def convert_mf1_to_cubereader(self, filenames):
for filename in filenames:
if filename:
print('Reading file: %s'%filename)
print 'Pick a folder to save the hdf5 file'
with open(filename,'rb') as fid:
text_header=fid.read(2048)
print text_header
hdf5_directory = QtGui.QFileDialog.getExistingDirectory()
default_values = default.DefaultValues(filename)
basename = analysis.get_file_basename(filename)
full_basename = 'CubeReader-' + basename
output_filename = os.path.join(hdf5_directory, full_basename) +'.hdf5'
dimension1, dimension2, global_bool = self.get_initial_settings_for_mf1(default_values)
print('Saving file: %s'%output_filename)
self.progress_bar = self.convert_progress_bar(dimension1*dimension2)
self.threadPool.append(generic_thread.GenericThread(self.convert_mf1,
filename,
output_filename,
dimension1,
dimension2,
global_bool))
self.threadPool[len(self.threadPool)-1].start()
else:
print 'No file selected'
def get_output_filename(input_filename):
"""
generate filenames for peak_fit. if filename exists in directory
increment name
"""
hdf5_directory = QtGui.QFileDialog.getExistingDirectory()
basename = analysis.get_file_basename(input_filename)
file_exists = True
count = 0
while file_exists == True:
basename = analysis.get_file_basename(input_filename)
full_basename = 'Peak_Fit%02d'%count + '-' + basename
output_filename = os.path.join(hdf5_directory, full_basename) +'.hdf5'
try:
with open(output_filename): pass
count += 1
except IOError:
file_exists = False
return output_filename
def get_output_filename(input_filename):
"""
generate filenames for peak_fit. if filename exists in directory
increment name
"""
hdf5_directory = QtGui.QFileDialog.getExistingDirectory()
basename = analysis.get_file_basename(input_filename)
file_exists = True
count = 0
while file_exists == True:
basename = analysis.get_file_basename(input_filename)
full_basename = 'Peak_Fit%02d' % count + '-' + basename
output_filename = os.path.join(hdf5_directory, full_basename) + '.hdf5'
try:
with open(output_filename):
pass
count += 1
except IOError:
file_exists = False
return output_filename
def __init__(self, spectrum_holder, parent=None):
#super(SpectrumViewer, self).__init__()
QtGui.QMainWindow.__init__(self, parent)
self.filename = spectrum_holder.filename
basename = analysis.get_file_basename(spectrum_holder.filename)
self.setWindowTitle('Spectrum Holder for %s'%basename)
self.resize(600,300)
self.spectrum_holder = spectrum_holder
spectrum_box = spectrum_holder.spectrum_box
self.cube_mutex = QtCore.QMutex()
self.inputs()
self.textbox_spectrum_box.setText(spectrum_box)
def __init__(self, spectrum_holder, parent=None):
#super(SpectrumViewer, self).__init__()
QtGui.QMainWindow.__init__(self, parent)
self.filename = spectrum_holder.filename
basename = analysis.get_file_basename(spectrum_holder.filename)
self.setWindowTitle('Spectrum Holder for %s' % basename)
self.resize(600, 300)
self.spectrum_holder = spectrum_holder
spectrum_box = spectrum_holder.spectrum_box
self.cube_mutex = QtCore.QMutex()
self.inputs()
self.textbox_spectrum_box.setText(spectrum_box)
def __init__(self,filename, parent=None):
QtGui.QWidget.__init__(self, parent)
self.filename = filename
print self.filename
self.cube = h_cubereader.load_data(filename)
self.basename = analysis.get_file_basename(self.filename)
self.data = self.cube[0]
self.dataview = self.cube[1]
self.convert_mutex = QtCore.QMutex()
self.bool_press = False
self.make_spectrum_holder()
self.make_frame()
self.connect_buttons()
def __init__(self, filename, parent=None):
QtGui.QWidget.__init__(self, parent)
self.filename = filename
print self.filename
self.cube = h_cubereader.load_data(filename)
self.basename = analysis.get_file_basename(self.filename)
self.data = self.cube[0]
self.dataview = self.cube[1]
self.convert_mutex = QtCore.QMutex()
self.bool_press = False
self.make_spectrum_holder()
self.make_frame()
self.connect_buttons()
def get_output_filename(self, input_file):
hdf5_directory = QtGui.QFileDialog.getExistingDirectory()
file_exists = True
count = 0
while file_exists == True:
basename = analysis.get_file_basename(input_file)
full_basename = 'new%02d'%count + '-' + basename
output_filename = os.path.join(hdf5_directory, full_basename) +'.hdf5'
try:
with open(output_filename): pass
count += 1
except IOError:
file_exists = False
return output_filename
def open_fit(self):
"""opens a cube fit in a new tab"""
dialog = QtGui.QFileDialog(self.ui)
dialog.setFileMode(QtGui.QFileDialog.ExistingFiles)
dialog.setNameFilter('HDF5 (*.hdf5)')
if dialog.exec_():
filenames = dialog.selectedFiles()
for filename in filenames:
if filename:
basename = analysis.get_file_basename(filename)
newtab = open_cube_fit.CubeFit(filename)
newtab.setWindowTitle('%s' %basename)
self.ui.tabWidget.addTab(newtab, '%s' %basename)
else:
print 'No file selected'
def open_fit(self):
"""opens a cube fit in a new tab"""
dialog = QtGui.QFileDialog(self.ui)
dialog.setFileMode(QtGui.QFileDialog.ExistingFiles)
dialog.setNameFilter('HDF5 (*.hdf5)')
if dialog.exec_():
filenames = dialog.selectedFiles()
for filename in filenames:
if filename:
basename = analysis.get_file_basename(filename)
newtab = open_cube_fit.CubeFit(filename)
newtab.setWindowTitle('%s' % basename)
self.ui.tabWidget.addTab(newtab, '%s' % basename)
else:
print 'No file selected'
