# Run MCMC
result.sample(model,
progress_bar=progress_bar,
**sample_params)
def cl(PROJECTS=sorted(PB_PROJECTS.keys()),
MODELS=('gpa333',),
FREQS=(4.0, 8.0, 0.5, 1.0, 2.0, 16.0, 32.0, 40.0), # angular frequencies (rad/s)
log_dir='~'):
"""Generates command lines to launch the script with different parameters."""
for project in PROJECTS:
pbproject = PB_PROJECTS[project]
for model, af, genotype in product(MODELS, FREQS, pbproject.genotypes()):
expid = '%s__%s__%s__%g' % (project, model, genotype, af)
print('python2 -u thebas/sinefitting/samplers.py sample '
'--pbproject %s '
'--freq %g '
'--genotype-id %s '
'--model-id %s '
'&>%s/%s.log' %
(project, af, genotype, model, log_dir, expid))
if __name__ == '__main__':
import argh
parser = argh.ArghParser()
parser.add_commands([cl, sample])
parser.dispatch()
def main():
parser = argh.ArghParser()
parser.prog = 'samlkeygen'
parser.add_commands(
[authenticate, list_profiles, select_profile, run_command, version])
parser.dispatch()
