def test_critical(self):
msg = "unit_test_critical_message"
Alogging.critical(msg)
found = False
r = open(self.logfile, 'r')
for line in r.readlines():
if msg in line:
if(self.verbose):
print "\nFound message > ", line
found = True
r.close()
break
self.assertTrue(found)
def fitgauss1Dm(xdat, ydat, usePeak=False, dx=-1.0):
""" gaussfit helper function
this will get a reasonable gauss even if you only have 2 points
assumes evenly spaced data in xdat, so it can extract a width.
It can be used like fitgauss1D(), but uses the first three moments
of the distribution to "match" that of a gauss. area preserving
if you wish.
If you set usePeak, it will pick the highest value in your data.
Warning: if you must fit negative profiles, be sure to rescale
before you come into this routine.
"""
if len(xdat) == 1:
# special case, it will need dx
if dx < 0.0:
logging.critical(
"Cannot determine gaussian of delta function if width not given"
)
raise
return (ydat[0], xdat[0], dx)
sum0 = sum1 = sum2 = peak = 0.0
# the mean is given as the weighted mean of x
for x, y in zip(xdat, ydat):
if y > peak: peak = y
sum0 = sum0 + y
sum1 = sum1 + y * x
xmean = sum1 / sum0
# re-center the data for a moment-2 calculation
# @todo pos/neg
xdat0 = xdat - xmean
for x, y in zip(xdat0, ydat):
sum2 = sum2 + y * x * x
sigma = math.sqrt(abs(sum2 / sum0))
# equate the area under the histogram with the area under a gauss
# to get the peak of the "matched" gauss
dx = abs(xdat[1] - xdat[0]) # @todo use optional "dx=None" ?
if not usePeak:
# pick the area preserving one, vs. the "real" peak
# The area preserving one seems to be about 18% higher
# but with a tight correllation
peak = (sum0 * dx) / math.sqrt(2 * sigma * math.pi)
fwhm = 2.35482 * sigma
return (peak, xmean, fwhm)
def fitgauss1Dm(xdat, ydat, usePeak = False, dx = -1.0):
""" gaussfit helper function
this will get a reasonable gauss even if you only have 2 points
assumes evenly spaced data in xdat, so it can extract a width.
It can be used like fitgauss1D(), but uses the first three moments
of the distribution to "match" that of a gauss. area preserving
if you wish.
If you set usePeak, it will pick the highest value in your data.
Warning: if you must fit negative profiles, be sure to rescale
before you come into this routine.
"""
if len(xdat) == 1:
# special case, it will need dx
if dx < 0.0:
logging.critical("Cannot determine gaussian of delta function if width not given")
raise
return (ydat[0], xdat[0], dx)
sum0 = sum1 = sum2 = peak = 0.0
# the mean is given as the weighted mean of x
for x,y in zip(xdat,ydat):
if y>peak: peak = y
sum0 = sum0 + y
sum1 = sum1 + y*x
xmean = sum1/sum0
# re-center the data for a moment-2 calculation
# @todo pos/neg
xdat0 = xdat - xmean
for x,y in zip(xdat0,ydat):
sum2 = sum2 + y*x*x
sigma = math.sqrt(abs(sum2/sum0))
# equate the area under the histogram with the area under a gauss
# to get the peak of the "matched" gauss
dx = abs(xdat[1]-xdat[0]) # @todo use optional "dx=None" ?
if not usePeak:
# pick the area preserving one, vs. the "real" peak
# The area preserving one seems to be about 18% higher
# but with a tight correllation
peak = (sum0 * dx) / math.sqrt(2*sigma*math.pi)
fwhm = 2.35482 * sigma
return (peak, xmean, fwhm)
def run(self):
#
self._summary = {} # prepare to make a summary here
dt = utils.Dtime("Ingest") # timer for debugging
do_cbeam = True # enforce a common beam
#
pb = self.getkey('pb')
do_pb = len(pb) > 0
use_pb = self.getkey("usepb")
#
create_mask = self.getkey('mask') # create a new mask ?
box = self.getkey("box") # corners in Z, XY or XYZ
edge = self.getkey("edge") # number of edge channels to remove
restfreq = self.getkey("restfreq") # < 0 means not activated
# smooth= could become deprecated, and/or include a decimation option to make it useful
# again, Smooth_AT() does this also , at the cost of an extra cube to store
smooth = self.getkey("smooth") #
#
vlsr = self.getkey("vlsr") # see also LineID, where this could be given again
# first place a fits file in the admit project directory (symlink)
# this is a bit involved, depending on if an absolute or relative path was
# give to Ingest_AT(file=)
fitsfile = self.getkey('file')
if fitsfile[0] != os.sep:
fitsfile = os.path.abspath(os.getcwd() + os.sep + fitsfile)
logging.debug('FILE=%s' % fitsfile)
if fitsfile[0] != os.sep:
raise Exception,"Bad file=%s, expected absolute name",fitsfile
# now determine if it could have been a CASA (or MIRIAD) image already
# which we'll assume if it's a directory; this is natively supported by CASA
# but there are tools where if you pass it a FITS or MIRIAD
# MIRIAD is not recommended for serious work, especially big files, since there
# is a performance penalty due to tiling.
file_is_casa = casautil.iscasa(fitsfile)
loc = fitsfile.rfind(os.sep) # find the '/'
ffile0 = fitsfile[loc+1:] # basename.fits
basename = self.getkey('basename') # (new) basename allowed (allow no dots?)
if len(basename) == 0:
basename = ffile0[:ffile0.rfind('.')] # basename
logging.info("basename=%s" % basename)
target = self.dir(ffile0)
if not os.path.exists(target) :
cmd = 'ln -s "%s" "%s"' % (fitsfile, target)
logging.debug("CMD: %s" % cmd)
os.system(cmd)
readonly = False
if file_is_casa:
logging.debug("Assuming input %s is a CASA (or MIRIAD) image" % ffile0)
bdpfile = self.mkext(basename,"im")
if bdpfile == ffile0:
logging.warning("No selections allowed on CASA image, since no alias was given")
readonly = True
b1 = SpwCube_BDP(bdpfile)
self.addoutput(b1)
b1.setkey("image", Image(images={bt.CASA:bdpfile}))
# @todo b2 and PB?
else:
# construct the output name and construct the BDP based on the CASA image name
# this also takes care of the behind the scenes alias= substitution
bdpfile = self.mkext(basename,"im")
if bdpfile == basename:
raise Exception,"basename and bdpfile are the same, Ingest_AT needs a fix for this"
b1 = SpwCube_BDP(bdpfile)
self.addoutput(b1)
if do_pb:
print "doing the PB"
bdpfile2 = self.mkext(basename,"pb")
b2 = Image_BDP(bdpfile2)
self.addoutput(b2)
# @todo we should also set readonly=True if no box, no mask etc. and still an alias
# that way it will speed up and not make a copy of the image ?
# fni and fno are full (abspath) filenames, ready for CASA
# fni is the same as fitsfile
fni = self.dir(ffile0)
fno = self.dir(bdpfile)
if do_pb: fno2 = self.dir(bdpfile2)
dt.tag("start")
if file_is_casa:
taskinit.ia.open(fni)
else:
if do_pb and use_pb:
# @todo this needs a fix for the path for pb, only works if abs path is given
# impbcor(im.fits,pb.fits,out.im,overwrite=True,mode='m')
if False:
# this may seem like a nice shortcut, to have the fits->casa conversion be done
# internally in impbcor, but it's a terrible performance for big cubes. (tiling?)
# we keep this code here, perhaps at some future time (mpi?) this performs better
# @todo fno2
impbcor(fni,pb,fno,overwrite=True,mode='m')
dt.tag("impbcor-1")
else:
# the better way is to convert FITS->CASA and then call impbcor()
# the CPU savings are big, but I/O overhead can still be substantial
taskinit.ia.fromfits('_pbcor',fni,overwrite=True)
taskinit.ia.fromfits('_pb',pb,overwrite=True)
dt.tag("impbcor-1f")
if False:
impbcor('_pbcor','_pb',fno,overwrite=True,mode='m')
# @todo fno2
utils.remove('_pbcor')
utils.remove('_pb')
dt.tag("impbcor-2")
else:
# immath appears to be even faster (2x in CPU)
# https://bugs.nrao.edu/browse/CAS-8299
# @todo this needs to be confirmed that impbcor is now good to go (r36078)
casa.immath(['_pbcor','_pb'],'evalexpr',fno,'IM0*IM1')
dt.tag("immath")
if True:
# use the mean of all channels... faster may be to use the middle plane
# barf; edge channels can be with fewer subfields in a mosaic
taskinit.ia.open('_pb')
taskinit.ia.summary()
ia1=taskinit.ia.moments(moments=[-1],drop=True,outfile=fno2)
ia1.done()
taskinit.ia.close()
dt.tag("moments")
utils.remove('_pbcor')
utils.remove('_pb')
dt.tag("impbcor-3")
elif do_pb and not use_pb:
# cheat case: PB was given, but not meant to be used
# not implemented yet
print "cheat case dummy PB not implemented yet"
else:
# no PB given
if True:
# re-running this was more consistently faster in wall clock time
# note that zeroblanks=True will still keep the mask
logging.debug("casa::ia.fromfits(%s) -> %s" % (fni,bdpfile))
taskinit.ia.fromfits(fno,fni,overwrite=True)
#taskinit.ia.fromfits(fno,fni,overwrite=True,zeroblanks=True)
dt.tag("fromfits")
else:
# not working to extend 3D yet, but this would solve the impv() 3D problem
logging.debug("casa::importfits(%s) -> %s" % (fni,bdpfile))
#casa.importfits(fni,fno,defaultaxes=True,defaultaxesvalues=[None,None,None,'I'])
# possible bug: zeroblanks=True has no effect?
casa.importfits(fni,fno,zeroblanks=True)
dt.tag("importfits")
taskinit.ia.open(fno)
if len(smooth) > 0:
# smooth here, but Smooth_AT is another option
# here we only allow pixel smoothing
# spatial: gauss
# spectral: boxcar/hanning (check for flux conservation)
# is the boxcar wrong, not centered, but edged?
# @todo CASA BUG: this will loose the object name (and maybe more?) from header, so VLSR lookup fails
fnos = fno + '.smooth'
taskinit.ia.convolve2d(outfile=fnos, overwrite=True, pa='0deg',
major='%gpix' % smooth[0], minor='%gpix' % smooth[1], type='gaussian')
taskinit.ia.close()
srcname = casa.imhead(fno,mode="get",hdkey="object") # work around CASA bug
#@todo use safer ia.rename() here.
# https://casa.nrao.edu/docs/CasaRef/image.rename.html
utils.rename(fnos,fno)
casa.imhead(fno,mode="put",hdkey="object",hdvalue=srcname) # work around CASA bug
dt.tag("convolve2d")
if len(smooth) > 2 and smooth[2] > 0:
if smooth[2] == 1:
# @todo only 1 channel option
specsmooth(fno,fnos,axis=2,function='hanning',dmethod="")
else:
# @todo may have the wrong center
specsmooth(fno,fnos,axis=2,function='boxcar',dmethod="",width=smooth[2])
#@todo use safer ia.rename() here.
# https://casa.nrao.edu/docs/CasaRef/image.rename.html
utils.rename(fnos,fno)
dt.tag("specsmooth")
taskinit.ia.open(fno)
s = taskinit.ia.summary()
if len(s['shape']) != 4:
logging.warning("Adding dummy STOKES-I axis")
fnot = fno + '_4'
taskinit.ia.adddegaxes(stokes='I',outfile=fnot)
taskinit.ia.close()
#@todo use safer ia.rename() here.
# https://casa.nrao.edu/docs/CasaRef/image.rename.html
utils.rename(fnot,fno)
taskinit.ia.open(fno)
dt.tag("adddegaxes")
else:
logging.info("SHAPE: %s" % str(s['shape']))
s = taskinit.ia.summary()
dt.tag("summary-0")
if s['hasmask'] and create_mask:
logging.warning("no extra mask created because input image already had one")
create_mask = False
# if a box= or edge= was given, only a subset of the cube needs to be ingested
# this however complicates PB correction later on
if len(box) > 0 or len(edge) > 0:
if readonly:
raise Exception,"Cannot use box= or edge=, data is read-only, or use an basename/alias"
if len(edge) == 1: edge.append(edge[0])
nx = s['shape'][0]
ny = s['shape'][1]
nz = s['shape'][2]
logging.info("box=%s edge=%s processing with SHAPE: %s" % (str(box),str(edge),str(s['shape'])))
if len(box) == 2:
# select zrange
if len(edge)>0:
raise Exception,"Cannot use edge= when box=[z1,z2] is used"
r1 = taskinit.rg.box([0,0,box[0]] , [nx-1,ny-1,box[1]])
elif len(box) == 4:
if len(edge) == 0:
# select just an XY box
r1 = taskinit.rg.box([box[0],box[1]] , [box[2],box[3]])
elif len(edge) == 2:
# select an XY box, but remove some edge channels
r1 = taskinit.rg.box([box[0],box[1],edge[0]] , [box[2],box[3],nz-edge[1]-1])
else:
raise Exception,"Bad edge= for len(box)=4"
elif len(box) == 6:
# select an XYZ box
r1 = taskinit.rg.box([box[0],box[1],box[2]] , [box[3],box[4],box[5]])
elif len(edge) == 2:
# remove some edge channels, but keep the whole XY box
r1 = taskinit.rg.box([0,0,edge[0]] , [nx-1,ny-1,nz-edge[1]-1])
else:
raise Exception,"box=%s illegal" % box
logging.debug("BOX/EDGE selection: %s %s" % (str(r1['blc']),str(r1['trc'])))
#if taskinit.ia.isopen(): taskinit.ia.close()
logging.info("SUBIMAGE")
subimage = taskinit.ia.subimage(region=r1,outfile=fno+'.box',overwrite=True)
taskinit.ia.close()
taskinit.ia.done()
subimage.rename(fno,overwrite=True)
subimage.close()
subimage.done()
taskinit.ia.open(fno)
dt.tag("subimage-1")
else:
# the whole cube is passed onto ADMIT
if readonly and create_mask:
raise Exception,"Cannot use mask=True, data read-only, or use an alias"
if file_is_casa and not readonly:
# @todo a miriad file - which should be read only - will also create a useless copy here if no alias used
taskinit.ia.subimage(overwrite=True,outfile=fno)
taskinit.ia.close()
taskinit.ia.open(fno)
dt.tag("subimage-0")
if create_mask:
if readonly:
raise Exception,"Cannot create mask, data read-only, or use an alias"
# also check out the 'fromfits::zeroblanks = False'
# calcmask() will overwrite any previous pixelmask
#taskinit.ia.calcmask('mask("%s") && "%s" != 0.0' % (fno,fno))
taskinit.ia.calcmask('"%s" != 0.0' % fno)
dt.tag("mask")
s = taskinit.ia.summary()
dt.tag("summary-1")
# do a fast statistics (no median or robust)
s0 = taskinit.ia.statistics()
dt.tag("statistics")
if len(s0['npts']) == 0:
raise Exception,"No statistics possible, are there valid data in this cube?"
# There may be multiple beams per plane so we can't
# rely on the BEAM's 'major', 'minor', 'positionangle' being present.
# ia.commonbeam() is guaranteed to return beam parameters
# if present
if do_cbeam and s.has_key('perplanebeams'):
# report on the beam extremities, need to loop over all,
# first and last don't need to be extremes....
n = s['perplanebeams']['nChannels']
ab0 = '*0'
bb0 = s['perplanebeams']['beams'][ab0]['*0']
bmaj0 = bb0['major']['value']
bmin0 = bb0['minor']['value']
beamd = 0.0
for i in range(n):
ab1 = '*%d' % i
bb1 = s['perplanebeams']['beams'][ab1]['*0']
bmaj1 = bb1['major']['value']
bmin1 = bb1['minor']['value']
beamd = max(beamd,abs(bmaj0-bmaj1),abs(bmin0-bmin1))
logging.warning("MAX-BEAMSPREAD %f" % (beamd))
#
if True:
logging.info("Applying a commonbeam from the median beam accross the band")
# imhead is a bit slow; alternatively use ia.summary() at the half point for setrestoringbeam()
h = casa.imhead(fno,mode='list')
b = h['perplanebeams']['median area beam']
taskinit.ia.setrestoringbeam(remove=True)
taskinit.ia.setrestoringbeam(beam=b)
commonbeam = taskinit.ia.commonbeam()
else:
# @todo : this will be VERY slow - code not finished, needs renaming etc.
# this is however formally the better solution
logging.warning("commmonbeam code not finished")
cb = taskinit.ia.commonbeam()
taskinit.ia.convolve2d(outfile='junk-common.im', major=cb['major'], minor=cb['minor'], pa=cb['pa'],
targetres=True, overwrite=True)
dt.tag('convolve2d')
commonbeam = {}
else:
try:
commonbeam = taskinit.ia.commonbeam()
except:
nppb = 4.0
logging.warning("No synthesized beam found, faking one to prevent downstream problems: nppb=%f" % nppb)
s = taskinit.ia.summary()
cdelt2 = abs(s['incr'][0]) * 180.0/math.pi*3600.0
bmaj = nppb * cdelt2 # use a nominal 4 points per (round) beam
bmin = nppb * cdelt2
bpa = 0.0
taskinit.ia.setrestoringbeam(major='%farcsec' % bmaj, minor='%farcsec' % bmin, pa='%fdeg' % bpa)
commonbeam = {}
logging.info("COMMONBEAM[%d] %s" % (len(commonbeam),str(commonbeam)))
first_point = taskinit.ia.getchunk(blc=[0,0,0,0],trc=[0,0,0,0],dropdeg=True)
logging.debug("DATA0*: %s" % str(first_point))
taskinit.ia.close()
logging.info('BASICS: [shape] npts min max: %s %d %f %f' % (s['shape'],s0['npts'][0],s0['min'][0],s0['max'][0]))
logging.info('S/N (all data): %f' % (s0['max'][0]/s0['rms'][0]))
npix = 1
nx = s['shape'][0]
ny = s['shape'][1]
nz = s['shape'][2]
for n in s['shape']:
npix = npix * n
ngood = int(s0['npts'][0])
fgood = (1.0*ngood)/npix
logging.info('GOOD PIXELS: %d/%d (%f%% good or %f%% bad)' % (ngood,npix,100.0*fgood,100.0*(1 - fgood)))
if s['hasmask']:
logging.warning('MASKS: %s' % (str(s['masks'])))
if not file_is_casa:
b1.setkey("image", Image(images={bt.CASA:bdpfile}))
if do_pb:
b2.setkey("image", Image(images={bt.CASA:bdpfile2}))
# cube sanity: needs to be either 4D or 2D. But p-p-v cube
# alternative: ia.subimage(dropdeg = True)
# see also: https://bugs.nrao.edu/browse/CAS-5406
shape = s['shape']
if len(shape)>3:
if shape[3]>1:
# @todo this happens when you ingest a fits or casa image which is ra-dec-pol-freq
if nz > 1:
msg = 'Ingest_AT: cannot deal with real 4D cubes yet'
logging.critical(msg)
raise Exception,msg
else:
# @todo this is not working yet when the input was a casa image, but ok when fits. go figure.
fnot = fno + ".trans"
if True:
# this works
#@todo use safer ia.rename() here.
# https://casa.nrao.edu/docs/CasaRef/image.rename.html
utils.rename(fno,fnot)
imtrans(fnot,fno,"0132")
utils.remove(fnot)
else:
# this does not work, what the heck
imtrans(fno,fnot,"0132")
#@todo use safer ia.rename() here.
# https://casa.nrao.edu/docs/CasaRef/image.rename.html
utils.rename(fnot,fno)
nz = s['shape'][3]
# get a new summary 's'
taskinit.ia.open(fno)
s = taskinit.ia.summary()
taskinit.ia.close()
logging.warning("Using imtrans, with nz=%d, to fix axis ordering" % nz)
dt.tag("imtrans4")
# @todo ensure first two axes are position, followed by frequency
elif len(shape)==3:
# the current importfits() can do defaultaxes=True,defaultaxesvalues=['', '', '', 'I']
# but then appears to return a ra-dec-pol-freq cube
# this branch probably never happens, since ia.fromfits() will
# properly convert a 3D cube to 4D now !!
# NO: when NAXIS=3 but various AXIS4's are present, that works. But not if it's pure 3D
# @todo box=
logging.warning("patching up a 3D to 4D cube")
raise Exception,"SHOULD NEVER GET HERE"
fnot = fno + ".trans"
casa.importfits(fni,fnot,defaultaxes=True,defaultaxesvalues=['', '', '', 'I'])
utils.remove(fno) # ieck
imtrans(fnot,fno,"0132")
utils.remove(fnot)
dt.tag("imtrans3")
logging.regression('CUBE: %g %g %g %d %d %d %f' % (s0['min'],s0['max'],s0['rms'],nx,ny,nz,100.0*(1 - fgood)))
# if the cube has only 1 plane (e.g. continuum) , create a visual (png or so)
# for 3D cubes, rely on something like CubeSum
if nz == 1:
implot = ImPlot(pmode=self._plot_mode,ptype=self._plot_type,abspath=self.dir())
implot.plotter(rasterfile=bdpfile,figname=bdpfile)
# @todo needs to be registered for the BDP, right now we only have the plot
# ia.summary() doesn't have this easily available, so run the more expensive imhead()
h = casa.imhead(fno,mode='list')
telescope = h['telescope']
# work around CASA's PIPELINE bug/feature? if 'OBJECT' is blank, try 'FIELD'
srcname = h['object']
if srcname == ' ':
logging.warning('FIELD used for OBJECT')
srcname = casa.imhead(fno,mode='get',hdkey='field')
if srcname == False:
# if no FIELD either, we're doomed. yes, this did happen.
srcname = 'Unknown'
casa.imhead(fno,mode="put",hdkey="object",hdvalue=srcname)
h['object'] = srcname
logging.info('TELESCOPE: %s' % telescope)
logging.info('OBJECT: %s' % srcname)
logging.info('REFFREQTYPE: %s' % h['reffreqtype'])
if h['reffreqtype'].find('TOPO')>=0:
msg = 'Ingest_AT: cannot deal with cubes with TOPOCENTRIC frequencies yet - winging it'
logging.warning(msg)
#raise Exception,msg
# Ensure beam parameters are available if there are multiple beams
# If there is just one beam, then we are just overwriting the header
# variables with their identical values.
if len(commonbeam) != 0:
h['beammajor'] = commonbeam['major']
h['beamminor'] = commonbeam['minor']
h['beampa'] = commonbeam['pa']
# cheat add some things that need to be passed to summary....
h['badpixel'] = 1.0-fgood
if vlsr < -999998.0:
vlsr = admit.VLSR().vlsr(h['object'].upper())
h['vlsr'] = vlsr
logging.info("VLSR = %f (from source catalog)" % vlsr)
taskargs = "file=" + fitsfile
if create_mask == True:
taskargs = taskargs + " mask=True"
if len(box) > 0:
taskargs = taskargs + " " + str(box)
if len(edge) > 0:
taskargs = taskargs + " " + str(edge)
r2d = 57.29577951308232
logging.info("RA Axis 1: %f %f %f" % (h['crval1']*r2d,h['cdelt1']*r2d*3600.0,h['crpix1']))
logging.info("DEC Axis 2: %f %f %f" % (h['crval2']*r2d,h['cdelt2']*r2d*3600.0,h['crpix2']))
if nz > 1:
# @todo check if this is really a freq axis (for ALMA it is, but...)
t3 = h['ctype3']
df = h['cdelt3']
fc = h['crval3'] + (0.5*(float(shape[2])-1)-h['crpix3'])*df # center freq; 0 based pixels
if h.has_key('restfreq'):
fr = float(h['restfreq'][0])
else:
fr = fc
fw = df*float(shape[2])
dv = -df/fr*utils.c
logging.info("Freq Axis 3: %g %g %g" % (h['crval3']/1e9,h['cdelt3']/1e9,h['crpix3']))
logging.info("Cube Axis 3: type=%s velocity increment=%f km/s @ fc=%f fw=%f GHz" % (t3,dv,fc/1e9,fw/1e9))
# @todo sort out this restfreq/vlsr
# report 'reffreqtype', 'restfreq' 'telescope'
# if the fits file has ALTRVAL/ALTRPIX, this is lost in CASA?
# but if you do fits->casa->fits , it's back in fits (with some obvious single precision loss of digits)
# @todo ZSOURCE is the proposed VLSR slot in the fits header, but this has frame issues (it's also optical)
#
# Another method to get the vlsr is to override the restfreq (f0) with an AT keyword
# and the 'restfreq' from the header (f) is then used to compute the vlsr: v = c (1 - f/f0)
#
if shape[2] > 1 and h.has_key('restfreq'):
logging.info("RESTFREQ: %g %g %g" % (fr/1e9,h['restfreq'][0]/1e9,restfreq))
if shape[2] > 1:
# v_radio of the center of the window w.r.t. restfreq
c = utils.c # 299792.458 km/s
vlsrc = c*(1-fc/fr) # @todo rel frame?
vlsrw = dv*float(shape[2])
if restfreq > 0:
vlsrf = c*(1-fr/restfreq/1e9)
h['vlsr'] = vlsrf
else:
vlsrf = 0.0
logging.info("VLSRc = %f VLSRw = %f VLSRf = %f VLSR = %f" % (vlsrc, vlsrw, vlsrf, vlsr))
if h['vlsr'] == 0.0: # @todo! This fails if vlsr actually is zero. Need another magic number
h['vlsr'] = vlsrc
logging.warning("Warning: No VLSR found, substituting VLSRc = %f" % vlsrc)
else:
msg = 'Ingest_AT: missing RESTFREQ'
print msg
# @todo LINTRN is the ALMA keyword that designates the expected line transition in a spw
self._summarize(fitsfile, bdpfile, h, shape, taskargs)
dt.tag("done")
dt.end()
