def modelLikelihood(self, params):
'''
Compute the likelihood of model (df+potential specified by scaled params)
against the data (array of Nx6 position/velocity coordinates of tracer particles).
This is the function to be maximized; if parameters are outside the allowed range, it returns -infinity
'''
prior = self.model.prior(params)
if prior == -numpy.inf:
print "Out of range"
return prior
try:
# Compute log-likelihood of DF with given params against an array of actions
pot = self.model.createPotential(params)
df = self.model.createDF(params)
if phase_space_info_mode == 6: # actions of tracer particles
if self.particles.shape[
0] > 2000: # create an action finder object for a faster evaluation
actions = agama.ActionFinder(pot)(self.particles)
else:
actions = agama.actions(self.particles, pot)
df_val = df(actions) # values of DF for these actions
else: # have full phase space info for resampled input particles (missing components are filled in)
af = agama.ActionFinder(pot)
actions = af(
self.samples) # actions of resampled tracer particles
# compute values of DF for these actions, multiplied by sample weights
df_val = df(actions) * self.weights
# compute the weighted sum of likelihoods of all samples for a single particle,
# replacing the improbable samples (with NaN as likelihood) with zeroes
df_val = numpy.sum(numpy.nan_to_num(
df_val.reshape(-1, num_subsamples)),
axis=1)
loglike = numpy.sum(numpy.log(df_val))
if numpy.isnan(loglike): loglike = -numpy.inf
loglike += prior
print "LogL=%.8g" % loglike
return loglike
except ValueError as err:
print "Exception ", err
return -numpy.inf
def modelLikelihood(self, params):
'''
Compute the likelihood of model (df+potential specified by scaled params)
against the data (array of Nx6 position/velocity coordinates of tracer particles).
This is the function to be maximized; if parameters are outside the allowed range, it returns -infinity
'''
prior = self.model.prior(params)
if prior == -numpy.inf:
print "Out of range"
return prior
try:
# Compute log-likelihood of DF with given params against an array of actions
pot = self.model.createPotential(params)
df = self.model.createDF(params)
if phase_space_info_mode == 6: # actions of tracer particles
if self.particles.shape[0] > 2000: # create an action finder object for a faster evaluation
actions = agama.ActionFinder(pot)(self.particles)
else:
actions = agama.actions(self.particles, pot)
df_val = df(actions) # values of DF for these actions
else: # have full phase space info for resampled input particles (missing components are filled in)
af = agama.ActionFinder(pot)
actions = af(self.samples) # actions of resampled tracer particles
# compute values of DF for these actions, multiplied by sample weights
df_val = df(actions) * self.weights
# compute the weighted sum of likelihoods of all samples for a single particle,
# replacing the improbable samples (with NaN as likelihood) with zeroes
df_val = numpy.sum(numpy.nan_to_num(df_val.reshape(-1, num_subsamples)), axis=1)
loglike = numpy.sum( numpy.log( df_val ) )
if numpy.isnan(loglike): loglike = -numpy.inf
loglike += prior
print "LogL=%.8g" % loglike
return loglike
except ValueError as err:
print "Exception ", err
return -numpy.inf
def compare(ic, inttime, numsteps):
g_orb_obj = galpy.orbit.Orbit([ic[0],ic[3],ic[5],ic[1],ic[4],ic[2]])
times = numpy.linspace(0, inttime, numsteps)
dt = time.time()
g_orb_obj.integrate(times, g_pot)
g_orb = g_orb_obj.getOrbit()
print 'Time to integrate orbit in galpy: %s s' % (time.time()-dt)
dt = time.time()
c_orb_car = agama.orbit(ic=[ic[0],0,ic[1],ic[3],ic[5],ic[4]], pot=w_pot._pot, time=inttime, step=inttime/numsteps)
print 'Time to integrate orbit in Agama: %s s' % (time.time()-dt)
times_c = numpy.linspace(0,inttime,len(c_orb_car[:,0]))
### make it compatible with galpy's convention (native output is in cartesian coordinates)
c_orb = c_orb_car*1.0
c_orb[:,0] = (c_orb_car[:,0]**2+c_orb_car[:,1]**2)**0.5
c_orb[:,3] = c_orb_car[:,2]
### in galpy, this is the only tool that can estimate interfocal distance,
### but it requires the orbit to be computed first
delta = estimateDeltaStaeckel(g_orb[:,0], g_orb[:,3], pot=g_pot)
print "interfocal distance Delta=",delta
### plot the orbit(s) in R,z plane, along with the prolate spheroidal coordinate grid
plt.axes([0.05, 0.55, 0.45, 0.45])
plotCoords(delta, 1.5)
plt.plot(g_orb[:,0],g_orb[:,3], 'b', label='galpy') # R,z
plt.plot(c_orb[:,0],c_orb[:,3], 'g', label='Agama') # R,z
plt.xlabel("R/8kpc")
plt.ylabel("z/8kpc")
plt.xlim(0, 1.2)
plt.ylim(-1,1)
plt.legend()
### plot R(t), z(t)
plt.axes([0.55, 0.55, 0.45, 0.45])
plt.plot(times, g_orb[:,0], label='R')
plt.plot(times, g_orb[:,3], label='z')
plt.xlabel("t")
plt.ylabel("R,z")
plt.legend()
plt.xlim(0,50)
### create galpy action/angle finder for the given value of Delta
### note: using c=False in the routine below is much slower but apparently more accurate,
### comparable to the Agama for the same value of delta
g_actfinder = galpy.actionAngle.actionAngleStaeckel(pot=g_pot, delta=delta, c=True)
### find the actions for each point of the orbit
dt = time.time()
g_act = g_actfinder(g_orb[:,0],g_orb[:,1],g_orb[:,2],g_orb[:,3],g_orb[:,4],fixed_quad=True)
print 'Time to compute actions in galpy: %s s' % (time.time()-dt)
### use the Agama action routine for the same value of Delta as in galpy
dt = time.time()
c_act = agama.actions(point=c_orb_car, pot=w_pot._pot, ifd=delta) # explicitly specify interfocal distance
print 'Time to compute actions in Agama: %s s' % (time.time()-dt)
### use the Agama action finder (initialized at the beginning) that automatically determines the best value of Delta
dt = time.time()
a_act = c_actfinder(c_orb_car) # use the interfocal distance estimated by action finder
print 'Time to compute actions in Agama: %s s' % (time.time()-dt)
### plot Jr vs Jz
plt.axes([0.05, 0.05, 0.45, 0.45])
plt.plot(g_act[0],g_act[2], label='galpy')
plt.plot(c_act[:,0],c_act[:,1], label=r'Agama,$\Delta='+str(delta)+'$')
plt.plot(a_act[:,0],a_act[:,1], label=r'Agama,$\Delta=$auto')
plt.xlabel("$J_r$")
plt.ylabel("$J_z$")
plt.legend()
### plot Jr(t) and Jz(t)
plt.axes([0.55, 0.05, 0.45, 0.45])
plt.plot(times, g_act[0], label='galpy', c='b')
plt.plot(times, g_act[2], c='b')
plt.plot(times_c, c_act[:,0], label='Agama,$\Delta='+str(delta)+'$', c='g')
plt.plot(times_c, c_act[:,1], c='g')
plt.plot(times_c, a_act[:,0], label='Agama,$\Delta=$auto', c='r')
plt.plot(times_c, a_act[:,1], c='r')
plt.text(0, c_act[0,0], '$J_r$', fontsize=16)
plt.text(0, c_act[0,1], '$J_z$', fontsize=16)
plt.xlabel("t")
plt.ylabel("$J_r, J_z$")
plt.legend(loc='center right')
plt.xlim(0,50)
plt.show()
def compare(ic, inttime, numsteps):
g_orb_obj = galpy.orbit.Orbit([ic[0],ic[3],ic[5],ic[1],ic[4],ic[2]])
times = numpy.linspace(0, inttime, numsteps)
dt = time.time()
g_orb_obj.integrate(times, g_pot)
g_orb = g_orb_obj.getOrbit()
print 'Time to integrate orbit in galpy: %s s' % (time.time()-dt)
dt = time.time()
times_c, c_orb_car = agama.orbit(ic=[ic[0],0,ic[1],ic[3],ic[5],ic[4]], potential=w_pot._pot, time=inttime, trajsize=numsteps)
print 'Time to integrate orbit in Agama: %s s' % (time.time()-dt)
### make it compatible with galpy's convention (native output is in cartesian coordinates)
c_orb = c_orb_car*1.0
c_orb[:,0] = (c_orb_car[:,0]**2+c_orb_car[:,1]**2)**0.5
c_orb[:,3] = c_orb_car[:,2]
### in galpy, this is the only tool that can estimate focal distance,
### but it requires the orbit to be computed first
delta = estimateDeltaStaeckel(g_pot, g_orb[:,0], g_orb[:,3])
print "interfocal distance Delta=",delta
### plot the orbit(s) in R,z plane, along with the prolate spheroidal coordinate grid
plt.axes([0.05, 0.55, 0.45, 0.45])
plotCoords(delta, 1.5)
plt.plot(g_orb[:,0],g_orb[:,3], 'b', label='galpy') # R,z
plt.plot(c_orb[:,0],c_orb[:,3], 'g', label='Agama') # R,z
plt.xlabel("R/8kpc")
plt.ylabel("z/8kpc")
plt.xlim(0, 1.2)
plt.ylim(-1,1)
plt.legend()
### plot R(t), z(t)
plt.axes([0.55, 0.55, 0.45, 0.45])
plt.plot(times, g_orb[:,0], label='R')
plt.plot(times, g_orb[:,3], label='z')
plt.xlabel("t")
plt.ylabel("R,z")
plt.legend()
plt.xlim(0,50)
### create galpy action/angle finder for the given value of Delta
### note: using c=False in the routine below is much slower but apparently more accurate,
### comparable to the Agama for the same value of delta
g_actfinder = galpy.actionAngle.actionAngleStaeckel(pot=g_pot, delta=delta, c=True)
### find the actions for each point of the orbit
dt = time.time()
g_act = g_actfinder(g_orb[:,0],g_orb[:,1],g_orb[:,2],g_orb[:,3],g_orb[:,4],fixed_quad=True)
print 'Time to compute actions in galpy: %s s' % (time.time()-dt)
### use the Agama action routine for the same value of Delta as in galpy
dt = time.time()
c_act = agama.actions(point=c_orb_car, potential=w_pot._pot, fd=delta) # explicitly specify focal distance
print 'Time to compute actions in Agama using Galpy-estimated focal distance: %s s' % (time.time()-dt)
### use the Agama action finder (initialized at the beginning) that automatically determines the best value of Delta
dt = time.time()
a_act = c_actfinder(c_orb_car) # use the focal distance estimated by action finder
print 'Time to compute actions in Agama using pre-initialized focal distance: %s s' % (time.time()-dt)
### use the interpolated Agama action finder (initialized at the beginning) - less accurate but faster
dt = time.time()
i_act = i_actfinder(c_orb_car)
print 'Time to compute actions in Agama with interpolated action finder: %s s' % (time.time()-dt)
### plot Jr vs Jz
plt.axes([0.05, 0.05, 0.45, 0.45])
plt.plot(g_act[0],g_act[2], label='galpy')
plt.plot(c_act[:,0],c_act[:,1], label=r'Agama,$\Delta='+str(delta)+'$')
plt.plot(a_act[:,0],a_act[:,1], label=r'Agama,$\Delta=$auto')
plt.plot(i_act[:,0],i_act[:,1], label=r'Agama,interpolated')
plt.xlabel("$J_r$")
plt.ylabel("$J_z$")
plt.legend(loc='lower left')
### plot Jr(t) and Jz(t)
plt.axes([0.55, 0.05, 0.45, 0.45])
plt.plot(times, g_act[0], label='galpy', c='b')
plt.plot(times, g_act[2], c='b')
plt.plot(times_c, c_act[:,0], label='Agama,$\Delta='+str(delta)+'$', c='g')
plt.plot(times_c, c_act[:,1], c='g')
plt.plot(times_c, a_act[:,0], label='Agama,$\Delta=$auto', c='r')
plt.plot(times_c, a_act[:,1], c='r')
plt.plot(times_c, i_act[:,0], label='Agama,interpolated', c='c')
plt.plot(times_c, i_act[:,1], c='c')
plt.text(0, c_act[0,0], '$J_r$', fontsize=16)
plt.text(0, c_act[0,1], '$J_z$', fontsize=16)
plt.xlabel("t")
plt.ylabel("$J_r, J_z$")
plt.legend(loc='center right')
plt.ylim(0.14,0.25)
plt.xlim(0,50)
plt.show()
def compare(ic, inttime, numsteps):
times = numpy.linspace(0, inttime, numsteps)
### integrate the orbit in galpy using MWPotential2014 from galpy
g_orb_obj = galpy.orbit.Orbit([ic[0], ic[3], ic[5], ic[1], ic[4], ic[2]])
dt = time.time()
g_orb_obj.integrate(times, g_pot)
g_orb = g_orb_obj.getOrbit()
print('Time to integrate orbit in galpy: %.4g s' % (time.time() - dt))
### integrate the orbit with the galpy routine, but using Agama potential instead
### (much slower because of repeated transfer of control between C++ and Python
dt = time.time()
g_orb_obj.integrate(times[:numsteps // 10], a_pot)
a_orb = g_orb_obj.getOrbit()
print(
'Time to integrate 1/10th of the orbit in galpy using Agama potential: %.4g s'
% (time.time() - dt))
### integrate the same orbit (note different calling conventions - cartesian coordinates as input)
### using both the orbit integration routine and the potential from Agama - much faster
dt = time.time()
times_c, c_orb_car = agama.orbit(ic=[ic[0],0,ic[1],ic[3],ic[5],ic[4]], \
potential=a_pot, time=inttime, trajsize=numsteps)
print('Time to integrate orbit in Agama: %.4g s' % (time.time() - dt))
### make it compatible with galpy's convention (native output is in cartesian coordinates)
c_orb = c_orb_car * 1.0
c_orb[:, 0] = (c_orb_car[:, 0]**2 + c_orb_car[:, 1]**2)**0.5
c_orb[:, 3] = c_orb_car[:, 2]
### in galpy, this is the only tool that can estimate focal distance,
### but it requires the orbit to be computed first
delta = float(
galpy.actionAngle.estimateDeltaStaeckel(g_pot, g_orb[:, 0], g_orb[:,
3]))
print('Focal distance estimated from the entire trajectory: Delta=%.4g' %
delta)
### plot the orbit(s) in R,z plane, along with the prolate spheroidal coordinate grid
plt.figure(figsize=(12, 8))
plt.axes([0.04, 0.54, 0.45, 0.45])
plotCoords(delta, 1.5)
plt.plot(g_orb[:, 0], g_orb[:, 3], 'b', label='galpy') # R,z
plt.plot(c_orb[:, 0], c_orb[:, 3], 'g', label='Agama')
plt.plot(a_orb[:, 0],
a_orb[:, 3],
'r',
label='galpy using Agama potential')
plt.xlabel("R/8kpc")
plt.ylabel("z/8kpc")
plt.xlim(0, 1.2)
plt.ylim(-1, 1)
plt.legend(loc='lower left', frameon=False)
### create galpy action/angle finder for the given value of Delta
### note: using c=False in the routine below is much slower but apparently more accurate,
### comparable to the Agama for the same value of delta
g_actfinder = galpy.actionAngle.actionAngleStaeckel(pot=g_pot,
delta=delta,
c=True)
### find the actions for each point of the orbit using galpy action finder
dt = time.time()
g_act = g_actfinder(g_orb[:, 0],
g_orb[:, 1],
g_orb[:, 2],
g_orb[:, 3],
g_orb[:, 4],
fixed_quad=True)
print('Time to compute actions in galpy: %.4g s' % (time.time() - dt))
print('Jr = %.6g +- %.4g, Jz = %.6g +- %.4g' % \
(numpy.mean(g_act[0]), numpy.std(g_act[0]), numpy.mean(g_act[2]), numpy.std(g_act[2])))
### use the Agama action routine for the same value of Delta as in galpy -
### the result is almost identical but computed much faster
dt = time.time()
c_act = agama.actions(point=c_orb_car, potential=a_pot,
fd=delta) # explicitly specify focal distance
print(
'Time to compute actions in Agama using Galpy-estimated focal distance: %.4g s'
% (time.time() - dt))
print('Jr = %.6g +- %.4g, Jz = %.6g +- %.4g' % \
(numpy.mean(c_act[:,0]), numpy.std(c_act[:,0]), numpy.mean(c_act[:,1]), numpy.std(c_act[:,1])))
### use the Agama action finder (initialized at the beginning) that automatically determines
### the best value of Delta (same computational cost as the previous one)
dt = time.time()
a_act = a_actfinder(
c_orb_car) # use the focal distance estimated by action finder
print(
'Time to compute actions in Agama using pre-initialized focal distance: %.4g s'
% (time.time() - dt))
print('Jr = %.6g +- %.4g, Jz = %.6g +- %.4g' % \
(numpy.mean(a_act[:,0]), numpy.std(a_act[:,0]), numpy.mean(a_act[:,1]), numpy.std(a_act[:,1])))
### use the interpolated Agama action finder (initialized at the beginning) - less accurate but faster
dt = time.time()
i_act = i_actfinder(c_orb_car)
print(
'Time to compute actions in Agama with interpolated action finder: %.4g s'
% (time.time() - dt))
print('Jr = %.6g +- %.4g, Jz = %.6g +- %.4g' % \
(numpy.mean(i_act[:,0]), numpy.std(i_act[:,0]), numpy.mean(i_act[:,1]), numpy.std(i_act[:,1])))
### plot Jr vs Jz
plt.axes([0.54, 0.54, 0.45, 0.45])
plt.plot(g_act[0], g_act[2], c='b', label='galpy')
plt.plot(c_act[:, 0],
c_act[:, 1],
c='g',
label=r'Agama,$\Delta=%.4f$' % delta)
plt.plot(a_act[:, 0], a_act[:, 1], c='r', label=r'Agama,$\Delta=$auto')
plt.plot(i_act[:, 0], i_act[:, 1], c='c', label=r'Agama,interpolated')
plt.xlabel("$J_r$")
plt.ylabel("$J_z$")
plt.legend(loc='lower left', frameon=False)
### plot Jr(t) and Jz(t)
plt.axes([0.04, 0.04, 0.95, 0.45])
plt.plot(times, g_act[0], c='b', label='galpy')
plt.plot(times, g_act[2], c='b')
plt.plot(times_c, c_act[:, 0], c='g', label='Agama,$\Delta=%.4f$' % delta)
plt.plot(times_c, c_act[:, 1], c='g')
plt.plot(times_c, a_act[:, 0], c='r', label='Agama,$\Delta=$auto')
plt.plot(times_c, a_act[:, 1], c='r')
plt.plot(times_c, i_act[:, 0], c='c', label='Agama,interpolated')
plt.plot(times_c, i_act[:, 1], c='c')
plt.text(0, c_act[0, 0], '$J_r$', fontsize=16)
plt.text(0, c_act[0, 1], '$J_z$', fontsize=16)
plt.xlabel("t")
plt.ylabel("$J_r, J_z$")
plt.legend(loc='center right', ncol=2, frameon=False)
#plt.ylim(0.14,0.25)
plt.xlim(0, 50)
plt.show()
def compare(ic, inttime, numsteps):
times = numpy.linspace(0, inttime, numsteps)
times1 = times[:numsteps //
10] # compute only 1/10th of the orbit to save time in galpy
### integrate the orbit in galpy using the native MWPotential2014 from galpy
g_orb_obj = galpy.orbit.Orbit(ic)
dt = time.time()
g_orb_obj.integrate(times, g_pot_native)
g_orb_g_native = g_orb_obj.getOrbit()
print(
'Time to integrate the orbit in galpy, using galpy-native potential [1]: %.4g s'
% (time.time() - dt))
### integrate the orbit again with the galpy routine, but now using the chimera potential
### representing a galpy-native underlying potential.
### since galpy has no idea that this potential has a C implementation, it switches to a slower
### pure-Python integration algorithm, so to save time, we compute only 1/10th of the orbit
dt = time.time()
g_orb_obj.integrate(times1, g_pot_hybrid)
g_orb_g_hybrid = g_orb_obj.getOrbit()
print(
'Time to integrate 1/10th of the orbit in galpy, using galpy-hybrid potential [2]: %.4g s'
% (time.time() - dt))
### integrate the orbit with the galpy routine, but using the chimera potential
### representing an agama-native underlying potential instead
### (also much slower because of repeated transfer of control between C++ and Python)
dt = time.time()
g_orb_obj.integrate(times1, a_pot_hybrid)
g_orb_a_hybrid = g_orb_obj.getOrbit()
print(
'Time to integrate 1/10th of the orbit in galpy, using agama-hybrid potential [3]: %.4g s'
% (time.time() - dt))
### integrate the orbit with the agama routine, using the galpy-native potential through the chimera
### (note different calling conventions and the use of cartesian coordinates)
dt = time.time()
a_orb_g_hybrid = agama.orbit(potential=g_pot_hybrid,
time=inttime,
trajsize=numsteps,
ic=toCar(ic))[1]
print(
'Time to integrate the orbit in agama, using galpy-hybrid potential [4]: %.4g s'
% (time.time() - dt))
### integrate the orbit in a native agama potential approximation constructed from the galpy potential
dt = time.time()
a_orb_g_approx = agama.orbit(potential=g_pot_approx,
time=inttime,
trajsize=numsteps,
ic=toCar(ic))[1]
print(
'Time to integrate the orbit in agama, using galpy-approx potential [5]: %.4g s'
% (time.time() - dt))
### using both the orbit integration routine and the native potential from agama - much faster
dt = time.time()
a_orb_a_native = agama.orbit(potential=a_pot_native,
time=inttime,
trajsize=numsteps,
ic=toCar(ic))[1]
print(
'Time to integrate the orbit in agama, using agama-native potential [6]: %.4g s'
% (time.time() - dt))
### the same but with the chimera potential representing an agama-native potential
### (should be identical to the above, since in both cases the same underlying C++ object is used)
dt = time.time()
a_orb_a_hybrid = agama.orbit(potential=a_pot_hybrid,
time=inttime,
trajsize=numsteps,
ic=toCar(ic))[1]
print(
'Time to integrate the orbit in agama, using agama-hybrid potential [7]: %.4g s'
% (time.time() - dt))
### compare the differences between the orbits computed in different ways
### (both the potentials and integration routines are not exactly equivalent);
### use only common initial segment (1/10th of the orbit) for comparison
print('Differences between orbits: ' + '[1]-[2]=%g, ' % numpy.max(
numpy.abs(toCar(g_orb_g_native[:len(times1)]) - toCar(g_orb_g_hybrid))
) + '[1]-[3]=%g, ' % numpy.max(
numpy.abs(toCar(g_orb_g_native[:len(times1)]) - toCar(g_orb_a_hybrid)))
+ '[1]-[4]=%g, ' % numpy.max(
numpy.abs(toCar(g_orb_g_native) - a_orb_g_hybrid)[:len(times1)])
+ '[1]-[5]=%g, ' % numpy.max(
numpy.abs(toCar(g_orb_g_native) - a_orb_g_approx)[:len(times1)])
+ '[1]-[6]=%g, ' % numpy.max(
numpy.abs(toCar(g_orb_g_native) - a_orb_a_native)[:len(times1)])
+ '[6]-[4]=%g, ' %
numpy.max(numpy.abs(a_orb_a_native - a_orb_g_hybrid)[:len(times1)]) +
'[6]-[7]=%g' %
numpy.max(numpy.abs(a_orb_a_native - a_orb_a_hybrid)[:len(times1)])
) # should be zero
### convert the orbits to the same galpy coordinate convention
gg_orb = g_orb_g_native # it's already in this convention
ga_orb = g_orb_a_hybrid
ag_orb = toCyl(a_orb_g_hybrid)
aa_orb = toCyl(a_orb_a_native)
### in galpy, this is the only tool that can estimate focal distance,
### but it requires the orbit to be computed first
delta = float(
galpy.actionAngle.estimateDeltaStaeckel(g_pot_hybrid, gg_orb[:, 0],
gg_orb[:, 3]))
print('Focal distance estimated from the entire trajectory: Delta=%.4g' %
delta)
### plot the orbit(s) in R,z plane, along with the prolate spheroidal coordinate grid
plt.figure(figsize=(12, 8))
plt.axes([0.06, 0.56, 0.43, 0.43])
plotCoords(delta, 1.5)
plt.plot(gg_orb[:, 0], gg_orb[:, 3], 'b', label='galpy native') # R,z
plt.plot(aa_orb[:, 0],
aa_orb[:, 3],
'g',
label='agama native',
dashes=[4, 2])
plt.plot(ag_orb[:, 0],
ag_orb[:, 3],
'y',
label='agama using galpy potential',
dashes=[1, 1])
plt.plot(ga_orb[:, 0],
ga_orb[:, 3],
'r',
label='galpy using agama potential')
plt.xlabel("R/8kpc")
plt.ylabel("z/8kpc")
plt.xlim(0, 1.2)
plt.ylim(-1, 1)
plt.legend(loc='lower left', ncol=2)
### create galpy action/angle finder for the given value of Delta
### note: using c=False in the routine below is much slower but apparently more accurate,
### comparable to the agama for the same value of delta
g_actfinder = galpy.actionAngle.actionAngleStaeckel(pot=g_pot_native,
delta=delta,
c=True)
### find the actions for each point of the orbit using galpy action finder
dt = time.time()
g_act = g_actfinder(gg_orb[:, 0],
gg_orb[:, 1],
gg_orb[:, 2],
gg_orb[:, 3],
gg_orb[:, 4],
fixed_quad=True)
print('Time to compute actions in galpy: %.4g s' % (time.time() - dt))
print('Jr = %.6g +- %.4g, Jz = %.6g +- %.4g' % \
(numpy.mean(g_act[0]), numpy.std(g_act[0]), numpy.mean(g_act[2]), numpy.std(g_act[2])))
### use the agama action routine for the same value of Delta as in galpy (explicity specify focal distance):
### the result is almost identical but computed much faster
dt = time.time()
c_act = agama.actions(point=a_orb_a_hybrid,
potential=a_pot_hybrid,
fd=delta)
print(
'Time to compute actions in agama using galpy-estimated focal distance: %.4g s'
% (time.time() - dt))
print('Jr = %.6g +- %.4g, Jz = %.6g +- %.4g' % \
(numpy.mean(c_act[:,0]), numpy.std(c_act[:,0]), numpy.mean(c_act[:,1]), numpy.std(c_act[:,1])))
### use the agama action finder (initialized at the beginning) that automatically determines
### the best value of Delta (same computational cost as the previous one)
dt = time.time()
a_act = a_actfinder(
a_orb_a_hybrid) # use the focal distance estimated by action finder
print(
'Time to compute actions in agama using pre-initialized focal distance: %.4g s'
% (time.time() - dt))
print('Jr = %.6g +- %.4g, Jz = %.6g +- %.4g' % \
(numpy.mean(a_act[:,0]), numpy.std(a_act[:,0]), numpy.mean(a_act[:,1]), numpy.std(a_act[:,1])))
### use the interpolated agama action finder (initialized at the beginning) - less accurate but faster
dt = time.time()
i_act = i_actfinder(a_orb_a_hybrid)
print(
'Time to compute actions in agama with interpolated action finder: %.4g s'
% (time.time() - dt))
print('Jr = %.6g +- %.4g, Jz = %.6g +- %.4g' % \
(numpy.mean(i_act[:,0]), numpy.std(i_act[:,0]), numpy.mean(i_act[:,1]), numpy.std(i_act[:,1])))
### plot Jr vs Jz
plt.axes([0.55, 0.56, 0.43, 0.43])
plt.plot(g_act[0], g_act[2], c='b', label='galpy')
plt.plot(c_act[:, 0],
c_act[:, 1],
c='g',
label=r'agama, $\Delta=%.4f$' % delta,
dashes=[4, 2])
plt.plot(a_act[:, 0], a_act[:, 1], c='r', label=r'agama, $\Delta=$auto')
plt.plot(i_act[:, 0], i_act[:, 1], c='c', label=r'agama, interpolated')
plt.xlabel("$J_r$")
plt.ylabel("$J_z$")
plt.legend(loc='lower left', frameon=False)
### plot Jr(t) and Jz(t)
plt.axes([0.06, 0.06, 0.92, 0.43])
plt.plot(times, g_act[0], c='b', label='galpy')
plt.plot(times, g_act[2], c='b')
plt.plot(times,
c_act[:, 0],
c='g',
label='agama, $\Delta=%.4f$' % delta,
dashes=[4, 2])
plt.plot(times, c_act[:, 1], c='g', dashes=[4, 2])
plt.plot(times, a_act[:, 0], c='r', label='agama, $\Delta=$auto')
plt.plot(times, a_act[:, 1], c='r')
plt.plot(times, i_act[:, 0], c='c', label='agama, interpolated')
plt.plot(times, i_act[:, 1], c='c')
plt.text(0, c_act[0, 0], '$J_r$', fontsize=16)
plt.text(0, c_act[0, 1], '$J_z$', fontsize=16)
plt.xlabel("t")
plt.ylabel("$J_r, J_z$")
plt.legend(loc='center right', ncol=2, frameon=False)
#plt.ylim(0.14,0.25)
plt.xlim(0, 50)
plt.show()
