def __getitem__(self, *args):
out = super(HaplotypeChunkedArray, self).__getitem__(*args)
if hasattr(out, 'shape') and len(self.shape) == len(out.shape):
# dimensionality preserved
out = _ndarray.HaplotypeArray(out)
return out
def f(block, bmapping):
h = _ndarray.HaplotypeArray(block)
return h.map_alleles(bmapping)
def f(block):
h = _ndarray.HaplotypeArray(block)
return h.to_genotypes(ploidy)
def f(block):
h = _ndarray.HaplotypeArray(block)
return h.count_alleles(max_allele=max_allele)[:, None, :]
def compute(self, **kwargs):
a = super(HaplotypeDaskArray, self).compute(**kwargs)
h = _ndarray.HaplotypeArray(a)
return h