BN_MOMENTUM = round(SCI_BN_MOMENTUM, 2) # real with two decimals between (0, 0.99)
SCI_SGD_MOMENTUM = round(SCI_SGD_MOMENTUM, 2) # real with two decimals between (0, 0.99)
SCI_optimizer = int(SCI_optimizer) # integer between 1 and 4
SCI_loss_type = int(SCI_loss_type) # integer between 1 and 3 ('CrossEntropyLoss', 'MultiMarginLoss','NLLLoss')
SCI_LINEARITY = int(SCI_LINEARITY)
if int(SCI_RELU) == 1 : # integer between 1 and 2 ('True', 'False')
SCI_RELU = True
else:
SCI_RELU = False
if int(SCI_BIAS) == 1 : # integer between 1 and 2 ('True', 'False')
SCI_BIAS = True
else:
SCI_BIAS = False
from cnn_model import CNN6
cnn = CNN6(L_FIRST, SCI_L_SECOND, KERNEL_X, SCI_BIAS, SCI_BN_MOMENTUM, SCI_RELU, SCI_DROPOUT, dataset.CLASSES, SCI_LINEARITY)
if GPU_SELECT == 2:
if torch.cuda.device_count() > 1:
cnn = nn.DataParallel(cnn, device_ids=[0, 1], dim=0)
cnn = cnn.cuda()
if GPU_SELECT == 1:
cnn.to(device)
if GPU_SELECT == 0:
cnn.to(device)
# next(cnn.parameters()).is_cuda
# print(cnn) # net architecture
# list(cnn.parameters())
cnn.apply(CNN6.weights_reset)
cnn.share_memory()
loss_func = nn.CrossEntropyLoss()
def create_loss(LOSS):
if LOSS == 1:
loss_func = nn.CrossEntropyLoss()
if LOSS == 2:
loss_func = nn.NLLLoss()
else:
loss_func = nn.MultiMarginLoss()
return loss_func
MM = float(str(SCI_MM))
REGULARIZATION = float(str(SCI_REGULARIZATION))
# optimizer = str(SCI_optimizer)
LR = float(str(SCI_LR))
train_losses = [] # to track the training loss as the model trains
output = 0
loss = 0
accuracy = 0
early_stopping.counter = 0
early_stopping.best_score = None
early_stopping.early_stop = False
early_stopping.verbose = False
TEST_RESULTS = torch.zeros(1, 2)
loss_type = create_loss(SCI_loss_type)
from adamw import AdamW
if SCI_optimizer == 1:
optimizer = optim.Adam(cnn.parameters(), lr=LR, betas=(0.9, 0.99), weight_decay=REGULARIZATION)
if SCI_optimizer == 2:
optimizer = optim.Adam(cnn.parameters(), lr=LR, betas=(0.9, 0.99), weight_decay=REGULARIZATION, amsgrad=True)
if SCI_optimizer == 3:
optimizer = AdamW(cnn.parameters(), lr=LR, betas=(0.9, 0.99), weight_decay=REGULARIZATION)
if SCI_optimizer == 4:
optimizer = optim.SGD(cnn.parameters(), lr=LR, momentum=SCI_SGD_MOMENTUM, weight_decay=REGULARIZATION)
if SCI_optimizer == 5:
optimizer = optim.Adadelta(cnn.parameters(), lr=LR, weight_decay=REGULARIZATION)
if SCI_optimizer == 6:
optimizer = optim.Adagrad(cnn.parameters(), lr=LR, weight_decay=REGULARIZATION)
from Utillities import Utillities
Utillities.listing(optimizer, SCI_SGD_MOMENTUM, SCI_BN_MOMENTUM, SCI_L_SECOND, SCI_LR, SCI_RELU, SCI_BIAS, SCI_loss_type, REGULARIZATION, SCI_BATCH_SIZE, SCI_DROPOUT, SCI_LINEARITY)
# Data Loader for easy mini-batch return in training
SCI_BATCH_SIZE = int(SCI_BATCH_SIZE)
train_loader = Data.DataLoader(dataset=dataset.train_dataset, batch_size=SCI_BATCH_SIZE, shuffle=True, num_workers=0, drop_last=True, pin_memory=True)
validation_loader = Data.DataLoader(dataset=dataset.validation_dataset, batch_size=144, shuffle=True, num_workers=0, drop_last=True, pin_memory=True)
test_loader = Data.DataLoader(dataset=dataset.test_dataset, batch_size=599, shuffle=True, num_workers=0, drop_last=True, pin_memory=True)
for epoch in range(SCI_EPOCHS):
loss = None
cnn.train().cuda()
for step, (train_data, train_target) in enumerate(train_loader):
train_data, train_target = train_data.to(device), train_target.to(device)
output, temp = cnn(train_data) # forward pass: compute predicted outputs by passing inputs to the model
loss = loss_func(output, train_target)
train_losses.append(loss.item()) # record training loss
loss.backward() # backward pass: compute gradient of the loss with respect to model parameters
optimizer.zero_grad()
optimizer.step() # perform a single optimization step (parameter update)
cnn.eval().cuda() # switch to evaluation (no change) mode
valid_loss = 0
accuracy = 0
running_loss = 0.0
with torch.no_grad():
for step, (validation_data, validation_target) in enumerate(validation_loader):
validation_data, validation_target = validation_data.to(device), validation_target.to(device)
output, temp = cnn(validation_data) # forward pass: compute predicted outputs by passing inputs to the model
valid_loss += loss_func(output, validation_target).item()
# ps = torch.exp(output)
# equality = (validation_target[0].data == ps.max(dim=1)[1])
# accuracy += equality.type(torch.FloatTensor).mean()
# print('valid_loss: ', valid_loss)
# print statistics
running_loss += valid_loss
if epoch % 100 == 0:
print('average loss: %.6f' % (running_loss))
running_loss = 0.0
train_losses = []
early_stopping(valid_loss, cnn)
if early_stopping.early_stop:
if os.path.exists('checkpoint.pt'):
# cnn = TheModelClass(*args, **kwargs)
print("Loaded the model with the lowest Validation Loss!")
cnn.load_state_dict(torch.load('checkpoint.pt')) # Choose whatever GPU device number you want
cnn.to(device)
break
cnn.eval()
class_correct = list(0. for i in range(1000))
class_total = list(0. for i in range(1000))
with torch.no_grad():
for (test_data, test_target) in test_loader:
test_data, test_target = test_data.to(device), test_target.to(device)
outputs, temp = cnn(test_data)
_, predicted = torch.max(outputs, 1)
c = (predicted == test_target).squeeze()
for i in range(test_target.size(0)):
label = test_target[i]
class_correct[label] += c[i].item()
class_total[label] += 1
for i in range(dataset.CLASSES):
TEST_RESULTS[0, i] = class_correct[i] / dataset.TESTED_ELEMENTS[i]
print('Class: ', i, ' accuracy: ', TEST_RESULTS[0, i])
print('Class: ', i, ' correct: ', class_correct[i], ' of ', dataset.TESTED_ELEMENTS[i])
percent = (TEST_RESULTS[0, 0] + TEST_RESULTS[0, 1]) / 2
print('Final percentage: ', percent)
CreditCost = int((1 - TEST_RESULTS[0, 0]) * dataset.TESTED_ELEMENTS[0] + (1 - TEST_RESULTS[0, 1]) * dataset.TESTED_ELEMENTS[1] * 5)
if TEST_RESULTS[0, 0] == 0 or TEST_RESULTS[0, 1] == 0 :
CreditCost = CreditCost + 300
print('Last epoch: ', epoch)
print('Credit Cost: ', -CreditCost)
# list(cnn.parameters())
if os.path.exists('checkpoint.pt'):
os.remove('checkpoint.pt')
print()
print()
if -CreditCost > MaxCredit :
MaxCredit = -CreditCost
print('Best Score So Far: ', MaxCredit)
CreditVector[count] = MaxCredit
CreditVec[count] = count
# plot the data
fig = plt.figure()
ax = fig.add_subplot(1, 1, 1)
ax.plot(CreditVec, -CreditVector, color='tab:blue')
# print(CreditVec, -CreditVector)
count = count + 1
# display the plot
plt.show()
return -CreditCost
def objective(SCI_SGD_MOMENTUM, SCI_DROPOUT, SCI_BATCH_SIZE, SCI_L_SECOND, SCI_optimizer, LINEARITY):
global SCI_REGULARIZATION, SCI_EPOCHS, SCI_loss_type, SCI_RELU
global SCI_BIAS, SCI_BN_MOMENTUM, device, SCI_LR, MaxCredit, count, CreditVector, CreditVec
SCI_SGD_MOMENTUM = SCI_SGD_MOMENTUM / 10
DROPOUT = (SCI_DROPOUT / 2).item()
if SCI_DROPOUT < 0 :
DROPOUT = 0
BATCH_SIZE = int(SCI_BATCH_SIZE)
if SCI_L_SECOND < 4 :
SCI_L_SECOND = 4
if SCI_optimizer < 1 :
SCI_optimizer = 1
L_SECOND = int(SCI_L_SECOND)
loss_func = nn.CrossEntropyLoss()
def create_loss(LOSS):
if LOSS == 'CrossEntropyLoss':
loss_func = nn.CrossEntropyLoss()
if LOSS == 'NLLLoss':
loss_func = nn.NLLLoss()
else:
loss_func = nn.MultiMarginLoss()
return loss_func
REGULARIZATION = float(str(SCI_REGULARIZATION))
optimizer1 = str(SCI_optimizer)
from cnn_model import CNN6
cnn = CNN6(L_FIRST, L_SECOND, KERNEL_X, SCI_BIAS, SCI_BN_MOMENTUM, SCI_RELU, DROPOUT, dataset.CLASSES, LINEARITY)
if GPU_SELECT == 2:
if torch.cuda.device_count() > 1:
cnn = nn.DataParallel(cnn, device_ids=[0, 1], dim=0)
cnn = cnn.cuda()
if GPU_SELECT == 1:
cnn.to(device)
if GPU_SELECT == 0:
cnn.to(device)
cnn.apply(CNN6.weights_reset)
cnn.share_memory()
train_losses = [] # to track the training loss as the model trains
output = 0
loss = 0
accuracy = 0
early_stopping.counter = 0
early_stopping.best_score = None
early_stopping.early_stop = False
early_stopping.verbose = False
TEST_RESULTS = torch.zeros(1, 2)
loss_type = create_loss(SCI_loss_type)
from adamw import AdamW
if optimizer1 == '1':
optimizer = optim.Adam(cnn.parameters(), lr=SCI_LR, betas=(0.9, 0.99), weight_decay=REGULARIZATION)
if optimizer1 == '2':
optimizer = optim.Adam(cnn.parameters(), lr=SCI_LR, betas=(0.9, 0.99), weight_decay=REGULARIZATION, amsgrad=True)
if optimizer1 == '3':
optimizer = AdamW(cnn.parameters(), lr=SCI_LR, betas=(0.9, 0.99), weight_decay=REGULARIZATION)
if optimizer1 == '4':
optimizer = optim.SGD(cnn.parameters(), lr=SCI_LR, momentum=SCI_SGD_MOMENTUM, weight_decay=REGULARIZATION)
if optimizer1 == '5':
optimizer = optim.Adadelta(cnn.parameters(), lr=SCI_LR, weight_decay=REGULARIZATION)
if optimizer1 == '6':
optimizer = optim.Adagrad(cnn.parameters(), lr=SCI_LR, weight_decay=REGULARIZATION)
if optimizer1 > '6':
optimizer = optim.Adam(cnn.parameters(), lr=SCI_LR, betas=(0.9, 0.99), weight_decay=REGULARIZATION)
from Utillities import Utillities
Utillities.listing(optimizer, SCI_SGD_MOMENTUM, SCI_BN_MOMENTUM, L_SECOND, SCI_LR, SCI_RELU, SCI_BIAS, SCI_loss_type, REGULARIZATION, BATCH_SIZE, DROPOUT, LINEARITY)
train_loader = Data.DataLoader(dataset=dataset.train_dataset, batch_size=BATCH_SIZE, shuffle=False, num_workers=0, drop_last=True, pin_memory=True)
validation_loader = Data.DataLoader(dataset=dataset.validation_dataset, batch_size=144, shuffle=False, num_workers=0, drop_last=True, pin_memory=True)
test_loader = Data.DataLoader(dataset=dataset.test_dataset, batch_size=599, shuffle=False, num_workers=0, pin_memory=True, drop_last=True)
for epoch in range(SCI_EPOCHS):
loss = None
cnn.train().cuda()
for step, (train_data, train_target) in enumerate(train_loader):
train_data, train_target = train_data.to(device), train_target.to(device)
output, temp = cnn(train_data) # forward pass: compute predicted outputs by passing inputs to the model
loss = loss_func(output, train_target)
train_losses.append(loss.item()) # record training loss
loss.backward() # backward pass: compute gradient of the loss with respect to model parameters
optimizer.zero_grad()
optimizer.step() # perform a single optimization step (parameter update)
cnn.eval().cuda() # switch to evaluation (no change) mode
valid_loss = 0
accuracy = 0
with torch.no_grad():
for step, (validation_data, validation_target) in enumerate(validation_loader):
validation_data, validation_target = validation_data.to(device), validation_target.to(device)
output, temp = cnn(validation_data) # forward pass: compute predicted outputs by passing inputs to the model
valid_loss += loss_func(output, validation_target).item()
ps = torch.exp(output)
equality = (validation_target[0].data == ps.max(dim=1)[1])
accuracy += equality.type(torch.FloatTensor).mean()
train_losses = []
early_stopping(valid_loss, cnn)
if early_stopping.early_stop:
if os.path.exists('checkpoint.pt'):
print("Loaded the model with the lowest Validation Loss!")
cnn.load_state_dict(torch.load('checkpoint.pt', map_location="cuda:1")) # Choose whatever GPU device number you want
cnn.to(device)
break
cnn.eval()
class_correct = list(0. for i in range(1000))
class_total = list(0. for i in range(1000))
with torch.no_grad():
for (test_data, test_target) in test_loader:
test_data, test_target = test_data.to(device), test_target.to(device)
outputs, temp = cnn(test_data)
_, predicted = torch.max(outputs, 1)
c = (predicted == test_target).squeeze()
for i in range(test_target.size(0)):
label = test_target[i]
class_correct[label] += c[i].item()
class_total[label] += 1
for i in range(dataset.CLASSES):
TEST_RESULTS[0, i] = class_correct[i] / dataset.TESTED_ELEMENTS[i]
print('Class: ', i, ' accuracy: ', TEST_RESULTS[0, i])
print('Class: ', i, ' correct: ', class_correct[i])
percent = (TEST_RESULTS[0, 0] + TEST_RESULTS[0, 1]) / 2
print('Final percentage: ', percent)
CreditCost = (1 - TEST_RESULTS[0, 0]) * dataset.TESTED_ELEMENTS[0] + (1 - TEST_RESULTS[0, 1]) * dataset.TESTED_ELEMENTS[1] * 5
if TEST_RESULTS[0, 0] == 0 or TEST_RESULTS[0, 1] == 0 :
CreditCost = CreditCost + 300
print('Last epoch: ', epoch)
if os.path.exists('checkpoint.pt'):
os.remove('checkpoint.pt')
print()
torch.cuda.empty_cache()
print()
CreditCost = CreditCost + (SCI_SGD_MOMENTUM + SCI_DROPOUT + SCI_BATCH_SIZE + SCI_L_SECOND + SCI_optimizer) / 1000
print('Credit Cost: ', CreditCost)
if -CreditCost > MaxCredit :
MaxCredit = -CreditCost
print('Best Score So Far: ', MaxCredit)
CreditVector[count] = MaxCredit
CreditVec[count] = count
# plot the data
fig = plt.figure()
ax = fig.add_subplot(1, 1, 1)
ax.plot(CreditVec, -CreditVector, color='tab:orange')
# print(CreditVec, -CreditVector)
count = count + 1
# display the plot
plt.show()
return CreditCost
# Display progress
progress_bar = tqdm(train_loader, desc='| Epoch {:03d}'.format(epoch), leave=False, disable=False)
# Iterate over the training set
for i, sample in enumerate(progress_bar):
if cuda:
sample = move_to_cuda(sample)
if len(sample) == 0:
continue
signals = sample['signals']
#signals = sample['signals'].unsqueeze(-1)
output = model(signals)
loss = cost(output, sample['target'])
optimizer.zero_grad()
loss.backward()
grad_norm = torch.nn.utils.clip_grad_norm_(model.parameters(), clip_norm)
optimizer.step()
# Update statistics for progress bar
total_loss = loss.item()
stats['loss'] += total_loss
stats['grad_norm'] += grad_norm
stats['clip'] += 1 if grad_norm > clip_norm else 0
progress_bar.set_postfix({key: '{:.4g}'.format(value / (i + 1)) for key, value in stats.items()},
refresh=True)
print('Epoch {:03d}: {}'.format(epoch, ' | '.join(key + ' {:.4g}'.format(
value / len(progress_bar)) for key, value in stats.items())))
# Validation