Exemplo n.º 1
0
    def read(self, label=None):
        """Read results from VASP output files.
        Files which are read: OUTCAR, CONTCAR and vasprun.xml
        Raises ReadError if they are not found"""
        if label is None:
            label = self.label
        Calculator.read(self, label)

        # If we restart, self.parameters isn't initialized
        if self.parameters is None:
            self.parameters = self.get_default_parameters()

        # Check for existence of the necessary output files
        for f in ['OUTCAR', 'CONTCAR', 'vasprun.xml']:
            file = self._indir(f)
            if not file.is_file():
                raise calculator.ReadError(
                    'VASP outputfile {} was not found'.format(file))

        # Build sorting and resorting lists
        self.read_sort()

        # Read atoms
        self.atoms = self.read_atoms()

        # Read parameters
        self.read_incar(filename=self._indir('INCAR'))
        self.read_kpoints(filename=self._indir('KPOINTS'))
        self.read_potcar(filename=self._indir('POTCAR'))

        # Read the results from the calculation
        self.read_results()
Exemplo n.º 2
0
    def _read_xml(self) -> SinglePointDFTCalculator:
        """Read vasprun.xml, and return the last calculator object.
        Returns calculator from the xml file.
        Raises a ReadError if the reader is not able to construct a calculator.
        """
        file = self._indir('vasprun.xml')
        incomplete_msg = (
            f'The file "{file}" is incomplete, and no DFT data was available. '
            'This is likely due to an incomplete calculation.')
        try:
            _xml_atoms = read(file, index=-1, format='vasp-xml')
            # Silence mypy, we should only ever get a single atoms object
            assert isinstance(_xml_atoms, ase.Atoms)
        except ElementTree.ParseError as exc:
            raise calculator.ReadError(incomplete_msg) from exc

        if _xml_atoms is None or _xml_atoms.calc is None:
            raise calculator.ReadError(incomplete_msg)

        self._xml_calc = _xml_atoms.calc
        return self._xml_calc