def __init__(self, entityTypes, labelList=[]):
""" Create a new mention finder to find a given list of mention types.
entityTypes = list of mention types to find (e.g. group, outcome)
"""
BaseMentionFinder.__init__(self, entityTypes)
self.simpleTagger = 'java -cp ' + self.classpath \
+ ' cc.mallet.fst.SimpleTagger'
self.labelSet = set(labelList)
def __init__(self, entityTypes, randomSeed, recall=1.0):
""" Create a finder that labels tokens with a given type if they have this annotation.
entityType = the mention types to find (e.g. group, outcome)
recall = desired recall of mention finder [0,1]
"""
BaseMentionFinder.__init__(self, entityTypes)
self.recall = recall
self.randomSeed = randomSeed
self.finderType = 'random'
def __init__(self, entityTypes, labelFeatures=[]):
""" Create a new mention finder to find a given list of mention types.
entityTypes = list of mention types to find (e.g. group, outcome)
binaryClassification = True if a separate classifier is to be trained
for each mention type.
"""
BaseMentionFinder.__init__(self, entityTypes)
self.simpleTagger = 'java -cp ' + self.classpath \
+ ' cc.mallet.fst.SimpleTagger'
self.labelFeatures = set(labelFeatures)
def __init__(self, entityTypes, tokenClassifier, labelFeatures=[], useReport=True, tokenFilter=None, randomSeed=42):
""" Create a new mention finder to find a given list of mention types.
entityTypes = list of mention types to find (e.g. group, outcome)
"""
BaseMentionFinder.__init__(self, entityTypes, tokenClassifier)
self.useReport = useReport
self.commonLemmas['group'] = set(['group', 'control', 'placebo', 'treatment'])
self.commonLemmas['outcome'] = set(['cure', 'recover', 'improve', 'mortality',
'morbidity', 'die', 'adverse', 'event'])
self.dependencyPaths = {}
self.labelSet = set(labelFeatures)
self.tokenFilter = tokenFilter
self.randomSeed = randomSeed
random.seed(self.randomSeed)
def __init__(self, entityTypes): """ Create a new mention finder to find a given list of mention types """ BaseMentionFinder.__init__(self, entityTypes, None) self.finderType = 'banner'
def __init__(self, entityTypes):
""" Create a finder that labels tokens using rules
entityTypes = the mention types to find (e.g. group, outcome)
"""
BaseMentionFinder.__init__(self, entityTypes, tokenClassifier=None)
def __init__(self, entityTypes):
""" Create a new mention finder to find a given list of mention types """
BaseMentionFinder.__init__(self, entityTypes, None)
self.finderType = 'banner'