def submit_indel_primer():
"""
This endpoint is used to submit an indel primer job.
The endpoint request is executed as a background task to keep the job alive.
"""
data = request.get_json()
# Generate an ID for the data based on its hash
data_hash = hash_it(data, length=32)
data['date'] = str(arrow.utcnow())
# Check whether analysis has previously been run and if so - skip
result = check_blob(f"reports/indel_primer/{data_hash}/results.tsv")
if result:
return jsonify({
'thread_name': 'done',
'started': True,
'data_hash': data_hash
})
logger.debug("Submitting Indel Primer Job")
# Upload query information
data_blob = f"reports/indel_primer/{data_hash}/input.json"
upload_file(data_blob, json.dumps(data), as_string=True)
thread = Thread(target=indel_primer_task,
args=(data_hash, data['site'], data['strain_1'],
data['strain_2'], SV_VCF_URL))
thread.daemon = True
thread.start()
return jsonify({
'thread_name': str(thread.name),
'started': True,
'data_hash': data_hash
})
def submit_h2():
"""
This endpoint is used to submit a heritability job.
The endpoint request is executed as a background task to keep the job alive.
"""
data = request.get_json()
data = [x for x in data[1:] if x[0] is not None]
header = ["AssayNumber", "Strain", "TraitName", "Replicate", "Value"]
data = pd.DataFrame(data, columns=header)
data = data.to_csv(index=False, sep="\t")
# Generate an ID for the data based on its hash
data_hash = hash_it(data, length=32)
logger.debug(data_hash)
# Upload data immediately.
data_blob = f"reports/heritability/{data_hash}/data.tsv"
upload_file(data_blob, data, as_string=True)
thread = Thread(target=h2_task, args=(
data,
data_hash,
))
thread.daemon = True
thread.start()
return jsonify({
'thread_name': str(thread.name),
'started': True,
'data_hash': data_hash
})
def donate():
"""
Process donation
"""
title = "Donate"
form = donation_form(request.form)
# Autofill email
if session.get('user') and not form.email.data:
form.email.data = session.get('user')['user_email']
if form.validate_on_submit():
# order_number is generated as a unique string
order_obj = {"is_donation": True, "date": chicago_date()}
order_obj['items'] = u"{}:{}".format("CeNDR strain and data support",
form.data.get('total'))
order_obj.update(form.data)
order_obj['invoice_hash'] = hash_it(order_obj, length=8)
order_obj[
'url'] = f"https://elegansvariation.org/order/{order_obj['invoice_hash']}"
send_email({
"from":
"*****@*****.**",
"to": [order_obj["email"]],
"cc":
app.config.get("CC_EMAILS"),
"subject":
f"CeNDR Dontaion #{order_obj['invoice_hash']}",
"text":
DONATE_SUBMISSION_EMAIL.format(
invoice_hash=order_obj["invoice_hash"],
donation_amount=order_obj.get('total'))
})
add_to_order_ws(order_obj)
return redirect(url_for("order.order_confirmation",
invoice_hash=order_obj["invoice_hash"]),
code=302)
return render_template('about/donate.html', **locals())