def set_mother_arvs(entry):
"""
Look up and set ARV's for mom.
"""
schemafile = './apr/registry-schema.json'
with open(schemafile) as f:
schema = json.loads(f.read())
arvs = schema['faces-mapping']['arvs']
arvset = []
begin_date = entry.date_of_outcome - datetime.timedelta(360*2)
encobs = entry.motherobs.filter(voided=0,
encounter_datetime__gte=begin_date,
encounter_datetime__lte=entry.date_of_outcome).order_by('encounter_datetime')
course = 1
cur_arv = None
for encob in encobs:
if encob.concept_id == 1571:
#arvset.add(encob.value_coded)
if encob.value_coded != cur_arv:
cur_arv = encob.value_coded
arvt = ArvTherapy()
arvt.registry_entry = entry
arvt.course = course
arvt.medcode = arvs[str(cur_arv)]['medcode']
arvt.date_began = encob.encounter_datetime.date()
arvt.save(using=APR_DB)
print 'c: ', course, ' medcode: ', arvs[str(cur_arv)]['medcode'], ' datestarted: ', encob.encounter_datetime
course += 1
else:
pass
print encob.encounter_datetime, encob.value_coded
def add_mother_arvs(entry, save=False):
schemafile = "./apr/registry-schema.json"
with open(schemafile) as f:
schema = json.loads(f.read())
arvs = schema["faces-mapping"]["arvs"]
begin_date = entry.date_of_outcome - datetime.timedelta(540)
preg_encobs = (
Obs.objects.using(FACES_OPENMRS_DB)
.filter(
person_id=entry.mother_id, voided=0, obs_datetime__gte=begin_date, obs_datetime__lte=entry.date_of_outcome
)
.order_by("obs_datetime")
)
# arvs
course = 1
cur_arv = None
arvs_obs = preg_encobs.filter(concept_id=1571)
if arvs_obs.count() == 0:
entry.voided_reason = RegistryEntry.VOIDED_NO_ARV_HISTORY
entry.voided = True
if save:
entry.save()
for arv in arvs_obs:
if arv.value_coded != cur_arv:
cur_arv = arv.value_coded_id
arvt = ArvTherapy()
arvt.registry_entry = entry
arvt.course = course
# print "The cur_arv is: ", cur_arv, " ", str(cur_arv)
arvt.medcode = arvs[str(cur_arv)]["medcode"]
arvt.date_began = arv.obs_datetime
if save:
arvt.save(using=APR_DB)
# print 'c: ', course, ' medcode: ', arvs[str(cur_arv)]['medcode'], ' datestarted: ', arv.obs_datetime
course += 1
else:
pass
def set_mother_arvs(entry, save_entries=False):
"""
Look up and set ARV's for mom. Returns a list of new ARV's.
"""
schemafile = './apr/registry-schema.json'
with open(schemafile) as f:
schema = json.loads(f.read())
arvs = schema['ampath-mapping']['arvs']
arvset = []
begin_date = entry.date_of_outcome - datetime.timedelta(360*2)
log_data(entry, "Beginning date for searching ARVs %s" % (begin_date,), 'arvs', 1088)
encobs = Obs.objects.using(AMRS_DB).filter(voided=0,
obs_datetime__gte=begin_date,
obs_datetime__lte=entry.date_of_outcome,
person_id=entry.mother_id).order_by('obs_datetime')
course = 1
cur_arv = None
for encob in encobs:
if encob.concept_id == 1088:
if encob.value_coded_id != cur_arv:
cur_arv = encob.value_coded_id
arvt = ArvTherapy()
arvt.registry_entry = entry
arvt.course = course
arvt.medcode = arvs[str(cur_arv)]['medcode']
arvt.date_began = encob.obs_datetime.date()
log_data(entry, "Using ARV %s %s" % (encob.concept_id, encob.obs_datetime,), 'arv', 1088)
if save_entries:
arvt.save(using=APR_DB)
arvset.append(arvt)
course += 1
else:
log_data(entry, "Skipping cur ARV %s %s" % (encob.concept_id, encob.obs_datetime,), 'arv', 1088)
pass
# Go through and adjust the end dates as well as the ongoing flag
for idx, arvt in enumerate(arvset):
if len(arvset) == 1:
arvt.ongoing = 1
elif idx == 0:
arvt.ongoing = 0
arvt.date_ended = arvset[idx+1].date_began
elif idx == (len(arvset)-1):
arvt.ongoing = 1
else:
arvt.ongoing = 0
arvt.date_ended = arvset[idx+1].date_began
print("Saving the updated status...")
arvt.save(using=APR_DB)
return arvset