def save_multiple_phasePlot2(
SeqParam_list,
filename,
label_list=[],
title="Diagram of states",
legendOn=True,
xLim=1,
yLim=1,
fontSize=10,
saveFormat='png'):
"""
Plot multiple sequences on the same Pappu-Das phase plot (diagram of states) and save that file.
This function takes SequenceParameter objects rather than raw values.
INPUT:
--------------------------------------------------------------------------------
SeqParam_list | list of sequence parameter objects
filename | name of file to save (.png is appended)
label_list | On-plot label of sequence (DEFAULT = no label)
title | Plot title (DEFAULT = "Diagram of states")
legendOn | Include the phase diagram region legend (DEFAULT = True)
xLim | Set upper limit for the x axis (DEFAULT = 1)
yLim | Set upper limit for the y axis (DEFAULT = 1)
fontSize | Set font size for the point labels (DEFAULT = 10)
saveFormat | Defines the file formal to save plots as. This parameter
is passed to matplotlibs savefig command which supports
the following filetypes: emf, eps, pdf, png, ps, raw,
rgba, svg, svgz. (DEFAULT = png)
OUTPUT:
--------------------------------------------------------------------------------
No output, but if succesful a file with filename is generated with the associated plot
"""
# construct the fraction positive and negative vectors
fp_list = []
fn_list = []
for seq in SeqParam_list:
fp_list.append(seq.get_fraction_positive())
fn_list.append(seq.get_fraction_negative())
plotting.save_multiple_phasePlot(
fp_list,
fn_list,
filename,
label_list,
title,
legendOn,
xLim,
yLim,
fontSize,
saveFormat)
def save_multiple_phasePlot(
fp_list,
fn_list,
filename,
label_list=[],
title="Diagram of states",
legendOn=True,
xLim=1,
yLim=1,
fontSize=10,
saveFormat='png'):
"""
Plot multiple sequences on the same Pappu-Das phase plot (diagram of states) and save that file
INPUT:
--------------------------------------------------------------------------------
fp_list | Fraction of positive residues
fn_list | Fraction of negative residues
filename | name of file to save (.png is appended)
label_list | On-plot label of sequence (DEFAULT = no label)
title | Plot title (DEFAULT = "Diagram of states")
legendOn | Include the phase diagram region legend (DEFAULT = True)
xLim | Set upper limit for the x axis (DEFAULT = 1)
yLim | Set upper limit for the y axis (DEFAULT = 1)
fontSize | Set font size for the point labels (DEFAULT = 10)
saveFormat | Defines the file formal to save plots as. This parameter
is passed to matplotlibs savefig command which supports
the following filetypes: emf, eps, pdf, png, ps, raw,
rgba, svg, svgz. (DEFAULT = png)
OUTPUT:
--------------------------------------------------------------------------------
No output, but if succesful a file with filename is generated with the associated plot
"""
plotting.save_multiple_phasePlot(
fp_list,
fn_list,
filename,
label_list,
title,
legendOn,
xLim,
yLim,
fontSize,
saveFormat)
def save_multiple_phasePlot2(SeqParam_list,
filename,
label_list=[],
title="Diagram of states",
legendOn=True,
xLim=1,
yLim=1,
fontSize=10,
saveFormat='png'):
"""
Plot multiple sequences on the same Pappu-Das phase plot (diagram of states) and save that file.
This function takes SequenceParameter objects rather than raw values.
INPUT:
--------------------------------------------------------------------------------
SeqParam_list | list of sequence parameter objects
filename | name of file to save (.png is appended)
label_list | On-plot label of sequence (DEFAULT = no label)
title | Plot title (DEFAULT = "Diagram of states")
legendOn | Include the phase diagram region legend (DEFAULT = True)
xLim | Set upper limit for the x axis (DEFAULT = 1)
yLim | Set upper limit for the y axis (DEFAULT = 1)
fontSize | Set font size for the point labels (DEFAULT = 10)
saveFormat | Defines the file formal to save plots as. This parameter
is passed to matplotlibs savefig command which supports
the following filetypes: emf, eps, pdf, png, ps, raw,
rgba, svg, svgz. (DEFAULT = png)
OUTPUT:
--------------------------------------------------------------------------------
No output, but if succesful a file with filename is generated with the associated plot
"""
# construct the fraction positive and negative vectors
fp_list = []
fn_list = []
for seq in SeqParam_list:
fp_list.append(seq.get_fraction_positive())
fn_list.append(seq.get_fraction_negative())
plotting.save_multiple_phasePlot(fp_list, fn_list, filename, label_list,
title, legendOn, xLim, yLim, fontSize,
saveFormat)
def save_multiple_phasePlot(
fp_list,
fn_list,
filename,
label_list=[],
title="Diagram of states",
legendOn=True,
xLim=1,
yLim=1,
fontSize=10):
"""
Plot multiple sequences on the same Pappu-Das phase plot (diagram of states) and save that file
INPUT:
--------------------------------------------------------------------------------
fp_list | Fraction of positive residues
fn_list | Fraction of negative residues
filename | name of file to save (.png is appended)
label_list | On-plot label of sequence (DEFAULT = no label)
title | Plot title (DEFAULT = "Diagram of states")
legendOn | Include the phase diagram region legend (DEFAULT = True)
xLim | Set upper limit for the x axis (DEFAULT = 1)
yLim | Set upper limit for the y axis (DEFAULT = 1)
fontSize | Set font size for the point labels (DEFAULT = 10)
OUTPUT:
--------------------------------------------------------------------------------
No output, but if succesful a file with filename is generated with the associated plot
"""
plotting.save_multiple_phasePlot(
fp_list,
fn_list,
filename,
label_list,
title,
legendOn,
xLim,
yLim,
fontSize)
def save_multiple_phasePlot(fp_list,
fn_list,
filename,
label_list=[],
title="Diagram of states",
legendOn=True,
xLim=1,
yLim=1,
fontSize=10,
saveFormat='png'):
"""
Plot multiple sequences on the same Pappu-Das phase plot (diagram of states) and save that file
INPUT:
--------------------------------------------------------------------------------
fp_list | Fraction of positive residues
fn_list | Fraction of negative residues
filename | name of file to save (.png is appended)
label_list | On-plot label of sequence (DEFAULT = no label)
title | Plot title (DEFAULT = "Diagram of states")
legendOn | Include the phase diagram region legend (DEFAULT = True)
xLim | Set upper limit for the x axis (DEFAULT = 1)
yLim | Set upper limit for the y axis (DEFAULT = 1)
fontSize | Set font size for the point labels (DEFAULT = 10)
saveFormat | Defines the file formal to save plots as. This parameter
is passed to matplotlibs savefig command which supports
the following filetypes: emf, eps, pdf, png, ps, raw,
rgba, svg, svgz. (DEFAULT = png)
OUTPUT:
--------------------------------------------------------------------------------
No output, but if succesful a file with filename is generated with the associated plot
"""
plotting.save_multiple_phasePlot(fp_list, fn_list, filename, label_list,
title, legendOn, xLim, yLim, fontSize,
saveFormat)
