def test_import_existing_updates(self):
"importing existing taxon updates it"
json_string = '[{"rank": "Species", "epithet": "tuberosus", "ht-rank"'\
': "Genus", "ht-epithet": "Calopogon", "hybrid": false, "author"'\
': "Britton et al."}]'
with open(self.temp_path, "w") as f:
f.write(json_string)
previously = Species.retrieve_or_create(
self.session, {'ht-epithet': u"Calopogon",
'epithet': u"tuberosus"})
self.assertEquals(previously.sp_author, None)
importer = JSONImporter(MockImportView())
importer.filename = self.temp_path
importer.on_btnok_clicked(None)
self.session.commit()
afterwards = Species.retrieve_or_create(
self.session, {'ht-epithet': u"Calopogon",
'epithet': u"tuberosus"})
self.assertEquals(afterwards.sp_author, u"Britton et al.")
def test_import_ignores_id_updating(self):
"importing taxon disregards id value if present (updating taxon)."
previously = Species.retrieve_or_create(self.session,
{'ht-epithet': u"Calopogon",
'epithet': u"tuberosus"}).id
json_string = '[{"rank": "Species", "epithet": "tuberosus", '\
'"ht-rank": "Genus", "ht-epithet": "Calopogon", "hybrid": false, '\
'"id": 8}]'
with open(self.temp_path, "w") as f:
f.write(json_string)
importer = JSONImporter(MockImportView())
importer.filename = self.temp_path
importer.on_btnok_clicked(None)
self.session.commit()
afterwards = Species.retrieve_or_create(self.session,
{'ht-epithet': u"Calopogon",
'epithet': u"tuberosus"}).id
self.assertEquals(previously, afterwards)
def species_to_fix(ssn, binomial, author, create=False):
if binomial.find(' ') == -1:
return None
binomial = utils.to_unicode(binomial)
author = utils.to_unicode(author)
gen_epithet, sp_epithet = binomial.split(' ', 1)
return Species.retrieve_or_create(
ssn, {'object': 'taxon',
'rank': 'species',
'ht-epithet': gen_epithet,
'epithet': sp_epithet,
'ht-rank': 'genus',
'author': author},
create=create)
def species_to_fix(ssn, binomial, author, create=False):
if binomial.find(' ') == -1:
return None
binomial = utils.to_unicode(binomial)
author = utils.to_unicode(author)
gen_epithet, sp_epithet = binomial.split(' ', 1)
return Species.retrieve_or_create(
ssn, {'object': 'taxon',
'rank': 'species',
'ht-epithet': gen_epithet,
'epithet': sp_epithet,
'ht-rank': 'genus',
'author': author},
create=create)
def species_to_fix(ssn, binomial, author, create=False):
if binomial.find(" ") == -1:
return None
binomial = utils.to_unicode(binomial)
author = utils.to_unicode(author)
gen_epithet, sp_epithet = binomial.split(" ", 1)
return Species.retrieve_or_create(
ssn,
{
"object": "taxon",
"rank": "species",
"ht-epithet": gen_epithet,
"epithet": sp_epithet,
"ht-rank": "genus",
"author": author,
},
create=create,
)