'''
Created on Mar 15, 2012
.. codeauthor:: jhkwakkel <j.h.kwakkel (at) tudelft (dot) nl>
'''
from analysis import clusterer
from util import ema_logging
from core import ModelEnsemble
from test.scarcity_example import ScarcityModel
if __name__ == "__main__":
ema_logging.log_to_stderr(ema_logging.INFO)
model = ScarcityModel(r'..\..\src\test', "fluCase")
ensemble = ModelEnsemble()
ensemble.set_model_structure(model)
ensemble.parallel = True
results = ensemble.perform_experiments(200)
clusterer.cluster(data=results,
outcome='relative market price',
distance='gonenc',
cMethod='maxclust',
cValue=5,
plotDendrogram=False)
'''
Created on Mar 15, 2012
@author: jhkwakkel
'''
from analysis import clusterer
from expWorkbench import ema_logging
from expWorkbench import ModelEnsemble
from test.scarcity_example import ScarcityModel
if __name__ == "__main__":
ema_logging.log_to_stderr(ema_logging.INFO)
model = ScarcityModel(r'..\..\src\test', "fluCase")
ensemble = ModelEnsemble()
ensemble.set_model_structure(model)
ensemble.parallel = True
results = ensemble.perform_experiments(200)
clusterer.cluster(data=results,
outcome='relative market price',
distance='gonenc',
cMethod='maxclust',
cValue=5,
plotDendrogram=False)
#load the data
data = load_results(r'..\gallery\data\100 flu cases no policy.cPickle')
# specify the number of desired clusters
# note: the meaning of cValue is tied to the value for cMethod
cValue = 5
#perform cluster analysis
dist, clusteraloc, runlog, z = cluster(data=data,
outcome='deceased population region 1',
distance='gonenc',
interClusterDistance='complete',
cMethod = 'maxclust',
cValue = cValue,
plotDendrogram=False,
plotClusters=False,
groupPlot=False,
sisterCount=100,
tHoldCurvature = 0.1,
tHoldSlope = 0.1
)
#the plotting
fig = plt.figure()
#for each cluster
for i in range(1, cValue+1):
#get the data
values = data[1]['deceased population region 1']
values = values[clusteraloc==i]
'''
Created on Sep 8, 2011
@author: gonengyucel
'''
from analysis.clusterer import cluster
from expWorkbench import load_results
from expWorkbench import EMAlogging
EMAlogging.log_to_stderr(EMAlogging.INFO)
data = load_results(r'..\analysis\1000 flu cases.cPickle')
cluster(data=data,
outcome='deceased population region 1',
distance='gonenc',
interClusterDistance='complete',
plotDendrogram=True,
plotClusters=False,
groupPlot=False,
sisterCount=100,
)