def __init__(self, mode="max", prescale=1):
devices = audiere.get_devices()
if "oss" in devices:
self.device = audiere.open_device("oss")
elif "alsa" in devices:
self.device = audiere.open_device("alsa")
else:
raise RuntimeError("no suitable audio device found!")
self.mode = mode
self.channels = numpy.zeros((CRATES, SLOTS, CHANNELS), dtype=numpy.float32)
self.prescale = numpy.ones_like(self.channels) * prescale
self.speakers = numpy.empty_like(self.channels, dtype=object)
self.speakers[:, :, :] = VRateSpeaker(self.channels, prescale)
def __init__(self, mode='max', prescale=1):
devices = audiere.get_devices()
if 'oss' in devices:
self.device = audiere.open_device('oss')
elif 'alsa' in devices:
self.device = audiere.open_device('alsa')
else:
raise RuntimeError('no suitable audio device found!')
self.mode = mode
self.channels = numpy.zeros((CRATES, SLOTS, CHANNELS),
dtype=numpy.float32)
self.prescale = numpy.ones_like(self.channels) * prescale
self.speakers = numpy.empty_like(self.channels, dtype=object)
self.speakers[:, :, :] = VRateSpeaker(self.channels, prescale)
def init(self):
super(AuditoryOddball,self).init()
self.DIR_DEV = 'C:/stim_test/dev'
self.DIR_STD = 'C:/stim_test/std'
self.stimuli = 'predefined'
self.nStim = 15
self.au = audiere.open_device()
self.dev_perc = 0.3
def init(self):
super(AuditoryOddball, self).init()
self.DIR_DEV = 'C:/stim_test/dev'
self.DIR_STD = 'C:/stim_test/std'
self.stimuli = 'predefined'
self.nStim = 15
self.au = audiere.open_device()
self.dev_perc = 0.3
def __init__(self, playlistfile="playlist.txt"):
# Open default audio device
self.dev = audiere.open_device()
# Load playlist
#playlistf = open(playlistfile, 'r')
#self.playlist = [song for song in playlistf.read().split('\n')]
#playlistf.close()
self.songStartingTime = 0
self.songDuration = 0
def playOne(self,buff,fs,pan=0): '''Plays a sound buffer with blocking, matlab-style ''' import audiere from time import sleep d = audiere.open_device() s = d.open_array(buff,fs) s.pan = pan s.play() while s.playing: sleep(.01)
def play(self,buffs,fs,pan=0): '''Plays a sound buffer with blocking, matlab-style ''' import audiere from time import sleep d = audiere.open_device() sons = [d.open_array(buff,fs) for buff in buffs] for son in sons: son.play() while son.playing: sleep(0.01)
def playOne(self,buff,fs,pan=0):
"""
Joue le son correspondant au signal "buff",
à la fréquence d'échantillonnage "fs".
"""
import audiere
from time import sleep
print audiere.get_devices()
d = audiere.open_device()
s = d.open_array(buff,fs)
s.pan = pan
s.play()
while s.playing:
sleep(.01)
def __init__(self, parent, id, title):
wx.Frame.__init__(self, parent, id, title, wx.DefaultPosition, size=wx.DisplaySize())
self.device = audiere.open_device()
self._soundgen = self.device.create_tone
self.tone = self.device.create_tone(250)
self._pan = 0
self.tone.pan = self._pan
self._gen_toggle = False
panel = wx.Panel(self,-1)
panel.Bind(wx.EVT_KEY_DOWN, self.OnKeyDown)
panel.Bind(wx.EVT_KEY_UP, self.OnKeyUp)
panel.SetFocus()
self.Centre()
self.Show(True)
def play(self,buffs,fs,pan=0):
"""
Joue successivement les sons correspondants aux signaux
stockés dans la matrice "buffs",
à la fréquence d'échantillonnage "fs".
"""
import audiere
from time import sleep
print audiere.get_devices()
d = audiere.open_device()
sons = [d.open_array(buff,fs) for buff in buffs]
for son in sons:
son.play()
while son.playing:
sleep(0.01)
def __init__(self):
print("INIT")
self.playlist = []
self.device = audiere.open_device()
print()
def __init__(self):
self.intervals = []
self.intervalTones = []
self.tones = {}
self.notes = {
"F8": 5587.65,
"E8": 5274.04,
"Ds8": 4978.03,
"Eb8": 4978.03,
"D8": 4698.64,
"Cs8": 4434.92,
"Db8": 4434.92,
"C8": 4186.01,
"B7": 3951.07,
"As7": 3729.31,
"Bb7": 3729.31,
"A7": 3520,
"Gs7": 3322.44,
"Ab7": 3322.44,
"G7": 3135.96,
"Fs7": 2959.96,
"Gb7": 2959.96,
"F7": 2793.83,
"E7": 2637.02,
"Ds7": 2489.02,
"Eb7": 2489.02,
"D7": 2349.32,
"Cs7": 2217.46,
"Db7": 2217.46,
"C7": 2093,
"B6": 1975.53,
"As6": 1864.66,
"Bb6": 1864.66,
"A6": 1760,
"Gs6": 1661.22,
"Ab6": 1661.22,
"G6": 1567.98,
"Fs6": 1479.98,
"Gb6": 1479.98,
"F6": 1396.91,
"E6": 1318.51,
"Ds6": 1244.51,
"Eb6": 1244.51,
"D6": 1174.66,
"Cs6": 1108.73,
"Db6": 1108.73,
"C6": 1046.5,
"B5": 987.767,
"As5": 932.328,
"Bb5": 932.328,
"A5": 880,
"Gs5": 830.609,
"Ab5": 830.609,
"G5": 783.991,
"Fs5": 739.989,
"Gb5": 739.989,
"F5": 698.456,
"E5": 659.255,
"Ds5": 622.254,
"Eb5": 622.254,
"D5": 587.33,
"Cs5": 554.365,
"Db5": 554.365,
"C5": 523.251,
"B4": 493.883,
"As4": 466.164,
"Bb4": 466.164,
"A4": 440,
"Gs4": 415.305,
"Ab4": 415.305,
"G4": 391.995,
"Fs4": 369.994,
"Gb4": 369.994,
"F4": 349.228,
"E4": 329.628,
"Ds4": 311.127,
"Eb4": 311.127,
"D4": 293.665,
"Cs4": 277.183,
"Db4": 277.183,
"C4": 261.626,
"B3": 246.942,
"As3": 233.082,
"Bb3": 233.082,
"A3": 220,
"Gs3": 207.652,
"Ab3": 207.652,
"G3": 195.998,
"Fs3": 184.997,
"Gb3": 184.997,
"F3": 174.614,
"E3": 164.814,
"Ds3": 155.563,
"Eb3": 155.563,
"D3": 146.832,
"Cs3": 138.591,
"Db3": 138.591,
"C3": 130.813,
"B2": 123.471,
"As2": 116.541,
"Bb2": 116.541,
"A2": 110,
"Gs2": 103.826,
"Ab2": 103.826,
"G2": 97.9989,
"Fs2": 92.4986,
"Gb2": 92.4986,
"F2": 87.3071,
"E2": 82.4069,
"Ds2": 77.7817,
"Eb2": 77.7817,
"D2": 73.4162,
"Cs2": 69.2957,
"Db2": 69.2957,
"C2": 65.4064,
"B1": 61.7354,
"As1": 58.2705,
"Bb1": 58.2705,
"A1": 55,
"Gs1": 51.9131,
"Ab1": 51.9131,
"G1": 48.9994,
"Fs1": 46.2493,
"Gb1": 46.2493,
"F1": 43.6535,
"E1": 41.2034,
"Ds1": 38.8909,
"Eb1": 38.8909,
"D1": 36.7081,
"Cs1": 34.6478,
"Db1": 34.6478,
"C1": 32.7032,
"B0": 30.8677,
"As0": 29.1352,
"Bb0": 29.1352,
"A0": 27.5,
"Gs0": 25.9565,
"Ab0": 25.9565,
"G0": 24.4997,
"Fs0": 23.1247,
"Gb0": 23.1247,
"F0": 21.8268,
"E0": 20.6017,
"Ds0": 19.4454,
"Eb0": 19.4454,
"D0": 18.354,
"Cs0": 17.3239,
"Db0": 17.3239,
"C0": 16.3516
}
d = audiere.open_device()
global tempo
tempo = 2.40
print("Initializing Tones...")
for key in self.notes:
self.tones[key] = d.create_tone(self.notes[key])
usedList = []
for key in self.notes:
flag = False
for i in usedList:
if i == self.notes[key]:
flag = True
if not flag:
self.intervals.append(self.notes[key])
self.intervalTones.append(d.create_tone(self.notes[key]))
usedList.append(self.notes[key])
self.intervals = sorted(self.intervals)
print("Done")
def run(self):
"This sequence is performed according to the available\
time to do it, because the main thread is used by gtk.main()"
# ======================
# |1| HCI Initialization
# ======================
## -- default variables
codes, distractors, source_id, distractor, repeats = ["None"], [], 0, None, 0
## -- default attributes
self.submenu, self.HOME, self.targets, self.current_subutton, self.current_len, self.video_len, self.ready, self.repeat, self.PLAY = (
False,
True,
[None],
"unknown_task",
"unknown_len",
0,
False,
0,
False,
)
## -- starting a device to play sounds by means of the 'audiere' library
device = audiere.open_device()
## -- loading the cue-sounds
beep = device.open_file(beep_loc)
correct = device.open_file(correct_loc)
wrong = device.open_file(wrong_loc)
click = device.open_file(click_loc)
## -- loading the distractor-sounds
# for track in distractor_locs: distractors.append(device.open_file(track))
## -- intro report
HCI_Presentation()
## -- waiting a client request (i.e., BCI System Connection)
print "Waiting for connection . . ."
BCICliSock, addr = HCISerSock.accept()
print ". . . connected from:", addr
# ==================================================================
# |2| Infinite loop to not lose the control thread (OnLine Paradigm)
# ==================================================================
while not self.quit:
# (a) +++++ Receiving an instruction from BCI client +++++
instruction = BCICliSock.recv(BUFSIZ)
if not instruction:
break
print "The received instruction is:", instruction
# (b) +++++ Decoding the received instruction +++++
TrigNum = instruction.split("*")[0]
instruction = instruction.split("*")[-1]
command = instruction.split("_")[0]
target = instruction.split("_")[-1]
# (c) +++++ Reset of Variables +++++
code, self.GUI_VE = codes[0], ""
# (d) +++++ Calling the appropiated method according to the TCP-message +++++
# --> Start saving continuos eeg data (PauseOff) or
# Pause saving continous eeg data (PauseOn)
if command.isdigit():
time.sleep(1)
ParallelPort(TrigNum, 0)
time.sleep(1)
# --> Type Of System: Tutorial_MI or Tutorial_CMD
elif command == "Tutorial":
## - variable declaration
UT_status, sys_type, trigger = True, target, TrigNum
## - configuration of the Tutorial_Command System
if target == "CMD":
self.submenu, self.HOME = False, True
gobject.idle_add(self.tutorial.UT_CMDSysConfig)
## - trigger delivery
ParallelPort(trigger, 0)
# --> Type Of System: Training_GUI & Testing_GUI
elif any([command == "Training", command == "Testing"]):
## - switch to first tab & interface~reset
self.ready = False
gobject.idle_add(self.GUI_ResetTabs, self.submenu)
while not self.ready:
None
## - variable reset
UT_status, sys_type, trigger, self.submenu, self.HOME = False, command, TrigNum, False, True
## - trigger delivery
ParallelPort(trigger, 0)
# --> Type Of System: Cue-Driven & Target-Driven
elif any([command == "Cue-Driven", command == "Target-Driven"]):
## - initialize the video~play
Config_Video(command)
## - switch to first tab & interface~reset
self.ready = False
gobject.idle_add(self.GUI_ResetTabs, self.submenu)
while not self.ready:
None
## - variable reset
UT_status, sys_type, trigger, self.submenu, self.HOME = False, command, TrigNum, False, True
## - load of the system-targets
codes = HCI_codes[sys_type]
## - trigger delivery
ParallelPort(trigger, 0)
# --> Warning Sign: Preparation for the MI Movement
elif command == "warning":
## - GUI modification
self.ready = False
gobject.idle_add(self.Warning_Sign, UT_status, sys_type)
while not self.ready:
None
## - trigger delivery
ParallelPort(trigger, TrigNum)
# --> Cue Onset: MI Movement Performance
elif command == "cue":
## - beep performance
beep.play()
## - GUI modification
self.ready = False
gobject.idle_add(self.Cue_Onset, UT_status, target, sys_type)
while not self.ready:
None
## - trigger delivery
ParallelPort(trigger, TrigNum)
# --> Blank: random inter-trial interval (only Tutorial_MI, Tutorial_CMD & Training_GUI)
# "Execution of the sent cue in order to do a demostration of the command"
elif command == "blank":
## - CASE 1: Tutorial_MI
if sys_type == "MI":
gobject.idle_add(self.tutorial.UT_BlankMI, target)
## - CASE 2: Tutorial_CMD and Training_GUI
else:
self.ready = False
if target == "left":
click.play()
gobject.idle_add(self.Select_Command, UT_status, target, sys_type, code)
elif target == "right":
click.play()
gobject.idle_add(self.Navigate_Command, UT_status, target, sys_type, code)
elif target == "idle":
gobject.idle_add(self.No_Command, UT_status, sys_type, target, command)
while not self.ready:
None
## - trigger delivery
ParallelPort(trigger, TrigNum)
# --> Left: user's command interpretation
elif command == "left":
self.ready = False
## - CASE 1 & 2: Testing_GUI & Cue-Driven System
if any([sys_type == "Testing", sys_type == "Cue-Driven"]):
if command == target:
correct.play()
gobject.idle_add(self.Select_Command, UT_status, target, sys_type, code)
else:
wrong.play()
gobject.idle_add(self.No_Command, UT_status, sys_type, target, command)
## - CASE 3: Target-Driven System
elif sys_type == "Target-Driven":
click.play()
gobject.idle_add(self.Select_Command, UT_status, target, sys_type, code)
## - trigger delivery
while not self.ready:
None
ParallelPort(trigger, TrigNum)
# --> Right: user's command interpretation
elif command == "right":
self.ready = False
## - CASES 1 & 2: Testing GUI & Cue-Driven System
if any([sys_type == "Testing", sys_type == "Cue-Driven"]):
if command == target:
correct.play()
gobject.idle_add(self.Navigate_Command, UT_status, target, sys_type, code)
else:
wrong.play()
gobject.idle_add(self.No_Command, UT_status, sys_type, target, command)
## - CASE 3: Target-Driven System
elif sys_type == "Target-Driven":
click.play()
gobject.idle_add(self.Navigate_Command, UT_status, target, sys_type, code)
## - trigger delivery
while not self.ready:
None
ParallelPort(trigger, TrigNum)
# --> Idle: user's command interpretation
elif command == "idle":
self.ready = False
## - CASES 1 & 2: Testing GUI & Cue-Driven System
if any([sys_type == "Testing", sys_type == "Cue-Driven"]):
if command == target:
correct.play()
else:
wrong.play()
## - GUI modification
gobject.idle_add(self.No_Command, UT_status, sys_type, target, command)
## - trigger delivery
while not self.ready:
None
ParallelPort(trigger, TrigNum)
# --> Stopping HCI manipulation
elif command == "quit":
## - System Exit
print "The TCP connection has been closed."
break
# --> Audio-Target for Target-Driven Systems
else:
## -- Current Table
self.container = self.TabTables[self.general_menu.get_current_page()]
## -- Sequence of Instructions
for idx in range(len(Instructions)):
# variable assignment
m, i, wait = Instructions[idx][0], Instructions[idx][1], Instructions[idx][2]
# GUI modification according to the current tab
self.ready = False
gobject.idle_add(self.HCI_InstON, m, i, idx, codes)
while not self.ready:
None
# wait for 4 or 1.5 seconds
time.sleep(wait)
# play record
if idx == 1:
track = "\\".join(["Sounds\\Target-DrivenSys", target])
track = device.open_file(track)
# playing 3 times the target-
track.play()
while track.playing == 1:
None
time.sleep(1)
track.play()
while track.playing == 1:
None
# GUI modification according to the current tab
self.ready = False
gobject.idle_add(self.HCI_InstOFF)
while not self.ready:
None
# (e) +++++ self.GUI_VE (HCIresponse) Assessment +++++
# e.1 CASE 1: HCI-codes (next target if one option from the correct submenu is selected)
if self.GUI_VE == code:
# --> play feedback
TCPmsg, codes = self.HCI_Feedback(sys_type, codes, device, source_id)
# --> play distractor randomly
# if sys_type == 'Target-Driven':
# distractor, repeats, rand_time = distractors.pop(0), distractor_rpts.pop(0), random.randint(40000, 80000)
# source_id = gobject.timeout_add(rand_time, self.HCI_Distractors, repeats)
# e.2 Any other case (there are no targets to pursue)
else:
# --> TCP message (ready + current_subutton): Cue-Driven System Proposes
TCPmsg = "_".join(["Task/MenuLength", str(self.current_subutton), str(self.current_len)])
# (f) +++++ Play of the Distractor if it is available +++++
# if all([self.PLAY, self.repeat > 0]):
# distractor.play()
# self.PLAY = False
# (g) +++++ Reply to BCI-System +++++
BCICliSock.send(TCPmsg)
print "Satisfactory reply to the TCP client: ", TCPmsg
# ================================
# |3| Closure of TCP-communication
# ================================
BCICliSock.close()
HCISerSock.close()
def __init__(self, callsign=None):
threading.Thread.__init__(self)
self.queue = Queue.Queue()
self.device = audiere.open_device()
self.callsign = callsign
def AlphaPeak(self, widget, event):
'Method to calculate the individual alpha frequency'
# ==================================================
# Data Acquisition
# ==================================================
print '\n\n***** INDIVIDUAL ALPHA FREQUENCY (IAF) *****'
# ***** Data Storage *****
EEG_EPOCHS = []
device = audiere.open_device()
start = device.open_file('Sounds\\iaf_start.wav')
stop = device.open_file('Sounds\\iaf_stop.wav')
# ***** Recording EC&EO Condition *****
for msg in ['Start recording the eyes close condition?', 'Start recording the eyes open condition?']:
DialogBox(msg, 'Individual Alpha Frequency')
start.play()
# (a) Local Variables Declaration
TCP_ch, TCP_array, time_record, Fs = 72, 432, 180, 128
current_samples, data, TCP_samples, daq_samples = 0, '', TCP_array//TCP_ch//3, time_record*Fs
eeg_epoch = np.zeros((TCP_ch, 1))
# (b) BioSemi TCP Communication Start
Client_T11 = socket(AF_INET, SOCK_STREAM)
Client_T11.connect(('localhost', 778))
# ...........Data Acquisition per epoch.............
while current_samples < daq_samples:
# (c) Default Variables into the Loop
tempo = np.zeros((TCP_ch, TCP_samples))
# (d) Sample Collection per TCP_array
# --- loop to ensure a complete TCP_array collection
while len(data) < TCP_array: data += Client_T11.recv(TCP_array)
# --- saving data till to get the require length (i.e., daq_samples)
BYTES = data[:TCP_array]
data = data[TCP_array:]
# (e) Conversion from 24bits to Voltage
BYTES = bits_float(BYTES)
# --- Converting in microvolts
BYTES = BYTES * 31.25e-3
# (f) Data Re-Organization into Channels
new_ch_idx = 0
for ch in range(TCP_ch): tempo[new_ch_idx, :], new_ch_idx = BYTES[ch::TCP_ch], new_ch_idx+1
eeg_epoch = np.append(eeg_epoch, tempo, axis = 1)
current_samples += TCP_samples
# (g) delete the first column of eeg_epoch created by default
eeg_epoch = np.delete(eeg_epoch, 0, axis = 1)
print '==> Raw_Data: ', np.shape(eeg_epoch)
EEG_EPOCHS.append(eeg_epoch)
# (h) BioSemi TCP client closure
Client_T11.close()
stop.play()
# (i) Data storage
cPickle.dump(EEG_EPOCHS, open(root + 'IAF.p', 'wb'))
# ==================================================
# Signal Conditioning
# ==================================================
EEG_DSP = []
for eeg_epoch in EEG_EPOCHS:
# (a) Variable Declaration
sigcon_samples = 128 * 180
eeg_tempo = np.zeros((64, daq_samples))
eeg_dsp = np.zeros((64, sigcon_samples))
ref, BW, bandrej, DC = ['LargeLaplacian',[]], ['on',[0,0], [0,0]], ['off',(0,0)], ['off',(0,0)]
## -- filter design
BW[1][0], BW[1][1] = spectral_filter(128, 7, 0, 4, 'highpass')
BW[2][0], BW[2][1] = spectral_filter(128, 0, 14, 7, 'lowpass')
# (b) Spectral Filtering
for ch in range(64):eeg_tempo[ch,:] = SiGCoN(ch,eeg_epoch,layout,ref,BW,bandrej,DC,1,'spectral',[])
# (c) Spatial Filtering + Downsampling
for ch in range(64): eeg_dsp[ch,:] = SiGCoN(ch,eeg_tempo,layout,ref,BW,bandrej,DC,1,'spatial', [])
# (d) Data storage
EEG_DSP.append(eeg_dsp)
print '==> Conditioned_Data: ', np.shape(eeg_dsp)
# ==================================================
# Power Spectral Density
# ==================================================
FIG = plt.figure(num = 1, figsize = (15,10), facecolor = '#A0AEC1', edgecolor = 'white')
FIG.subplots_adjust(left = 0.075, right = 0.95, bottom = 0.05, top = 0.925, hspace = 0.3)
# (a) Eyes Closed (EC) Condition
## -- axis 1 configuration
ax1 = FIG.add_subplot(3, 1, 1)
ax1.tick_params(labelsize = 9)
ax1.grid(True)
ax1.set_xlabel('F r e q u e n c y [Hz]', fontsize = 10, fontname='Byington')
ax1.set_ylabel('PowerSpectralDensity[db/Hz]', fontsize = 10, fontname='Byington')
ax1.set_title('EYES CLOSE CONDITION', color = 'black', fontsize = 11, fontname='Byington')
## -- plot of EC condition
signal = np.mean(EEG_DSP[0], axis = 0)
print '==> ECspectrum_Data: ', np.shape(signal)
Pxx1, freqs1 = ax1.psd(signal, NFFT=512, Fs=128, noverlap=50, color=blue, linewidth=1.75)
## -- maximum values
max_values = np.max(Pxx1)
max_idxs = np.where(Pxx1 == max_values)[0]
for idxs in max_idxs: ax1.text(freqs1[idxs],10*np.log10(Pxx1[idxs]),str(freqs1[idxs]),color=blue,fontsize=11,fontname='Byington')
# (b) Eyes Open (EO) Condition
## -- axis 2 configuration
ax2 = FIG.add_subplot(3, 1, 2)
ax2.tick_params(labelsize = 9)
ax2.grid(True)
ax2.set_xlabel('F r e q u e n c y [Hz]', fontsize = 10, fontname='Byington')
ax2.set_ylabel('PowerSpectralDensity[db/Hz]', fontsize = 10, fontname='Byington')
ax2.set_title('EYES OPEN CONDITION', color = 'black', fontsize = 11, fontname='Byington')
## -- plot of EO condition
signal = np.mean(EEG_DSP[-1], axis = 0)
print '==> EOspectrum_Data: ', np.shape(signal)
Pxx2, freqs2 = ax2.psd(signal, NFFT=512, Fs=128, noverlap=50, color=orange, linewidth=1.75)
## -- maximum values
max_values = np.max(Pxx2)
max_idxs = np.where(Pxx2 == max_values)[0]
for idxs in max_idxs: ax2.text(freqs2[idxs],10*np.log10(Pxx2[idxs]),str(freqs2[idxs]),color=orange,fontsize=11,fontname='Byington')
# (c) Comparison between EC and EO Conditions
## -- axis 3 configuration
ax3 = FIG.add_subplot(3, 1, 3)
ax3.tick_params(labelsize = 9)
ax3.grid(True)
ax3.set_xlabel('F r e q u e n c y [Hz]', fontsize = 10, fontname='Byington')
ax3.set_ylabel('PowerSpectralDensity[db/Hz]', fontsize = 10, fontname='Byington')
ax3.set_title('DIFFERENCE BETWEEN EC & EO CONDITIONS', color = 'black', fontsize = 11, fontname='Byington')
## -- plot of ECvsEO condition
signal = 10*np.log10(Pxx1) - 10*np.log10(Pxx2)
print '==> ECvsEOspectrum_Data: ', np.shape(signal)
ax3.plot(freqs1, signal, color = '#AD0066', linewidth = 1.75)
## -- maximum values
max_values = np.max(signal)
max_idxs = np.where(signal == max_values)[0]
for idxs in max_idxs: ax3.text(freqs1[idxs],signal[idxs],str(freqs1[idxs]),color='#AD0066',fontsize=11,fontname='Byington')
## -- display & storage
url = root + 'IAF.png'
plt.savefig(url, facecolor = '#A0AEC1', edgecolor = 'white')
plt.show()
print '********************************************\n'
def init(self):
super(TactileOddball, self).init()
self.au = audiere.open_device()
def AlphaPeak(self, widget, event):
'Method to calculate the individual alpha frequency'
# ==================================================
# Data Acquisition
# ==================================================
print '\n\n***** INDIVIDUAL ALPHA FREQUENCY (IAF) *****'
# ***** Data Storage *****
EEG_EPOCHS = []
device = audiere.open_device()
start = device.open_file('Sounds\\iaf_start.wav')
stop = device.open_file('Sounds\\iaf_stop.wav')
# ***** Recording EC&EO Condition *****
for msg in [
'Start recording the eyes close condition?',
'Start recording the eyes open condition?'
]:
DialogBox(msg, 'Individual Alpha Frequency')
start.play()
# (a) Local Variables Declaration
TCP_ch, TCP_array, time_record, Fs = 72, 432, 180, 128
current_samples, data, TCP_samples, daq_samples = 0, '', TCP_array // TCP_ch // 3, time_record * Fs
eeg_epoch = np.zeros((TCP_ch, 1))
# (b) BioSemi TCP Communication Start
Client_T11 = socket(AF_INET, SOCK_STREAM)
Client_T11.connect(('localhost', 778))
# ...........Data Acquisition per epoch.............
while current_samples < daq_samples:
# (c) Default Variables into the Loop
tempo = np.zeros((TCP_ch, TCP_samples))
# (d) Sample Collection per TCP_array
# --- loop to ensure a complete TCP_array collection
while len(data) < TCP_array:
data += Client_T11.recv(TCP_array)
# --- saving data till to get the require length (i.e., daq_samples)
BYTES = data[:TCP_array]
data = data[TCP_array:]
# (e) Conversion from 24bits to Voltage
BYTES = bits_float(BYTES)
# --- Converting in microvolts
BYTES = BYTES * 31.25e-3
# (f) Data Re-Organization into Channels
new_ch_idx = 0
for ch in range(TCP_ch):
tempo[new_ch_idx, :], new_ch_idx = BYTES[
ch::TCP_ch], new_ch_idx + 1
eeg_epoch = np.append(eeg_epoch, tempo, axis=1)
current_samples += TCP_samples
# (g) delete the first column of eeg_epoch created by default
eeg_epoch = np.delete(eeg_epoch, 0, axis=1)
print '==> Raw_Data: ', np.shape(eeg_epoch)
EEG_EPOCHS.append(eeg_epoch)
# (h) BioSemi TCP client closure
Client_T11.close()
stop.play()
# (i) Data storage
cPickle.dump(EEG_EPOCHS, open(root + 'IAF.p', 'wb'))
# ==================================================
# Signal Conditioning
# ==================================================
EEG_DSP = []
for eeg_epoch in EEG_EPOCHS:
# (a) Variable Declaration
sigcon_samples = 128 * 180
eeg_tempo = np.zeros((64, daq_samples))
eeg_dsp = np.zeros((64, sigcon_samples))
ref, BW, bandrej, DC = ['LargeLaplacian',
[]], ['on', [0, 0],
[0, 0]], ['off',
(0, 0)], ['off', (0, 0)]
## -- filter design
BW[1][0], BW[1][1] = spectral_filter(128, 7, 0, 4, 'highpass')
BW[2][0], BW[2][1] = spectral_filter(128, 0, 14, 7, 'lowpass')
# (b) Spectral Filtering
for ch in range(64):
eeg_tempo[ch, :] = SiGCoN(ch, eeg_epoch, layout, ref, BW,
bandrej, DC, 1, 'spectral', [])
# (c) Spatial Filtering + Downsampling
for ch in range(64):
eeg_dsp[ch, :] = SiGCoN(ch, eeg_tempo, layout, ref, BW,
bandrej, DC, 1, 'spatial', [])
# (d) Data storage
EEG_DSP.append(eeg_dsp)
print '==> Conditioned_Data: ', np.shape(eeg_dsp)
# ==================================================
# Power Spectral Density
# ==================================================
FIG = plt.figure(num=1,
figsize=(15, 10),
facecolor='#A0AEC1',
edgecolor='white')
FIG.subplots_adjust(left=0.075,
right=0.95,
bottom=0.05,
top=0.925,
hspace=0.3)
# (a) Eyes Closed (EC) Condition
## -- axis 1 configuration
ax1 = FIG.add_subplot(3, 1, 1)
ax1.tick_params(labelsize=9)
ax1.grid(True)
ax1.set_xlabel('F r e q u e n c y [Hz]',
fontsize=10,
fontname='Byington')
ax1.set_ylabel('PowerSpectralDensity[db/Hz]',
fontsize=10,
fontname='Byington')
ax1.set_title('EYES CLOSE CONDITION',
color='black',
fontsize=11,
fontname='Byington')
## -- plot of EC condition
signal = np.mean(EEG_DSP[0], axis=0)
print '==> ECspectrum_Data: ', np.shape(signal)
Pxx1, freqs1 = ax1.psd(signal,
NFFT=512,
Fs=128,
noverlap=50,
color=blue,
linewidth=1.75)
## -- maximum values
max_values = np.max(Pxx1)
max_idxs = np.where(Pxx1 == max_values)[0]
for idxs in max_idxs:
ax1.text(freqs1[idxs],
10 * np.log10(Pxx1[idxs]),
str(freqs1[idxs]),
color=blue,
fontsize=11,
fontname='Byington')
# (b) Eyes Open (EO) Condition
## -- axis 2 configuration
ax2 = FIG.add_subplot(3, 1, 2)
ax2.tick_params(labelsize=9)
ax2.grid(True)
ax2.set_xlabel('F r e q u e n c y [Hz]',
fontsize=10,
fontname='Byington')
ax2.set_ylabel('PowerSpectralDensity[db/Hz]',
fontsize=10,
fontname='Byington')
ax2.set_title('EYES OPEN CONDITION',
color='black',
fontsize=11,
fontname='Byington')
## -- plot of EO condition
signal = np.mean(EEG_DSP[-1], axis=0)
print '==> EOspectrum_Data: ', np.shape(signal)
Pxx2, freqs2 = ax2.psd(signal,
NFFT=512,
Fs=128,
noverlap=50,
color=orange,
linewidth=1.75)
## -- maximum values
max_values = np.max(Pxx2)
max_idxs = np.where(Pxx2 == max_values)[0]
for idxs in max_idxs:
ax2.text(freqs2[idxs],
10 * np.log10(Pxx2[idxs]),
str(freqs2[idxs]),
color=orange,
fontsize=11,
fontname='Byington')
# (c) Comparison between EC and EO Conditions
## -- axis 3 configuration
ax3 = FIG.add_subplot(3, 1, 3)
ax3.tick_params(labelsize=9)
ax3.grid(True)
ax3.set_xlabel('F r e q u e n c y [Hz]',
fontsize=10,
fontname='Byington')
ax3.set_ylabel('PowerSpectralDensity[db/Hz]',
fontsize=10,
fontname='Byington')
ax3.set_title('DIFFERENCE BETWEEN EC & EO CONDITIONS',
color='black',
fontsize=11,
fontname='Byington')
## -- plot of ECvsEO condition
signal = 10 * np.log10(Pxx1) - 10 * np.log10(Pxx2)
print '==> ECvsEOspectrum_Data: ', np.shape(signal)
ax3.plot(freqs1, signal, color='#AD0066', linewidth=1.75)
## -- maximum values
max_values = np.max(signal)
max_idxs = np.where(signal == max_values)[0]
for idxs in max_idxs:
ax3.text(freqs1[idxs],
signal[idxs],
str(freqs1[idxs]),
color='#AD0066',
fontsize=11,
fontname='Byington')
## -- display & storage
url = root + 'IAF.png'
plt.savefig(url, facecolor='#A0AEC1', edgecolor='white')
plt.show()
print '********************************************\n'
# # -label update-
# message.set_text(m)
# # -image widget-
# cartoon = Image(i)
# table.attach(cartoon, 0, 1, 0, 1)
# # -wait for 4 or 1.5 seconds-
# time.sleep(wait)
# # -play record-
# if idx == 2:
# track = '\\'.join(['Sounds\\Target-DrivenSys', target])
# track = device.open_file(track)
# # playing 3 times the target-
# track.play()
# while track.playing == 1: None
# track.play()
# while track.playing == 1: None
# track.play()
# while track.playing == 1: None
# # -image widget deleting-
# table.remove(cartoon)
## -- window exit
def destroy(widget): gtk.main_quit()
device = audiere.open_device()
DialogBox(device, None)
gtk.main()
time.sleep(3)
self.__incSeq(1) if seq_idx < len(self.seqs): self.sound_stack.append(self.cur_seq) self.cur_seq = self.seqs[self_idx] self.__loop() else: self.__loop() elif c == 7: if len(self.sound_stack) == 0: self.toneOff() self.is_active = 0 else: self.cur_seq = self.sound_stack.pop() self.__loop() elif c == 8: self.action = 8 self.word_28f = self.cur_seq[:2] self.__incSeq(2) self.byte_298 = self.cur_seq[0] self.__incSeq(1) self.byte_299 = self.cur_seq[0] self.__incSeq(1) else: print 'invalid sequence case (0x%x)!!' % c sm = SoundMachine(sequences, audiere.open_device()) sm.launch(1, SEQUENCE_NO) while True: if not sm.launch(2): break
def __init__(self): self.sound_class = Sound_Audiere self.audiere = audiere.open_device()
def run(self):
'This sequence is performed according to the available\
time to do it, because the main thread is used by gtk.main()'
# ======================
# |1| HCI Initialization
# ======================
## -- default variables
codes, distractors, source_id, distractor, repeats = ['None'], [], 0, None, 0
## -- default attributes
self.submenu,self.HOME,self.targets,self.current_subutton,self.current_len,self.video_len,self.ready,self.repeat,self.PLAY = \
False ,True ,[None] ,'unknown_task' ,'unknown_len' ,0 ,False ,0 ,False
## -- starting a device to play sounds by means of the 'audiere' library
device = audiere.open_device()
## -- loading the cue-sounds
beep = device.open_file(beep_loc)
correct = device.open_file(correct_loc)
wrong = device.open_file(wrong_loc)
click = device.open_file(click_loc)
## -- loading the distractor-sounds
#for track in distractor_locs: distractors.append(device.open_file(track))
## -- intro report
HCI_Presentation()
## -- waiting a client request (i.e., BCI System Connection)
print 'Waiting for connection . . .'
BCICliSock, addr = HCISerSock.accept()
print '. . . connected from:', addr
# ==================================================================
# |2| Infinite loop to not lose the control thread (OnLine Paradigm)
# ==================================================================
while not self.quit:
# (a) +++++ Receiving an instruction from BCI client +++++
instruction = BCICliSock.recv(BUFSIZ)
if not instruction: break
print 'The received instruction is:', instruction
# (b) +++++ Decoding the received instruction +++++
TrigNum = instruction.split('*')[0]
instruction = instruction.split('*')[-1]
command = instruction.split('_')[0]
target = instruction.split('_')[-1]
# (c) +++++ Reset of Variables +++++
code, self.GUI_VE = codes[0], ''
# (d) +++++ Calling the appropiated method according to the TCP-message +++++
# --> Start saving continuos eeg data (PauseOff) or
# Pause saving continous eeg data (PauseOn)
if command.isdigit():
time.sleep(1)
ParallelPort(TrigNum, 0)
time.sleep(1)
# --> Type Of System: Tutorial_MI or Tutorial_CMD
elif command == 'Tutorial':
## - variable declaration
UT_status, sys_type, trigger = True, target, TrigNum
## - configuration of the Tutorial_Command System
if target == 'CMD':
self.submenu, self.HOME = False, True
gobject.idle_add(self.tutorial.UT_CMDSysConfig)
## - trigger delivery
ParallelPort(trigger, 0)
# --> Type Of System: Training_GUI & Testing_GUI
elif any([command=='Training',command=='Testing']):
## - switch to first tab & interface~reset
self.ready = False
gobject.idle_add(self.GUI_ResetTabs, self.submenu)
while not self.ready: None
## - variable reset
UT_status, sys_type, trigger, self.submenu, self.HOME = False, command, TrigNum, False, True
## - trigger delivery
ParallelPort(trigger, 0)
# --> Type Of System: Cue-Driven & Target-Driven
elif any([command=='Cue-Driven',command=='Target-Driven']):
## - initialize the video~play
Config_Video(command)
## - switch to first tab & interface~reset
self.ready = False
gobject.idle_add(self.GUI_ResetTabs, self.submenu)
while not self.ready: None
## - variable reset
UT_status, sys_type, trigger, self.submenu, self.HOME = False, command, TrigNum, False, True
## - load of the system-targets
codes = HCI_codes[sys_type]
## - trigger delivery
ParallelPort(trigger, 0)
# --> Warning Sign: Preparation for the MI Movement
elif command == 'warning':
## - GUI modification
self.ready = False
gobject.idle_add(self.Warning_Sign, UT_status, sys_type)
while not self.ready: None
## - trigger delivery
ParallelPort(trigger, TrigNum)
# --> Cue Onset: MI Movement Performance
elif command == 'cue':
## - beep performance
beep.play()
## - GUI modification
self.ready = False
gobject.idle_add(self.Cue_Onset, UT_status, target, sys_type)
while not self.ready: None
## - trigger delivery
ParallelPort(trigger, TrigNum)
# --> Blank: random inter-trial interval (only Tutorial_MI, Tutorial_CMD & Training_GUI)
# "Execution of the sent cue in order to do a demostration of the command"
elif command == 'blank':
## - CASE 1: Tutorial_MI
if sys_type == 'MI':
gobject.idle_add(self.tutorial.UT_BlankMI, target)
## - CASE 2: Tutorial_CMD and Training_GUI
else:
self.ready = False
if target == 'left':
click.play()
gobject.idle_add(self.Select_Command, UT_status, target, sys_type, code)
elif target == 'right':
click.play()
gobject.idle_add(self.Navigate_Command, UT_status, target, sys_type, code)
elif target == 'idle':
gobject.idle_add(self.No_Command, UT_status, sys_type, target, command)
while not self.ready: None
## - trigger delivery
ParallelPort(trigger, TrigNum)
# --> Left: user's command interpretation
elif command == 'left':
self.ready = False
## - CASE 1 & 2: Testing_GUI & Cue-Driven System
if any([sys_type == 'Testing', sys_type == 'Cue-Driven']):
if command == target:
correct.play()
gobject.idle_add(self.Select_Command, UT_status, target, sys_type, code)
else:
wrong.play()
gobject.idle_add(self.No_Command, UT_status, sys_type, target, command)
## - CASE 3: Target-Driven System
elif sys_type == 'Target-Driven':
click.play()
gobject.idle_add(self.Select_Command, UT_status, target, sys_type, code)
## - trigger delivery
while not self.ready: None
ParallelPort(trigger, TrigNum)
# --> Right: user's command interpretation
elif command == 'right':
self.ready = False
## - CASES 1 & 2: Testing GUI & Cue-Driven System
if any([sys_type == 'Testing', sys_type == 'Cue-Driven']):
if command == target:
correct.play()
gobject.idle_add(self.Navigate_Command, UT_status, target, sys_type, code)
else:
wrong.play()
gobject.idle_add(self.No_Command, UT_status, sys_type, target, command)
## - CASE 3: Target-Driven System
elif sys_type == 'Target-Driven':
click.play()
gobject.idle_add(self.Navigate_Command, UT_status, target, sys_type, code)
## - trigger delivery
while not self.ready: None
ParallelPort(trigger, TrigNum)
# --> Idle: user's command interpretation
elif command == 'idle':
self.ready = False
## - CASES 1 & 2: Testing GUI & Cue-Driven System
if any([sys_type == 'Testing', sys_type == 'Cue-Driven']):
if command == target:
correct.play()
else:
wrong.play()
## - GUI modification
gobject.idle_add(self.No_Command, UT_status, sys_type, target, command)
## - trigger delivery
while not self.ready: None
ParallelPort(trigger, TrigNum)
# --> Stopping HCI manipulation
elif command == 'quit':
## - System Exit
print 'The TCP connection has been closed.'
break
# --> Audio-Target for Target-Driven Systems
else:
## -- Current Table
self.container = self.TabTables[self.general_menu.get_current_page()]
## -- Sequence of Instructions
for idx in range(len(Instructions)):
# variable assignment
m, i, wait = Instructions[idx][0], Instructions[idx][1], Instructions[idx][2]
# GUI modification according to the current tab
self.ready = False
gobject.idle_add(self.HCI_InstON, m, i, idx, codes)
while not self.ready: None
# wait for 4 or 1.5 seconds
time.sleep(wait)
# play record
if idx == 1:
track = '\\'.join(['Sounds\\Target-DrivenSys', target])
track = device.open_file(track)
# playing 3 times the target-
track.play()
while track.playing == 1: None
time.sleep(1)
track.play()
while track.playing == 1: None
# GUI modification according to the current tab
self.ready = False
gobject.idle_add(self.HCI_InstOFF)
while not self.ready: None
# (e) +++++ self.GUI_VE (HCIresponse) Assessment +++++
# e.1 CASE 1: HCI-codes (next target if one option from the correct submenu is selected)
if self.GUI_VE == code:
# --> play feedback
TCPmsg, codes = self.HCI_Feedback(sys_type, codes, device, source_id)
# --> play distractor randomly
#if sys_type == 'Target-Driven':
# distractor, repeats, rand_time = distractors.pop(0), distractor_rpts.pop(0), random.randint(40000, 80000)
# source_id = gobject.timeout_add(rand_time, self.HCI_Distractors, repeats)
# e.2 Any other case (there are no targets to pursue)
else:
# --> TCP message (ready + current_subutton): Cue-Driven System Proposes
TCPmsg = '_'.join(['Task/MenuLength', str(self.current_subutton), str(self.current_len)])
# (f) +++++ Play of the Distractor if it is available +++++
#if all([self.PLAY, self.repeat > 0]):
# distractor.play()
# self.PLAY = False
# (g) +++++ Reply to BCI-System +++++
BCICliSock.send(TCPmsg)
print 'Satisfactory reply to the TCP client: ', TCPmsg
# ================================
# |3| Closure of TCP-communication
# ================================
BCICliSock.close()
HCISerSock.close()
def init(self):
super(TactileOddball,self).init()
self.au = audiere.open_device()
def __init__(self):
threading.Thread.__init__(self)
self.device = audiere.open_device()
self.stream = self.device.open_file(CALL_FILE)
def init_tanooki():
global device
global stream
device = audiere.open_device()
stream = None
#Author:
#Steven Richards <sbrichards@{mit.edu, gnu.org}>
#'FASCII' Based AES256 Point-to-Point Light Encoding
import audiere
import base64
import binascii
import os
#from Crypto.Cipher import AES
from time import sleep
from math import sqrt
device = audiere.open_device()#Open and assign the audio device
def playing(fasciidata):
loop = 2
for char in fasciidata:
if loop % 2 == 0:
tone = device.create_tone((2000 + (ord(char) * 100) + 100))
tone.play()
sleep(0.03)
tone.stop()
loop += 1
print char
print ((2000 + (ord(char) * 100) + 100))
print ((2000 + (ord(char) * 100)))
else:
tone = device.create_tone((2000 + (ord(char) * 100) - 100))
tone.play()
import sys
sys.path.append("c:\\users\\bill\\my documents\\syscompy")
import smr_io
import audiere
import numpy as np
filepath = "c:\\users\\bill\\my documents\\syscompy\\2004ParkfieldEquake\\BMR06001.ASC"
x, y, z = smr_io.get_smr_data(filepath)
xy = np.column_stack((x,y))
xz = np.column_stack((x,z))
zy = np.column_stack((z,y))
d = audiere.open_device()
wx = d.open_array(x, 200)
wy = d.open_array(y, 200)
wz = d.open_array(z, 200)
wxy = d.open_array(xy, 200)
wxz = d.open_array(xz, 200)
wzy = d.open_array(zy, 200)
wx.pitchshift = 3
wy.pitchshift = 3
wz.pitchshift = 3
wx.play()
def playaudio(audio_array):
ds = audiere.open_device()
os = ds.open_array(audio_array, 44100)
os.play()
