Exemplos de alleles_to_ambiguity em Python

Exemplo n.º 1

Arquivo: test_assembly.py Projeto: mypandos/viral-ngs

 def test_non_failure(self):
     ''' Make sure that alleles_to_ambiguity runs without errors for every possible
         combination of inputs.  Check that the output is one-character long and uppercase.
     '''
     bases = ('A', 'C', 'T', 'G')
     for i in range(1, 5):
         for alleles in itertools.permutations(bases, i):
             out = assembly.alleles_to_ambiguity(alleles)
             self.assertEqual(1, len(out))
             self.assertEqual(out, out.upper())

Exemplo n.º 2

Arquivo: test_assembly.py Projeto: pvanheus/viral-ngs

 def test_non_failure(self):
     ''' Make sure that alleles_to_ambiguity runs without errors for every possible
         combination of inputs.  Check that the output is one-character long and uppercase.
     '''
     bases = ('A', 'C', 'T', 'G')
     for i in range(1, 5):
         for alleles in itertools.permutations(bases, i):
             out = assembly.alleles_to_ambiguity(alleles)
             self.assertEqual(1, len(out))
             self.assertEqual(out, out.upper())