Exemplos de vcf_to_recarray em Python

Exemplo n.º 1

def OpenVCFfileAsArray(fpath):
    VariantsArr = allel.vcf_to_recarray(fpath)
    return VariantsArr

Exemplo n.º 2

import binascii
import sys
import timeit
import os
from Crypto.PublicKey import RSA
from hashlib import sha512
from hashlib import sha256
import hmac
from fastpbkdf2 import pbkdf2_hmac



mt = MerkleTools()
RSAbitsNum = 2048
hash_type = "sha256" 
ra = allel.vcf_to_recarray('../files/NB72462M.vcf')
Iter = int(sys.argv[1])
ResiltFileName = "MHTexperimentResults1IterNov11fast128Iter" + str(Iter)
ExperimentResults = open(ResiltFileName, "w")
RootSigFile = "root_sig"
SaltsFileName = "salts"
TreeName = "mtlevels"
salts = []
lvs = []
for x in ra:
 	lvs.append(str(x))


hash_function = getattr(hashlib, hash_type)

def GenerateMHT(leavess):