def survey_vioscreen(survey_id, consent_info, internal_surveys=[]):
"""Return a formatted text block and URL for the external survey"""
tl = text_locale['human_survey_completed.html']
embedded_text = tl['SURVEY_VIOSCREEN']
url = ("https://vioscreen.com/remotelogin.aspx?Key=%s&RegCode=KLUCB" %
url_escape(encrypt_key(survey_id)))
return embedded_text % url
def survey_vioscreen(survey_id):
"""Return a formatted text block and URL for the external survey"""
tl = text_locale['human_survey_completed.html']
embedded_text = tl['SURVEY_VIOSCREEN']
url = ("https://vioscreen.com/remotelogin.aspx?Key=%s&RegCode=KLUCB" %
url_escape(encrypt_key(survey_id)))
return embedded_text % url
def post(self, participant_name):
text = text_locale['participant_overview.html']
participant_name = participant_name.strip('/') # for nginx
skid = self.current_user
ag_login_id = ag_data.get_user_for_kit(skid)
barcodes = ag_data.getParticipantSamples(ag_login_id, participant_name)
if barcodes:
ebi_submitted = any(ag_data.is_deposited_ebi(b['barcode'])
for b in barcodes)
else:
ebi_submitted = False
# Check if we have to remove the participant
participant_to_remove = self.get_argument("remove", None)
if participant_to_remove and not ebi_submitted:
barcodes = ag_data.getParticipantSamples(
ag_login_id, participant_to_remove)
# Remove all the samples attached to the participant
for bc in barcodes:
ag_data.deleteSample(bc['barcode'], ag_login_id)
# Remove the participant
ag_data.deleteAGParticipantSurvey(
ag_login_id, participant_to_remove)
# Redirect to portal
self.redirect(media_locale['SITEBASE'] + "/authed/portal/")
return
participant_type = self.get_argument('participant_type')
internal_surveys = ag_data.get_participants_surveys(ag_login_id,
participant_name)
vioscreens = []
if internal_surveys is None:
raise HTTPError(404, "Could not retrieve survey details for "
"participant '%s'" % participant_name)
else:
for survey_group, survey_id, survey_name in internal_surveys:
if survey_group == -1:
# Magic number 3 is the vioscreen code for complete survey
status = ag_data.get_vioscreen_status(survey_id)
url = (("https://vioscreen.com/remotelogin.aspx?Key=%s"
"&RegCode=KLUCB") %
url_escape(encrypt_key(survey_id)))
if status is not None and status != 3:
vioscreens.append(text['VIOSCREEN_CONTINUE'] % url)
elif status is not None:
vioscreens.append(text['VIOSCREEN_COMPLETE'])
else:
vioscreens.append(text['VIOSCREEN_START'] % url)
# Get the list of samples for this participant
samples = ag_data.getParticipantSamples(ag_login_id,
participant_name)
self.render('participant_overview.html', skid=skid,
participant_name=participant_name,
internal_surveys=internal_surveys,
participant_type=participant_type, samples=samples,
vioscreens=vioscreens, ebi_submitted=ebi_submitted)
def post(self, participant_name):
text = text_locale['participant_overview.html']
participant_name = participant_name.strip('/') # for nginx
skid = self.current_user
ag_login_id = ag_data.get_user_for_kit(skid)
# Check if we have to remove the participant
participant_to_remove = self.get_argument("remove", None)
if participant_to_remove:
barcodes = ag_data.getParticipantSamples(
ag_login_id, participant_to_remove)
# Remove all the samples attached to the participant
for bc in barcodes:
ag_data.deleteSample(bc['barcode'], ag_login_id)
# Remove the participant
ag_data.deleteAGParticipantSurvey(
ag_login_id, participant_to_remove)
# Redirect to portal
self.redirect(media_locale['SITEBASE'] + "/authed/portal/")
return
participant_type = self.get_argument('participant_type')
vioscreen_status = None
vioscreen_text = ''
survey_id = ag_data.get_survey_id(ag_login_id, participant_name)
if survey_id is None:
raise HTTPError(404, "Could not retrieve survey details for "
"participant '%s'" % participant_name)
else:
vioscreen_status = ag_data.get_vioscreen_status(survey_id)
url = ("https://vioscreen.com/remotelogin.aspx?Key=%s"
"&RegCode=KLUCB" % url_escape(encrypt_key(survey_id)))
# Magic number 3 is the vioscreen code for complete survey
if vioscreen_status is not None and vioscreen_status != 3:
vioscreen_text = text['VIOSCREEN_CONTINUE'] % url
elif vioscreen_status is not None:
vioscreen_text = text['VIOSCREEN_COMPLETE']
else:
vioscreen_text = text['VIOSCREEN_START'] % url
# Get the list of samples for this participant
samples = ag_data.getParticipantSamples(ag_login_id,
participant_name)
self.render('participant_overview.html', skid=skid,
participant_name=participant_name, survey_id=survey_id,
participant_type=participant_type, samples=samples,
vioscreen_text=vioscreen_text)
def post(self, participant_name):
text = text_locale['participant_overview.html']
participant_name = participant_name.strip('/') # for nginx
skid = self.current_user
ag_login_id = ag_data.get_user_for_kit(skid)
barcodes = ag_data.getParticipantSamples(ag_login_id, participant_name)
if barcodes:
ebi_submitted = any(
ag_data.is_deposited_ebi(b['barcode']) for b in barcodes)
else:
ebi_submitted = False
# Check if we have to remove the participant
participant_to_remove = self.get_argument("remove", None)
if participant_to_remove and not ebi_submitted:
barcodes = ag_data.getParticipantSamples(ag_login_id,
participant_to_remove)
# Remove all the samples attached to the participant
for bc in barcodes:
ag_data.deleteSample(bc['barcode'], ag_login_id)
# Remove the participant
ag_data.deleteAGParticipantSurvey(ag_login_id,
participant_to_remove)
# Redirect to portal
self.redirect(media_locale['SITEBASE'] + "/authed/portal/")
return
participant_type = self.get_argument('participant_type')
internal_surveys = ag_data.get_participants_surveys(
ag_login_id, participant_name)
vioscreens = []
if internal_surveys is None:
raise HTTPError(
404, "Could not retrieve survey details for "
"participant '%s'" % participant_name)
else:
for survey_group, survey_id, survey_name in internal_surveys:
if survey_group == -1:
# Magic number 3 is the vioscreen code for complete survey
status = ag_data.get_vioscreen_status(survey_id)
url = (("https://vioscreen.com/remotelogin.aspx?Key=%s"
"&RegCode=KLUCB") %
url_escape(encrypt_key(survey_id)))
if status is not None and status != 3:
vioscreens.append(text['VIOSCREEN_CONTINUE'] % url)
elif status is not None:
vioscreens.append(text['VIOSCREEN_COMPLETE'])
else:
vioscreens.append(text['VIOSCREEN_START'] % url)
# Get the list of samples for this participant
samples = ag_data.getParticipantSamples(ag_login_id, participant_name)
self.render('participant_overview.html',
skid=skid,
participant_name=participant_name,
internal_surveys=internal_surveys,
participant_type=participant_type,
samples=samples,
vioscreens=vioscreens,
ebi_submitted=ebi_submitted)