def initialize_scan(self):
if self.splitant:
if not is_ms(self.infile):
msg = 'input data must be in MS format'
raise Exception, msg
import datetime
dt = datetime.datetime.now()
self.temp_prefix = "temp-sdsave" + dt.strftime("%Y%m%d%H%M%S")
self.split_infiles = sd.splitant(filename=self.infile,
outprefix=self.temp_prefix,
overwrite=self.overwrite,
getpt=self.getpt)
self.scans = []
self.antenna_names = []
for split_infile in self.split_infiles:
work_scan = sd.scantable(split_infile, average=False)
# scantable selection
#work_scan.set_selection(self.get_selector_by_list())
work_scan.set_selection(self.get_selector(work_scan))
self.scans.append(work_scan)
# retrieve antenna names
self.antenna_names.append(split_infile.split('.')[1])
else:
scan = sd.scantable(self.infile,
average=False,
antenna=self.antenna,
getpt=self.getpt)
# scantable selection
scan.set_selection(self.get_selector(scan))
#self.scan.set_selection(self.get_selector_by_list())
self.scan = scan
def initialize_scan(self):
if self.splitant:
if not is_ms(self.infile):
msg = 'input data must be in MS format'
raise Exception, msg
import datetime
dt = datetime.datetime.now()
self.temp_prefix = "temp-sdsave" + dt.strftime("%Y%m%d%H%M%S")
self.split_infiles = sd.splitant(filename=self.infile,
outprefix=self.temp_prefix,
overwrite=self.overwrite,
getpt=self.getpt)
self.scans = []
self.antenna_names = []
for split_infile in self.split_infiles:
work_scan = sd.scantable(split_infile, average=False)
# scantable selection
#work_scan.set_selection(self.get_selector_by_list())
work_scan.set_selection(self.get_selector(work_scan))
self.scans.append(work_scan)
# retrieve antenna names
self.antenna_names.append(split_infile.split('.')[1])
else:
scan = sd.scantable(self.infile,
average=False,
antenna=self.antenna,
getpt=self.getpt)
# scantable selection
scan.set_selection(self.get_selector(scan))
#self.scan.set_selection(self.get_selector_by_list())
self.scan = scan
def splitant(filename, outprefix='',overwrite=False, getpt=True):
"""
Split Measurement set by antenna name, save data as a scantables,
and return a list of filename. Note that frequency reference frame
is imported as it is in Measurement set.
Notice this method can only be available from CASA.
Prameter
filename: the name of Measurement set to be read.
outprefix: the prefix of output scantable name.
the names of output scantable will be
outprefix.antenna1, outprefix.antenna2, ....
If not specified, outprefix = filename is assumed.
overwrite If the file should be overwritten if it exists.
The default False is to return with warning
without writing the output. USE WITH CARE.
getpt Whether to import direction from MS/POINTING
table or not. Default is True (import direction).
"""
# Import the table toolkit from CASA
from taskinit import gentools
from asap.scantable import is_ms
tb = gentools(['tb'])[0]
# Check the input filename
if isinstance(filename, str):
import os.path
filename = os.path.expandvars(filename)
filename = os.path.expanduser(filename)
if not os.path.exists(filename):
s = "File '%s' not found." % (filename)
raise IOError(s)
# check if input file is MS
if not is_ms(filename):
s = "File '%s' is not a Measurement set." % (filename)
raise IOError(s)
else:
s = "The filename should be string. "
raise TypeError(s)
# Check out put file name
outname=''
if len(outprefix) > 0: prefix=outprefix+'.'
else:
prefix=filename.rstrip('/')
# Now do the actual splitting.
outfiles=[]
tb.open(tablename=filename,nomodify=True)
ant1=tb.getcol('ANTENNA1',0,-1,1)
anttab=tb.getkeyword('ANTENNA').lstrip('Table: ')
tb.close()
tb.open(tablename=anttab,nomodify=True)
nant=tb.nrows()
antnames=tb.getcol('NAME',0,nant,1)
tb.close()
for antid in set(ant1):
scan=scantable(filename,average=False,antenna=int(antid),getpt=getpt)
outname=prefix+antnames[antid]+'.asap'
scan.save(outname,format='ASAP',overwrite=overwrite)
del scan
outfiles.append(outname)
return outfiles
def __get_outform(self):
if is_scantable(self.infile):
outform = 'ASAP'
elif is_ms(infile):
outform = 'MS2'
else:
outform = 'SDFITS'
return outform
def __get_outform(self):
if is_scantable(self.infile):
outform = 'ASAP'
elif is_ms(infile):
outform = 'MS2'
else:
outform = 'SDFITS'
return outform
def parameter_check(self):
# by default, the task overwrite infile
if len(self.outfile) == 0:
self.project = self.infile
else:
self.project = self.outfile
sdutil.assert_outfile_canoverwrite_or_nonexistent(
self.project, self.outform, self.overwrite)
#check the format of the infile
filename = sdutil.get_abspath(self.infile)
if isinstance(self.infile, str):
if is_scantable(filename):
informat = 'ASAP'
elif is_ms(filename):
informat = 'MS2'
else:
informat = 'SDFITS'
else:
informat = 'UNDEFINED'
# Check the formats of infile and outfile are identical when overwrite=True.
# (CAS-3096). If not, print warning message and exit.
outformat = self.outform.upper()
if (outformat == 'MS'): outformat = 'MS2'
if self.overwrite and os.path.exists(self.project) \
and (sdutil.get_abspath(self.project) == sdutil.get_abspath(self.infile)) \
and (outformat != informat):
msg = "The input and output data format must be identical when "
msg += "their names are identical and overwrite=True. "
msg += "%s and %s given for input and output, respectively." % (
informat, outformat)
raise Exception, msg
# check restfreq
self.rfset = (self.restfreq != '') and (self.restfreq != [])
self.restore = self.rfset
if self.mode.lower()[0] not in self.valid_modes:
raise Exception, "Invalide mode, '%s'" % self.mode
# check whether any flag operation is done or not
self.anyflag = False
def parameter_check(self):
# by default, the task overwrite infile
if len(self.outfile)==0:
self.project = self.infile
else:
self.project = self.outfile
sdutil.assert_outfile_canoverwrite_or_nonexistent(self.project,
self.outform,
self.overwrite)
#check the format of the infile
filename = sdutil.get_abspath(self.infile)
if isinstance(self.infile, str):
if is_scantable(filename):
informat = 'ASAP'
elif is_ms(filename):
informat = 'MS2'
else:
informat = 'SDFITS'
else:
informat = 'UNDEFINED'
# Check the formats of infile and outfile are identical when overwrite=True.
# (CAS-3096). If not, print warning message and exit.
outformat = self.outform.upper()
if (outformat == 'MS'): outformat = 'MS2'
if self.overwrite and os.path.exists(self.project) \
and (sdutil.get_abspath(self.project) == sdutil.get_abspath(self.infile)) \
and (outformat != informat):
msg = "The input and output data format must be identical when "
msg += "their names are identical and overwrite=True. "
msg += "%s and %s given for input and output, respectively." % (informat, outformat)
raise Exception, msg
# check restfreq
self.rfset = (self.restfreq != '') and (self.restfreq != [])
self.restore = self.rfset
if self.mode.lower()[0] not in self.valid_modes:
raise Exception, "Invalide mode, '%s'" % self.mode
# check whether any flag operation is done or not
self.anyflag = False
def splitant(filename, outprefix='', overwrite=False, getpt=True):
"""
Split Measurement set by antenna name, save data as a scantables,
and return a list of filename. Note that frequency reference frame
is imported as it is in Measurement set.
Notice this method can only be available from CASA.
Prameter
filename: the name of Measurement set to be read.
outprefix: the prefix of output scantable name.
the names of output scantable will be
outprefix.antenna1, outprefix.antenna2, ....
If not specified, outprefix = filename is assumed.
overwrite If the file should be overwritten if it exists.
The default False is to return with warning
without writing the output. USE WITH CARE.
getpt Whether to import direction from MS/POINTING
table or not. Default is True (import direction).
"""
# Import the table toolkit from CASA
from taskinit import gentools
from asap.scantable import is_ms
tb = gentools(['tb'])[0]
# Check the input filename
if isinstance(filename, str):
import os.path
filename = os.path.expandvars(filename)
filename = os.path.expanduser(filename)
if not os.path.exists(filename):
s = "File '%s' not found." % (filename)
raise IOError(s)
# check if input file is MS
if not is_ms(filename):
s = "File '%s' is not a Measurement set." % (filename)
raise IOError(s)
else:
s = "The filename should be string. "
raise TypeError(s)
# Check out put file name
outname = ''
if len(outprefix) > 0: prefix = outprefix + '.'
else:
prefix = filename.rstrip('/')
# Now do the actual splitting.
outfiles = []
tb.open(tablename=filename, nomodify=True)
ant1 = tb.getcol('ANTENNA1', 0, -1, 1)
anttab = tb.getkeyword('ANTENNA').lstrip('Table: ')
tb.close()
tb.open(tablename=anttab, nomodify=True)
nant = tb.nrows()
antnames = tb.getcol('NAME', 0, nant, 1)
tb.close()
for antid in set(ant1):
scan = scantable(filename,
average=False,
antenna=int(antid),
getpt=getpt)
outname = prefix + antnames[antid] + '.asap'
scan.save(outname, format='ASAP', overwrite=overwrite)
del scan
outfiles.append(outname)
return outfiles