def __init__(self, log, pipeline, sigma, outdir, tracks_filename,
interval,
min_led_distance,
detect_smooth_sigma,
npeaks,
write_png=False):
# get configuration
blink_detect_config = get_blink_config(log)
frequencies = blink_detect_config.get_frequencies()
self.trackers = []
for f in frequencies:
others = list(frequencies)
others.remove(f)
tracker = TrackerFixedFreq(f, sigma=sigma, interval=interval)
self.trackers.append(tracker)
# start track log
self.tracklog = AERTrackLogWriter(tracks_filename)
params = dict(frequencies=frequencies,
sigma=sigma, weight_others=None,
interval=interval)
self.tracklog.write_comment('params: %s' % params)
# open files
if False:
raw_sequence = aer_load_log_generic(log)
self.transitions = aer_pipeline_transitions1(raw_sequence, pipeline)
else:
self.transitions = aer_pipeline_transitions1_all(log, pipeline)
# save params needed later
self.detect_smooth_sigma = detect_smooth_sigma
self.detect_neighbors = int(min_led_distance)
self.min_led_distance = int(min_led_distance)
# self.write_png = write_png
self.outdir = outdir
self.npeaks = npeaks
