def process():
if len(sys.argv) <= 1: # default behavior, run general test
print("")
nfail = module_test_lib.num_import_failures(verb=2)
print("\nnumber of python import failures = %d\n" % nfail)
return nfail
# create elemnnt and initialize options
MT = ModuleTest()
MT.init_opts()
# read options, return on terminal option or bad usage
rv = MT.read_opts()
if rv != None:
if rv: MT.show_failed_command()
return rv
# apply options
rv = MT.process_opts()
if rv != None:
if rv: MT.show_failed_command()
return rv
# do stuff
rv = MT.execute()
if rv != None:
if rv: MT.show_failed_command()
return rv
def __init__(self, sport, verb=1):
global g_SER # global reference for serial library
# see if the serial library is available
if module_test_lib.num_import_failures(['serial']): return None
import serial
g_SER = serial
# main variables
self.verb = verb # verbose level
self.port_file = sport # file for serial port
self.data_port = None # serial data port
self.swap = 0 # whether to swap serial bytes
if self.verb > 1: print('++ initializing serial interface %s...' % sport)
def execute(self):
if self.show_pyver:
if self.verb <= 1:
vlist = sys.version.split()
vstr = vlist[0]
else:
vstr = sys.version
print('python version: %s' % vstr)
if self.show_platform:
try:
import platform
print('platform: %s' % platform.platform())
except:
print('platform: ** module not found')
if self.show_modtest:
nfail = module_test_lib.num_import_failures(self.modlist,
details=1,
verb=self.verb)
print("\nnumber of python import failures = %d\n" % nfail)
return None
def set_demo_gui(self):
"""create the GUI for display of the demo data"""
testlibs = ['numpy', 'wx']
if module_test_lib.num_import_failures(testlibs):
return 1
try:
import numpy as N, wx
from afnipy import lib_RR_plot as LPLOT
except:
return 1
self.wx_app = wx.App()
self.demo_frame = LPLOT.CanvasFrame(title='receiver demo')
self.demo_frame.EnableCloseButton(True)
self.demo_frame.Show(True)
self.demo_frame.style = 'bar'
self.demo_frame.xlabel = 'most recent 10 TRs'
self.demo_frame.ylabel = 'scaled diff_ratio'
# for the current demo, set an ranges for 10 numbers in [0,10]
if self.demo_frame.style == 'graph':
self.demo_frame.set_limits(0,9.1,-0.1,10.1)
elif self.demo_frame.style == 'bar':
self.demo_frame.set_limits(0,10.1,-0.1,10.1)
#!/usr/bin/env python
# python3 status: started
# system libraries
import sys, os
# AFNI libraries (test first)
from afnipy import module_test_lib
g_testlibs = [
'afnipy.option_list', 'afnipy.afni_util', 'afnipy.lib_system_check'
]
if module_test_lib.num_import_failures(g_testlibs, details=0, verb=1):
print("\n** failed to load standard AFNI python libraries")
print(" python version = %s" % sys.version.split()[0])
sys.exit(1)
# now load AFNI libraries by name
from afnipy import option_list as OL
from afnipy import afni_util as UTIL # not actually used, but probably will be
from afnipy import lib_system_check as SC
g_dotfiles = ['.profile', '.bash_profile', '.bashrc', '.cshrc', '.tcshrc']
g_help_string = """
=============================================================================
afni_system_check.py - perform various system checks
This program is intended to be helpful for figuring out AFNI installation
issues.
#!/usr/bin/env python
# python3 status: started
# library for performing various system checks
import os, sys
from afnipy import module_test_lib as MT
# test dependency libs before proceeding
# note: platform came with python 2.3
testlibs = ['platform', 'afnipy.afni_base', 'afnipy.afni_util']
if MT.num_import_failures(testlibs):
sys.exit(1)
import platform, glob
from afnipy import afni_base as BASE
from afnipy import afni_util as UTIL
class SysInfo:
"""system info class"""
def __init__(self, data_root='', verb=1):
self.system = platform.system()
self.home_dir = os.environ['HOME']
self.data_root = data_root
self.verb = verb
self.afni_ver = ''
self.afni_label = ''
#!/usr/bin/env python
# basically, a GUI to write an afni_proc.py command
import sys, os, copy, math
# system libraries : test, then import as local symbols
from afnipy import module_test_lib
testlibs = ['copy', 'signal']
if module_test_lib.num_import_failures(testlibs): sys.exit(1)
import copy
from afnipy import afni_util as UTIL
from afnipy import lib_subjects as SUBJ
from afnipy import lib_vars_object as VO
from afnipy import lib_uber_skel as USKEL
from afnipy import option_list as OPT
g_command_help = """
===========================================================================
uber_skel.py - sample uber processing program
(based on uber_align_test.py, version 0.2)
usage: uber_skel.py
---
This help describes only the command line options to this program, which
enables one to:
- initialize user variables (for GUI or command line)
def test_libraries(self,verb=2):
"""test for existence of needed python libraries"""
from afnipy import module_test_lib as MLT
libs = ['os', 'gc', 'numpy', 'wx', 'matplotlib', 'scipy']
if MLT.num_import_failures(libs,details=1,verb=verb): return 1
else: return 0
