def getSectionImages(self, onlyFiltered=True):
self.sectionImageList = []
list_to_use = []
if onlyFiltered:
list_to_use = self.filteredMarkers
else:
list_to_use = self.allMarkers
for sds in list_to_use:
import aibs
api = aibs.api()
imageList = api.getSectionImagesForID(sds['id'])
self.sectionImageList += imageList
return self.sectionImageList
def collectRawGenerics(self, DOWNSAMPLE, _dir):
if self.s.remoteSpecimen == True:
print '-> collecting images from remote source'
# download downsampled images
import aibs
reload(aibs)
api = aibs.api()
api.getDSImagesFromListToPath(self.s.getSortedImageList(), _dir, downsample=DOWNSAMPLE)
else:
# print '-> collecting images from local source'
return self.getDSImagesFromLocalToPath(self.s.getSortedImageList(), _dir, downsample=DOWNSAMPLE)
def getSectionImages(self, onlyFiltered=True):
if self.remoteSpecimen:
self.sectionImageList = []
list_to_use = []
if onlyFiltered and len(self.filteredMarkers) > 0:
list_to_use = self.filteredMarkers
else:
list_to_use = self.allMarkers
for sds in list_to_use:
import aibs
api = aibs.api()
imageList = api.getSectionImagesForID(sds['id'])
self.sectionImageList += imageList
return self.sectionImageList
else:
self.sectionImageList = []
list_to_use = []
if onlyFiltered and len(self.filteredMarkers) > 0:
list_to_use = self.filteredMarkers
else:
list_to_use = self.allMarkers
for sds in list_to_use:
imageList = self._getLocalImageList(sds['id'])
#imageList = api.getSectionImagesForID(sds['id'])
self.sectionImageList += imageList
return self.sectionImageList
