def pipeline_pubmed(self):
xylose_article = Article(self._article, iso_format='iso 639-2')
ppl = plumber.Pipeline(export_pubmed.SetupArticleSetPipe(),
export_pubmed.XMLArticlePipe(),
export_pubmed.XMLJournalPipe(),
export_pubmed.XMLPublisherNamePipe(),
export_pubmed.XMLJournalTitlePipe(),
export_pubmed.XMLISSNPipe(),
export_pubmed.XMLVolumePipe(),
export_pubmed.XMLIssuePipe(),
export_pubmed.XMLPubDatePipe(),
export_pubmed.XMLReplacesPipe(),
export_pubmed.XMLArticleTitlePipe(),
export_pubmed.XMLFirstPagePipe(),
export_pubmed.XMLLastPagePipe(),
export_pubmed.XMLElocationIDPipe(),
export_pubmed.XMLLanguagePipe(),
export_pubmed.XMLAuthorListPipe(),
export_pubmed.XMLPublicationTypePipe(),
export_pubmed.XMLArticleIDListPipe(),
export_pubmed.XMLHistoryPipe(),
export_pubmed.XMLAbstractPipe(),
export_pubmed.XMLClosePipe())
transformed_data = ppl.run(xylose_article, rewrap=True)
return next(transformed_data)
def test_xmlissue_pipe(self):
pxml = ET.Element('ArticleSet')
pxml.append(ET.Element('Article'))
article = pxml.find('Article')
article.append(ET.Element('Journal'))
data = [self._article_meta, pxml]
xmlarticle = export_pubmed.XMLIssuePipe()
raw, xml = xmlarticle.transform(data)
issue = xml.find('./Article/Journal/Issue').text
self.assertEqual(u'4', issue)
def test_issue_element(self):
_raw_json = {
'issue': {
'issue': {
'v32': [{
'_': '10'
}]
},
},
'article': {
'v32': [{
'_': '10'
}]
},
}
_article = Article(_raw_json)
data = [_article, self.xml]
_xml = export_pubmed.XMLIssuePipe()
raw, xml = _xml.transform(data)
self.assertEqual(xml.findtext('.//Journal/Issue'), '10')
def test_aop_element(self):
_raw_json = {
'issue': {
'issue': {
'v32': [{
'_': 'ahead'
}]
},
},
'article': {
'v32': [{
'_': 'ahead'
}]
},
}
_article = Article(_raw_json)
data = [_article, self.xml]
_xml = export_pubmed.XMLIssuePipe()
raw, xml = _xml.transform(data)
self.assertIsNone(xml.find('.//Journal/Volume'))
self.assertIsNone(xml.find('.//Journal/Issue'))