def create_baseline(self, household):
household_structure = HouseholdStructure.objects.get(
household=household, survey=self.survey1)
self.household_structure = household_structure
RepresentativeEligibilityFactory(
household_structure=household_structure)
HouseholdMember = get_model('bcpp_household_member', 'HouseholdMember')
self.household_member_female = HouseholdMember.objects.create(
household_structure=household_structure,
first_name='SUE',
initials='SW',
gender='F',
age_in_years=25,
study_resident='Yes',
relation='sister',
inability_to_participate=NOT_APPLICABLE)
self.household_member_male = HouseholdMember.objects.create(
household_structure=household_structure,
first_name='ERIK',
initials='EW',
gender='M',
age_in_years=25,
study_resident='Yes',
relation='brother',
inability_to_participate=NOT_APPLICABLE)
def setUp(self):
from bhp066.apps.bcpp.app_configuration.classes import BcppAppConfiguration
self.household_structure = None
self.registered_subject = None
self.representative_eligibility = None
self.study_site = None
self.intervention = None
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
BcppAppConfiguration().prepare()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
self.survey1 = Survey.objects.get(survey_name='BCPP Year 2') # see app_configuration
plot = PlotFactory(community='digawana', household_count=1, status='residential_habitable')
household = Household.objects.get(plot=plot)
self.household_structure = HouseholdStructure.objects.get(household=household, survey=self.survey1)
self.representative_eligibility = RepresentativeEligibilityFactory(household_structure=self.household_structure)
self.study_site = StudySite.objects.get(site_code=site_mappers.get_current_mapper().map_code)
self.intervention = site_mappers.get_registry(settings.CURRENT_COMMUNITY)().intervention
def setUp(self):
site_mappers.autodiscover()
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
self.app_config = BcppAppConfiguration()
self.app_config.prepare()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
self.mapper = site_mappers.get_current_mapper()
# self.app_config.prep_survey_for_tests()
self.community = 'test_community'
plot = PlotFactory(community=self.community, household_count=1, status='residential_habitable')
survey = Survey.objects.all().order_by('datetime_start')[0]
self.study_site = StudySite.objects.get(site_code='01')
self.household_structure = HouseholdStructure.objects.get(household__plot=plot, survey=survey)
RepresentativeEligibilityFactory(household_structure=self.household_structure)
self.male_dob = date.today() - relativedelta(years=25)
self.male_age_in_years = 25
self.male_first_name = 'ERIK'
self.male_initials = "EW"
self.household_member_male_T0 = HouseholdMemberFactory(
household_structure=self.household_structure, gender='M',
age_in_years=self.male_age_in_years, first_name=self.male_first_name,
initials=self.male_initials
)
EnrollmentChecklistFactory(
household_member=self.household_member_male_T0,
gender='M',
citizen='Yes',
dob=self.male_dob,
guardian='No',
initials=self.household_member_male_T0.initials,
part_time_resident='Yes'
)
self.subject_consent_male = SubjectConsentFactory(household_member=self.household_member_male_T0, study_site=self.study_site, gender='M', dob=self.male_dob, first_name=self.male_first_name, initials=self.male_initials)
self.registered_subject_male = RegisteredSubject.objects.get(subject_identifier=self.subject_consent_male.subject_identifier)
self.appointment_male_T0 = Appointment.objects.get(registered_subject=self.registered_subject_male, visit_definition__code='T0')
self.subject_visit_male_T0 = SubjectVisitFactory(appointment=self.appointment_male_T0, household_member=self.household_member_male_T0)
SubjectLocatorFactory(registered_subject=self.subject_visit_male_T0.appointment.registered_subject, subject_visit=self.subject_visit_male_T0)
self.household_member_T1 = None
self.update_call_list_class = UpdateCallList()
def setUp(self):
from bhp066.apps.bcpp.app_configuration.classes import BcppAppConfiguration
self.household_structure = None
self.registered_subject = None
self.representative_eligibility = None
self.study_site = None
self.intervention = None
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
site_mappers.autodiscover()
# set current community manually (not from settings)
site_mappers.current_community = 'test_community'
BcppAppConfiguration.study_start_datetime = datetime.today(
) + relativedelta(days=-2)
BcppAppConfiguration.study_end_datetime = datetime.today(
) + relativedelta(days=45)
bcpp_app_configuration = BcppAppConfiguration()
# bypass any check of site_code and community against settings
bcpp_app_configuration.confirm_site_code_in_settings = False
bcpp_app_configuration.confirm_community_in_settings = False
bcpp_app_configuration.prepare()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
self.survey1 = Survey.objects.get(
survey_name='BCPP Year 1') # see app_configuration
plot = PlotFactory(community='test_community',
household_count=1,
status='residential_habitable')
household = Household.objects.get(plot=plot)
self.household_structure = HouseholdStructure.objects.get(
household=household, survey=self.survey1)
self.representative_eligibility = RepresentativeEligibilityFactory(
household_structure=self.household_structure)
self.study_site = StudySite.objects.get(
site_code=site_mappers.get_current_mapper().map_code)
self.intervention = site_mappers.get_current_mapper().intervention
def create_annual(self, household):
household_structure = HouseholdStructure.objects.get(
household=household, survey=self.survey2)
RepresentativeEligibilityFactory(
household_structure=household_structure)
HouseholdStructure.objects.add_household_members_from_survey(
household, self.survey1, self.survey2)
HouseholdMember = get_model('bcpp_household_member', 'HouseholdMember')
self.household_member_female_annual = HouseholdMember.objects.get(
internal_identifier=self.household_member_female.
internal_identifier,
registered_subject=self.household_member_female.registered_subject,
household_structure=household_structure)
self.household_member_male_annual = HouseholdMember.objects.get(
internal_identifier=self.household_member_male.internal_identifier,
registered_subject=self.household_member_male.registered_subject,
household_structure=household_structure)
self.registered_subject_female_annual = self.household_member_female_annual.registered_subject
self.registered_subject_male_annual = self.household_member_male_annual.registered_subject
appointment_female_annual = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__time_point=1)
self.subject_visit_female_annual = SubjectVisitFactory(
report_datetime=datetime.today(),
appointment=appointment_female_annual,
household_member=self.household_member_female_annual)
appointment_male_annual = Appointment.objects.get(
registered_subject=self.registered_subject_male_annual,
visit_definition__time_point=1)
self.subject_visit_male_annual = SubjectVisitFactory(
report_datetime=datetime.today(),
appointment=appointment_male_annual,
household_member=self.household_member_male_annual)
def test_p3(self):
survey = Survey.objects.all()[0]
from bhp066.apps.bcpp_household.models import HouseholdStructure
plot = PlotFactory(community='test_community6',
household_count=1,
status='residential_habitable')
household = Household.objects.get(plot=plot)
signals.post_save.disconnect(household_on_post_save,
weak=False,
dispatch_uid="post_save_on_household")
signals.post_save.disconnect(
household_structure_on_post_save,
weak=False,
dispatch_uid="household_structure_on_post_save")
household_structure = HouseholdStructure.objects.get(
household=household, survey=survey)
representative_eligibility = RepresentativeEligibilityFactory(
household_structure=household_structure)
signals.post_save.connect(household_on_post_save,
weak=False,
dispatch_uid="post_save_on_household")
signals.post_save.connect(
household_structure_on_post_save,
weak=False,
dispatch_uid="household_structure_on_post_save")
household_member = HouseholdMemberFactory(
age_in_years=16,
household_structure=household_structure,
survey=survey)
#loss = EnrollmentLossFactory(household_member = household_member)
print 'get registered subject'
registered_subject = RegisteredSubject.objects.get(
subject_identifier=household_member.registered_subject.
subject_identifier)
from .factories import SubjectRefusalFactory
household_member.member_status = 'REFUSED'
subject_refusal = SubjectRefusalFactory(
household_member=household_member)
SubjectRefusal.objects.get(household_member=household_member).delete()
subject_refusal_history = SubjectRefusalHistory.objects.get(
household_member=household_member)
self.assertEquals(EnrollmentLoss.objects.all().count(), 0)
household_member.member_status = 'BHS_SCREEN'
enrollment_checklist = EnrollmentChecklistFactory(
household_member=household_member,
initials=household_member.initials,
has_identity='No')
self.assertEquals(EnrollmentLoss.objects.all().count(), 1)
#loss = EnrollmentLoss.objects.get(household_member=household_member)
household_member.member_status = 'HTC_ELIGIBLE'
subject_htc = SubjectHtcFactory(household_member=household_member)
self.assertRaises(
ValidationError, lambda: HouseholdInfoFactory(
household_structure=household_structure,
household_member=household_member))
household_member.age_in_years = 19
household_head_eligibility = HeadHouseholdEligibilityFactory(
household_member=household_member)
household_info = HouseholdInfoFactory(
household_structure=household_structure,
household_member=household_member)
subject_absentee = SubjectAbsenteeFactory(
household_member=household_member,
registered_subject=registered_subject)
self.assertEquals(EnrollmentChecklist.objects.all().count(), 0)
subject_undecided = SubjectUndecidedFactory(
household_member=household_member,
registered_subject=registered_subject)
subject_moved = SubjectMovedFactory(
household_member=household_member,
registered_subject=registered_subject)
subject_absentee_entry = SubjectAbsenteeEntryFactory(
subject_absentee=subject_absentee, report_datetime=date.today())
subject_undecided_entry = SubjectUndecidedEntryFactory(
subject_undecided=subject_undecided, report_datetime=date.today())
subject_absentee_entry1 = SubjectAbsenteeEntryFactory(
subject_absentee=subject_absentee,
report_datetime=date.today() + timedelta(days=int(2)))
subject_undecided_entry1 = SubjectUndecidedEntryFactory(
subject_undecided=subject_undecided,
report_datetime=date.today() + timedelta(days=int(2)))
instances = []
instances.append(household_member)
instances.append(registered_subject)
#instances.append(enrollment_checklist)
instances.append(household_structure)
instances.append(household_info)
#instances.append(subject_refusal)
instances.append(subject_htc)
instances.append(subject_refusal_history)
#instances.append(loss)
instances.append(household_head_eligibility)
instances.append(subject_moved)
instances.append(subject_absentee_entry)
instances.append(subject_undecided_entry)
instances.append(subject_absentee_entry1)
instances.append(subject_undecided_entry1)
print 'INSTANCE: ' + str(instances)
for obj in instances:
print 'test natural key on {0}'.format(obj._meta.object_name)
natural_key = obj.natural_key()
get_obj = obj.__class__.objects.get_by_natural_key(*natural_key)
self.assertEqual(obj.pk, get_obj.pk)
# pp = pprint.PrettyPrinter(indent=4)
for obj in instances:
print 'test serializing/deserializing {0}'.format(
obj._meta.object_name)
outgoing_transaction = SerializeToTransaction().serialize(
obj.__class__, obj, False, True, 'default')
# pp.pprint(FieldCryptor('aes', 'local').decrypt(outgoing_transaction.tx))
for transaction in serializers.deserialize(
"json",
FieldCryptor('aes',
'local').decrypt(outgoing_transaction.tx)):
self.assertEqual(transaction.object.pk, obj.pk)
def setUp(self):
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
BcppAppConfiguration().prepare()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
self.study_site = StudySite.objects.get(site_code='01')
self.survey = Survey.objects.all()[0]
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
survey = Survey.objects.all().order_by('datetime_start')[0]
next_survey = Survey.objects.all().order_by('datetime_start')[1]
self.household_structure = HouseholdStructure.objects.get(
household__plot=plot, survey=survey)
self.household_structure_y2 = HouseholdStructure.objects.get(
household__plot=plot, survey=next_survey)
RepresentativeEligibilityFactory(
household_structure=self.household_structure)
RepresentativeEligibilityFactory(
household_structure=self.household_structure_y2)
self.female_dob = date(1989, 10, 10)
self.female_age_in_years = relativedelta(date.today(),
self.female_dob).years
self.female_first_name = 'ERIKA'
self.female_last_name = 'WAXON'
self.female_initials = "EW"
self.household_member_female_T0 = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='F',
age_in_years=self.female_age_in_years,
first_name=self.female_first_name,
initials=self.female_initials)
self.household_member_female_T0.member_status = 'BHS_SCREEN'
self.household_member_female_T0.save()
self.assertEqual(self.household_member_female_T0.member_status,
'BHS_SCREEN')
self.enrollment_checklist_female = EnrollmentChecklistFactory(
household_member=self.household_member_female_T0,
gender='F',
citizen='Yes',
dob=self.female_dob,
guardian='No',
initials=self.household_member_female_T0.initials,
part_time_resident='Yes')
self.subject_consent_female = SubjectConsentFactory(
household_member=self.household_member_female_T0,
study_site=self.study_site,
gender='F',
dob=self.female_dob,
first_name=self.female_first_name,
last_name=self.female_last_name,
initials=self.female_initials)
self.registered_subject_female = RegisteredSubject.objects.get(
subject_identifier=self.subject_consent_female.subject_identifier)
enumeration_helper = EnumerationHelper(
self.household_structure.household, survey, next_survey)
self.household_member_female = enumeration_helper.create_member_on_target(
self.household_member_female_T0)
self.appointment_female = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__code='T1')
self.appointment_female_T0 = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__code='T0')
self.subject_visit_female_T0 = SubjectVisitFactory(
appointment=self.appointment_female_T0,
household_member=self.household_member_female_T0)
self.subject_visit_female = SubjectVisitFactory(
appointment=self.appointment_female,
household_member=self.household_member_female)
self.locator_female_T0 = SubjectLocatorFactory(
subject_visit=self.subject_visit_female_T0,
registered_subject=self.registered_subject_female)
self.residency_mobility_female_T0 = ResidencyMobilityFactory(
subject_visit=self.subject_visit_female_T0)
microtube_panel = Panel.objects.get(name='Microtube')
aliquot_type = AliquotType.objects.all()[0]
self.subject_requisition_T0 = SubjectRequisitionFactory(
subject_visit=self.subject_visit_female_T0,
panel=microtube_panel,
aliquot_type=aliquot_type)
self.hiv_result_today_T0 = HivResultFactory(
subject_visit=self.subject_visit_female_T0, hiv_result=NEG)
def setUp(self):
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
BcppAppConfiguration().prepare()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
survey_T0 = Survey.objects.get(survey_slug='bcpp-year-1')
survey_T1 = Survey.objects.get(survey_slug='bcpp-year-2')
survey_T2 = Survey.objects.get(survey_slug='bcpp-year-3')
self.study_site = StudySite.objects.get(site_code='01')
self.household_structure = HouseholdStructure.objects.get(
household__plot=plot, survey=survey_T0)
self.household_structure_y2 = HouseholdStructure.objects.get(
household__plot=plot, survey=survey_T1)
self.household_structure_y3 = HouseholdStructure.objects.get(
household__plot=plot, survey=survey_T2)
RepresentativeEligibilityFactory(
household_structure=self.household_structure)
RepresentativeEligibilityFactory(
household_structure=self.household_structure_y2)
RepresentativeEligibilityFactory(
household_structure=self.household_structure_y3)
HouseholdMemberFactory(household_structure=self.household_structure)
#HouseholdMemberFactory(household_structure=self.household_structure)
#HouseholdMemberFactory(household_structure=self.household_structure)
male_dob = date.today() - relativedelta(years=25)
male_age_in_years = 25
male_first_name = 'ERIK'
male_initials = "EW"
female_dob = date.today() - relativedelta(years=35)
female_age_in_years = 35
female_first_name = 'ERIKA'
female_initials = "EW"
registered_subject = RegisteredSubjectFactory(
registration_identifier='123456467')
self.household_member_female_T0 = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='F',
age_in_years=female_age_in_years,
first_name=female_first_name,
initials=female_initials,
registered_subject=registered_subject)
registered_subject = RegisteredSubjectFactory(
registration_identifier='123456468')
self.household_member_male_T0 = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='M',
age_in_years=male_age_in_years,
first_name=male_first_name,
initials=male_initials,
registered_subject=registered_subject)
self.household_member_female_T0.member_status = 'BHS_SCREEN'
self.household_member_male_T0.member_status = 'BHS_SCREEN'
self.household_member_female_T0.save()
self.household_member_male_T0.save()
EnrollmentChecklistFactory(
household_member=self.household_member_female_T0,
gender='F',
citizen=YES,
dob=female_dob,
guardian=NO,
initials=self.household_member_female_T0.initials,
part_time_resident=YES)
EnrollmentChecklistFactory(
household_member=self.household_member_male_T0,
gender='M',
citizen=YES,
dob=male_dob,
guardian=NO,
initials=self.household_member_male_T0.initials,
part_time_resident=YES)
subject_consent_female = SubjectConsentFactory(
household_member=self.household_member_female_T0,
confirm_identity='101129811',
identity='101129811',
study_site=self.study_site,
gender='F',
dob=female_dob,
first_name=female_first_name,
initials=female_initials)
subject_consent_male = SubjectConsentFactory(
household_member=self.household_member_male_T0,
confirm_identity='101119811',
identity='101119811',
study_site=self.study_site,
gender='M',
dob=male_dob,
first_name=male_first_name,
initials=male_initials)
self.assertEqual(
HouseholdStructure.objects.filter(
household=self.household_structure.household,
survey=survey_T0,
enumerated=True,
enrolled=True).count(), 1)
enumeration_helper_T2 = EnumerationHelper(
self.household_structure.household, survey_T0, survey_T1)
enumeration_helper_T2.add_members_from_survey()
self.household_member_female = HouseholdMember.objects.get(
internal_identifier=self.household_member_female_T0.
internal_identifier,
household_structure__survey=survey_T1)
self.household_member_male = HouseholdMember.objects.get(
internal_identifier=self.household_member_male_T0.
internal_identifier,
household_structure__survey=survey_T1)
self.assertEqual(
HouseholdStructure.objects.filter(
household=self.household_structure_y2.household,
survey=survey_T1,
enumerated=True,
enrolled=True).count(), 1)
enumeration_helper_T3 = EnumerationHelper(
self.household_structure.household, survey_T1, survey_T2)
enumeration_helper_T3.add_members_from_survey()
self.household_member_female_T2 = HouseholdMember.objects.get(
internal_identifier=self.household_member_female.
internal_identifier,
household_structure__survey=survey_T2)
self.household_member_male_T2 = HouseholdMember.objects.get(
internal_identifier=self.household_member_male.internal_identifier,
household_structure__survey=survey_T2)
self.assertEqual(
HouseholdStructure.objects.filter(
household=self.household_structure_y3.household,
survey=survey_T2,
enumerated=True,
enrolled=True).count(), 1)
self.registered_subject_female = RegisteredSubject.objects.get(
subject_identifier=subject_consent_female.subject_identifier)
self.registered_subject_male = RegisteredSubject.objects.get(
subject_identifier=subject_consent_male.subject_identifier)
self.appointment_female = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__code='T1')
self.appointment_female_T0 = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__code='T0')
self.appointment_female_T2 = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__code='T2')
self.subject_visit_female_T0 = SubjectVisitFactory(
appointment=self.appointment_female_T0,
household_member=self.household_member_female_T0)
self.subject_visit_female = SubjectVisitFactory(
appointment=self.appointment_female,
household_member=self.household_member_female)
self.subject_visit_female_T2 = SubjectVisitFactory(
appointment=self.appointment_female_T2,
household_member=self.household_member_female_T2)
self.appointment_male = Appointment.objects.get(
registered_subject=self.registered_subject_male,
visit_definition__code='T1')
self.appointment_male_T0 = Appointment.objects.get(
registered_subject=self.registered_subject_male,
visit_definition__code='T0')
self.appointment_male_T2 = Appointment.objects.get(
registered_subject=self.registered_subject_male,
visit_definition__code='T2')
self.subject_visit_male_T0 = SubjectVisitFactory(
appointment=self.appointment_male_T0,
household_member=self.household_member_male_T0)
self.subject_visit_male = SubjectVisitFactory(
appointment=self.appointment_male,
household_member=self.household_member_male)
self.subject_visit_male_T2 = SubjectVisitFactory(
appointment=self.appointment_male_T2,
household_member=self.household_member_male_T2)
def test_p3(self):
instances = []
plot = PlotFactory(community='test_community6',
household_count=1,
status='residential_habitable')
household = Household.objects.get(plot=plot)
household_structure = HouseholdStructure.objects.get(
survey=Survey.objects.all()[0])
representative_eligibility = RepresentativeEligibilityFactory(
household_structure=household_structure)
household_member = HouseholdMemberFactory(
household_structure=household_structure)
enrollment_checklist = EnrollmentChecklistFactory(
household_member=household_member,
initials=household_member.initials,
has_identity='Yes',
dob=date(1989, 01, 01))
self.assertTrue(enrollment_checklist.is_eligible)
instances.append(enrollment_checklist)
self.assertEqual(RegisteredSubject.objects.all().count(), 1)
registered_subject = RegisteredSubject.objects.all()[0]
site = StudySite.objects.all()[0]
subject_consent = SubjectConsentFactory(
study_site=site,
household_member=household_member,
registered_subject=household_member.registered_subject,
dob=enrollment_checklist.dob,
initials=enrollment_checklist.initials)
instances.append(subject_consent)
self.assertEqual(Appointment.objects.all().count(), 1)
appointment = Appointment.objects.get(
registered_subject=registered_subject)
subject_visit = SubjectVisitFactory(household_member=household_member,
appointment=appointment)
instances.append(subject_visit)
aliquot_type = AliquotType.objects.all()[0]
panel = Panel.objects.all()[0]
subjects_requisition = SubjectRequisitionFactory(
subject_visit=subject_visit,
panel=panel,
site=site,
aliquot_type=aliquot_type,
)
self.assertEqual(Aliquot.objects.all().count(), 0)
subjects_requisition.is_receive = True
subjects_requisition.is_receive_datetime = datetime.now()
subjects_requisition.save()
lab_profile = site_lab_profiles.get(
subjects_requisition._meta.object_name)
lab_profile().receive(subjects_requisition)
receive = Receive.objects.all()[0]
self.assertEqual(Aliquot.objects.all().count(), 1)
aliquot = Aliquot.objects.all()[0]
processing = ProcessingFactory(profile=AliquotProfile.objects.all()[0],
aliquot=aliquot)
for al in Aliquot.objects.all():
instances.append(al)
instances.append(processing)
instances.append(receive)
self.assertEqual(PackingListItem.objects.all().count(), 0)
packing_list = PackingListFactory(
list_items=aliquot.aliquot_identifier)
instances.append(packing_list)
packing_list.list_items = al.aliquot_identifier
print packing_list.list_items
packing_list.save()
#self.assertEquals(PackingListItem.objects.all().count(), 1)
#instances.append(PackingListItem.objects.all()[0])
print 'INSTANCE: ' + str(instances)
for obj in instances:
print 'test natural key on {0}'.format(obj._meta.object_name)
natural_key = obj.natural_key()
get_obj = obj.__class__.objects.get_by_natural_key(*natural_key)
self.assertEqual(obj.pk, get_obj.pk)
# pp = pprint.PrettyPrinter(indent=4)
for obj in instances:
print 'test serializing/deserializing {0}'.format(
obj._meta.object_name)
outgoing_transaction = SerializeToTransaction().serialize(
obj.__class__, obj, False, True, 'default')
for transaction in serializers.deserialize(
"json",
FieldCryptor('aes',
'local').decrypt(outgoing_transaction.tx)):
self.assertEqual(transaction.object.pk, obj.pk)
def test_p3(self):
print 'get a community name from the mapper classes'
mapper = site_mappers.get_current_mapper()
community = mapper.map_area
print 'No. of SURVEY = ' + str(Survey.objects.all().count())
plot = PlotFactory(community=community, household_count=1, status='residential_habitable')
print 'No. of HOUSEHOLDS = ' + str(Household.objects.all().count())
Household.objects.get(plot=plot)
self.assertEquals(HouseholdStructure.objects.all().count(), 3)
self.assertEquals(Survey.objects.all().count(), 3)
household_structure = HouseholdStructure.objects.get(survey=Survey.objects.all()[0])
RepresentativeEligibilityFactory(household_structure=household_structure)
household_member = HouseholdMemberFactory(household_structure=household_structure)
enrollment_checklist = EnrollmentChecklistFactory(household_member=household_member, initials=household_member.initials, has_identity='Yes', dob=date(1989, 01, 01))
study_site = StudySite.objects.all()[0]
subject_consent = SubjectConsentFactory(study_site=study_site, household_member=household_member, registered_subject=household_member.registered_subject,
dob=enrollment_checklist.dob, initials=enrollment_checklist.initials)
print subject_consent.subject_identifier
print 'get registered subject'
registered_subject = RegisteredSubject.objects.get(subject_identifier=subject_consent.subject_identifier)
instances = []
instances.append(subject_consent)
instances.append(registered_subject)
print 'test natural key / get_by_natural_key on subject_visit'
print 'No. of ENTRIES = ' + str(Entry.objects.all().count())
# content_type = ContentType.objects.get(app_label='bcpp_subject', model='subjectvisit')
# content_type_map = ContentTypeMap.objects.get(content_type=content_type)
self.assertEqual(VisitDefinition.objects.all().count(), 2)
visit_definition = VisitDefinition.objects.get(code='T0')
print 'No. of Appointments = ' + str(Appointment.objects.all().count())
appointment = Appointment.objects.get(visit_definition=visit_definition)
# print 'No. of ScheduledEntryMetaData before Visit = '+str(ScheduledEntryMetaData.objects.all().count())
subject_visit = SubjectVisitFactory(appointment=appointment, household_member=household_member)
signals.post_save.disconnect(entry_meta_data_on_post_save, weak=False, dispatch_uid="entry_meta_data_on_post_save")
aliquot_type = AliquotType.objects.all()[0]
site = StudySite.objects.all()[0]
microtube_panel = Panel.objects.get(name='Microtube')
requisition1 = SubjectRequisitionFactory(subject_visit=subject_visit, panel=microtube_panel, aliquot_type=aliquot_type, site=site)
# print requisition1.aliquot_type.numeric_code
elisa_panel = Panel.objects.get(name='ELISA')
requisition2 = SubjectRequisitionFactory(subject_visit=subject_visit, panel=elisa_panel, aliquot_type=aliquot_type, site=site)
signals.post_save.connect(entry_meta_data_on_post_save, weak=False, dispatch_uid="entry_meta_data_on_post_save")
subject_locator = SubjectLocatorFactory(subject_visit=subject_visit, registered_subject=registered_subject)
year_1_survey = Survey.objects.get(survey_slug='bcpp-year-1')
call_list = CallListFactory(household_member=household_member, label='call_label_1')
call_log = CallLogFactory(household_member=household_member, survey=year_1_survey, label='call_label_1')
call_log2 = CallLogFactory(household_member=household_member, survey=year_1_survey, label='call_label_2')
call_log_entry = CallLogEntryFactory(call_log=call_log, survey=year_1_survey, call_datetime=datetime.now())
call_log_entry2 = CallLogEntryFactory(call_log=call_log, survey=year_1_survey, call_datetime=datetime.now() + timedelta(minutes=3))
instances.append(subject_locator)
instances.append(requisition1)
instances.append(requisition2)
instances.append(call_log)
instances.append(call_log2)
instances.append(call_log_entry)
instances.append(call_log_entry2)
instances.append(call_list)
print 'INSTANCE: ' + str(instances)
for obj in instances:
print 'test natural key on {0}'.format(obj._meta.object_name)
natural_key = obj.natural_key()
get_obj = obj.__class__.objects.get_by_natural_key(*natural_key)
self.assertEqual(obj.pk, get_obj.pk)
# pp = pprint.PrettyPrinter(indent=4)
for obj in instances:
print 'test serializing/deserializing {0}'.format(obj._meta.object_name)
outgoing_transaction = SerializeToTransaction().serialize(obj.__class__, obj, False, True, 'default')
# pp.pprint(FieldCryptor('aes', 'local').decrypt(outgoing_transaction.tx))
for transaction in serializers.deserialize("json", FieldCryptor('aes', 'local').decrypt(outgoing_transaction.tx)):
self.assertEqual(transaction.object.pk, obj.pk)
def setUp(self):
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
BcppAppConfiguration().prepare()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
survey = Survey.objects.all().order_by('datetime_start')[0]
self.study_site = StudySite.objects.get(site_code='14')
self.household_structure = HouseholdStructure.objects.get(
household__plot=plot, survey=survey)
RepresentativeEligibilityFactory(
household_structure=self.household_structure)
HouseholdMemberFactory(household_structure=self.household_structure)
self.male_dob = date.today() - relativedelta(years=25)
self.male_age_in_years = 25
self.male_first_name = 'ERIK'
self.male_initials = "EW"
female_dob = date.today() - relativedelta(years=35)
female_age_in_years = 35
female_first_name = 'ERIKA'
female_initials = "EW"
self.household_member_female_T0 = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='F',
age_in_years=female_age_in_years,
first_name=female_first_name,
initials=female_initials)
self.household_member_male_T0 = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='M',
age_in_years=self.male_age_in_years,
first_name=self.male_first_name,
initials=self.male_initials)
EnrollmentChecklistFactory(
household_member=self.household_member_male_T0,
gender='M',
citizen='Yes',
dob=self.male_dob,
guardian='No',
initials=self.household_member_male_T0.initials,
part_time_resident='Yes')
EnrollmentChecklistFactory(
household_member=self.household_member_female_T0,
gender='F',
citizen='Yes',
dob=female_dob,
guardian='No',
initials=self.household_member_female_T0.initials,
part_time_resident='Yes')
subject_consent_female = SubjectConsentFactory(
household_member=self.household_member_female_T0,
study_site=self.study_site,
gender='F',
dob=female_dob,
first_name=female_first_name,
initials=female_initials)
self.subject_consent_male = SubjectConsentFactory(
household_member=self.household_member_male_T0,
study_site=self.study_site,
gender='M',
dob=self.male_dob,
first_name=self.male_first_name,
initials=self.male_initials)
self.registered_subject_male = RegisteredSubject.objects.get(
subject_identifier=self.subject_consent_male.subject_identifier)
self.registered_subject_female = RegisteredSubject.objects.get(
subject_identifier=subject_consent_female.subject_identifier)
self.appointment_male_T0 = Appointment.objects.get(
registered_subject=self.registered_subject_male,
visit_definition__code='T0')
self.appointment_female_T0 = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__code='T0')
self.subject_visit_male_T0 = SubjectVisitFactory(
appointment=self.appointment_male_T0,
household_member=self.household_member_male_T0)
self.subject_visit_female_T0 = SubjectVisitFactory(
appointment=self.appointment_female_T0,
household_member=self.household_member_female_T0)
Quota.objects.create(app_label='bcpp_subject',
model_name='PimaVl',
target=1,
expires_datetime=timezone.now() +
timedelta(days=1))
self.assertEqual(1, Quota.objects.all().count())
def setUp(self):
site_mappers.autodiscover()
from bhp066.apps.bcpp_subject.visit_schedule import BcppSubjectVisitSchedule
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
self.app_config = BcppAppConfiguration()
self.app_config.prepare()
self.app_config.prep_survey_for_tests()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
self.survey_bhs = Survey.objects.get(survey_slug='bcpp-year-1')
self.survey_ahs = Survey.objects.get(survey_slug='bcpp-year-2')
self.study_site = StudySite.objects.get(site_code='01')
self.household_structure_bhs = HouseholdStructure.objects.get(
household__plot=plot, survey=self.survey_bhs)
self.household_structure_ahs = HouseholdStructure.objects.get(
household__plot=plot, survey=self.survey_ahs)
self.create_household_log_entry(self.household_structure_bhs)
RepresentativeEligibilityFactory(
household_structure=self.household_structure_bhs)
self.male_dob = date.today() - relativedelta(years=25)
self.male_age_in_years = 25
self.male_first_name = 'ERIK'
self.male_last_name = 'HIEWAI'
self.male_initials = "EW"
self.household_member_male_T0 = HouseholdMemberFactory(
household_structure=self.household_structure_bhs,
gender='M',
age_in_years=self.male_age_in_years,
first_name=self.male_first_name,
initials=self.male_initials)
HeadHouseholdEligibilityFactory(
household_member=self.household_member_male_T0,
household_structure=self.household_structure_bhs)
self.household_member_male_T0.eligible_hoh = True
self.household_member_male_T0.save()
HouseholdInfoFactory(household_member=self.household_member_male_T0,
household_structure=self.household_structure_bhs,
registered_subject=self.household_member_male_T0.
registered_subject)
self.enrollment = EnrollmentChecklistFactory(
household_member=self.household_member_male_T0,
gender='M',
citizen='Yes',
dob=self.male_dob,
guardian='No',
initials=self.household_member_male_T0.initials,
part_time_resident='Yes')
self.subject_consent_male = SubjectConsentFactory(
household_member=self.household_member_male_T0,
confirm_identity='101119811',
identity='101119811',
study_site=self.study_site,
gender='M',
dob=self.male_dob,
first_name=self.male_first_name,
initials=self.male_initials)
self.data = {
'last_name':
'WIZZY',
'is_minor':
'No',
'witness_name':
None,
'is_literate':
'Yes',
'subject_type':
'subject',
'consent_copy':
'Yes',
'is_verified':
False,
'consent_signature':
None,
'first_name':
'ERIK',
'dm_comment':
None,
'is_dob_estimated':
None,
'verified_by':
None,
'user_modified':
u'',
'is_signed':
True,
'is_verified_datetime':
None,
'subject_identifier_aka':
None,
'version':
u'4',
'citizen':
'Yes',
'legal_marriage':
u'N/A',
'assessment_score':
'Yes',
'is_incarcerated':
'No',
'consent_reviewed':
'Yes',
'study_questions':
'Yes',
'sid':
None,
'study_site_id':
self.study_site.id,
'may_store_samples':
YES,
'consent_version_recent':
None,
'subject_identifier':
self.household_member_male_T0.registered_subject.
subject_identifier,
'subject_identifier_as_pk':
self.household_member_male_T0.registered_subject.id,
'community':
u'test_community',
'using':
'default',
'marriage_certificate_no':
None,
'identity':
'317918515',
'confirm_identity':
'317918515',
'registered_subject_id':
self.household_member_male_T0.registered_subject.id,
'identity_type':
'OMANG',
'language':
u'not specified',
'guardian_name':
None,
'gender':
'M',
'household_member':
self.household_member_male_T0.id,
'marriage_certificate':
u'N/A',
'dob':
self.male_dob,
'study_site':
self.study_site.id,
'initials':
'EW',
'language':
'en',
'is_dob_estimated':
'-',
'consent_signature':
YES,
'consent_datetime':
datetime.today(),
'version':
1
}
def create_baseline(self, household):
household_structure = HouseholdStructure.objects.get(
household=household, survey=self.survey1)
self.household_structure = household_structure
RepresentativeEligibilityFactory(
household_structure=household_structure)
# HouseholdMemberFactory(household_structure=household_structure)
# HouseholdMemberFactory(household_structure=household_structure)
# HouseholdMemberFactory(household_structure=household_structure)
HouseholdMember = get_model('bcpp_household_member', 'HouseholdMember')
self.household_member_female = HouseholdMember.objects.create(
household_structure=household_structure,
first_name='SUE',
initials='SW',
gender='F',
age_in_years=25,
study_resident='Yes',
relation='sister',
inability_to_participate=NOT_APPLICABLE)
self.household_member_male = HouseholdMember.objects.create(
household_structure=household_structure,
first_name='ERIK',
initials='EW',
gender='M',
age_in_years=25,
study_resident='Yes',
relation='brother',
inability_to_participate=NOT_APPLICABLE)
# self.household_member_female.save()
# self.household_member_male.save()
enrollment_male = EnrollmentChecklistFactory(
household_member=self.household_member_male,
initials=self.household_member_male.initials,
gender=self.household_member_male.gender,
dob=date.today() -
relativedelta(years=self.household_member_male.age_in_years),
guardian=NOT_APPLICABLE,
part_time_resident='Yes',
citizen='Yes')
self.household_member_female = HouseholdMember.objects.get(
pk=self.household_member_female.pk)
enrollment_female = EnrollmentChecklistFactory(
household_member=self.household_member_female,
initials=self.household_member_female.initials,
gender=self.household_member_female.gender,
dob=date.today() -
relativedelta(years=self.household_member_female.age_in_years),
guardian=NOT_APPLICABLE,
part_time_resident='Yes',
citizen='Yes')
self.household_member_male = HouseholdMember.objects.get(
pk=self.household_member_male.pk)
subject_consent_female = SubjectConsentFactory(
consent_datetime=datetime.today(),
household_member=self.household_member_female,
registered_subject=self.household_member_female.registered_subject,
gender='F',
dob=enrollment_female.dob,
first_name='SUE',
last_name='W',
citizen='Yes',
confirm_identity='101129811',
identity='101129811',
initials=enrollment_female.initials,
study_site=self.study_site)
subject_consent_male = SubjectConsentFactory(
consent_datetime=datetime.today(),
household_member=self.household_member_male,
registered_subject=self.household_member_male.registered_subject,
gender='M',
dob=enrollment_male.dob,
first_name=self.household_member_male.first_name,
last_name='W',
citizen='Yes',
confirm_identity='101119811',
identity='101119811',
initials=enrollment_male.initials,
study_site=self.study_site)
# FIXME: need this to be fixed, not getting gender right!
self.registered_subject_female = RegisteredSubject.objects.get(
subject_identifier=subject_consent_female.subject_identifier)
self.registered_subject_male = RegisteredSubject.objects.get(
subject_identifier=subject_consent_male.subject_identifier)
appointment_female = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__time_point=0)
self.subject_visit_female = SubjectVisitFactory(
report_datetime=datetime.today(),
appointment=appointment_female,
household_member=self.household_member_female)
appointment_male = Appointment.objects.get(
registered_subject=self.registered_subject_male,
visit_definition__time_point=0)
self.subject_visit_male = SubjectVisitFactory(
report_datetime=datetime.today(),
appointment=appointment_male,
household_member=self.household_member_male)
def setUp(self):
site_mappers.autodiscover()
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
mapper = site_mappers._registry_by_code.get('01')
mapper.survey_dates = {
'bcpp-year-1':
SurveyDatesTuple(name='bhs',
start_date=date.today() +
relativedelta(years=-1) + relativedelta(days=-89),
full_enrollment_date=date.today() +
relativedelta(years=-1) + relativedelta(days=60),
end_date=date.today() + relativedelta(years=-1) +
relativedelta(days=89),
smc_start_date=date.today() +
relativedelta(years=-1) + relativedelta(days=89)),
'bcpp-year-2':
SurveyDatesTuple(name='t1',
start_date=date.today() + relativedelta(years=0) +
relativedelta(days=-89),
full_enrollment_date=date.today() +
relativedelta(years=0) + relativedelta(days=60),
end_date=date.today() + relativedelta(years=0) +
relativedelta(days=89),
smc_start_date=date.today() +
relativedelta(years=0) + relativedelta(days=89)),
}
bcpp_app_configuration.survey_setup = {
'bcpp-year-1': {
'survey_name':
'BCPP Year 1',
'survey_slug':
'bcpp-year-1',
'datetime_start':
datetime.today() + relativedelta(years=-1) +
relativedelta(days=-30),
'datetime_end':
datetime.today() + relativedelta(years=-1) +
relativedelta(days=30)
},
'bcpp-year-2': {
'survey_name': 'BCPP Year 2',
'survey_slug': 'bcpp-year-2',
'datetime_start': datetime.today() + relativedelta(days=-90),
'datetime_end': datetime.today() + relativedelta(days=90)
},
'bcpp-year-3': {
'survey_name':
'BCPP Year 3',
'survey_slug':
'bcpp-year-3',
'datetime_start':
datetime.today() + relativedelta(years=1) +
relativedelta(days=-30),
'datetime_end':
datetime.today() + relativedelta(years=1) +
relativedelta(days=30)
},
}
bcpp_app_configuration.prepare()
site_lab_tracker.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
self.survey2 = Survey.objects.current_survey()
self.survey1 = Survey.objects.previous_survey()
plot = PlotFactory(community='test_community',
household_count=1,
status='residential_habitable')
self.household = Household.objects.get(plot=plot)
self.source_household_structure = HouseholdStructure.objects.get(
household=self.household, survey=self.survey1)
self.target_household_structure = HouseholdStructure.objects.get(
household=self.household, survey=self.survey2)
self.representative_eligibility = RepresentativeEligibilityFactory(
household_structure=self.source_household_structure)
self.study_site = StudySite.objects.get(
site_code=site_mappers.get_current_mapper().map_code)
self.intervention = site_mappers.get_current_mapper().intervention
# add members to source
HouseholdMemberFactory(
household_structure=self.source_household_structure)
HouseholdMemberFactory(
household_structure=self.source_household_structure)
HouseholdMemberFactory(
household_structure=self.source_household_structure)
HouseholdMemberFactory(
household_structure=self.source_household_structure)
HouseholdMemberFactory(
household_structure=self.source_household_structure)
def setUp(self):
site_mappers.autodiscover()
from bhp066.apps.bcpp_subject.visit_schedule import BcppSubjectVisitSchedule
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
self.app_config = BcppAppConfiguration()
self.app_config.prepare()
self.app_config.prep_survey_for_tests()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
self.survey_bhs = Survey.objects.get(survey_slug='bcpp-year-1')
self.survey_ahs = Survey.objects.get(survey_slug='bcpp-year-2')
self.study_site = StudySite.objects.get(site_code='01')
self.household_structure_bhs = HouseholdStructure.objects.get(
household__plot=plot, survey=self.survey_bhs)
self.household_structure_ahs = HouseholdStructure.objects.get(
household__plot=plot, survey=self.survey_ahs)
self.create_household_log_entry(self.household_structure_bhs)
RepresentativeEligibilityFactory(
household_structure=self.household_structure_bhs)
self.male_dob = date.today() - relativedelta(years=25)
self.male_age_in_years = 25
self.male_first_name = 'ERIK'
self.male_last_name = 'HIEWAI'
self.male_initials = "EW"
self.household_member_male_T0 = HouseholdMemberFactory(
household_structure=self.household_structure_bhs,
gender='M',
age_in_years=self.male_age_in_years,
first_name=self.male_first_name,
initials=self.male_initials)
HeadHouseholdEligibilityFactory(
household_member=self.household_member_male_T0,
household_structure=self.household_structure_bhs)
self.household_member_male_T0.eligible_hoh = True
self.household_member_male_T0.save()
HouseholdInfoFactory(household_member=self.household_member_male_T0,
household_structure=self.household_structure_bhs,
registered_subject=self.household_member_male_T0.
registered_subject)
self.enrollment = EnrollmentChecklistFactory(
household_member=self.household_member_male_T0,
gender='M',
citizen='Yes',
dob=self.male_dob,
guardian='No',
initials=self.household_member_male_T0.initials,
part_time_resident='Yes')
self.subject_consent_male = SubjectConsentFactory(
household_member=self.household_member_male_T0,
confirm_identity='101119811',
identity='101119811',
study_site=self.study_site,
gender='M',
dob=self.male_dob,
first_name=self.male_first_name,
initials=self.male_initials)
self.appointment = Appointment.objects.get(
registered_subject=self.household_member_male_T0.
registered_subject,
visit_definition__code='T0')
self.subject_visit = SubjectVisitFactory(
household_member=self.household_member_male_T0,
appointment=self.appointment)
self.registered_subject = RegisteredSubject.objects.get(
subject_identifier=self.subject_consent_male.subject_identifier)
self.sexual_data = {
'subject_visit': self.subject_visit.id,
'alcohol_sex': 'Myself',
'report_datetime': datetime.today(),
'condom': NO,
'more_sex': NO,
'ever_sex': YES,
'first_sex': 20,
'last_year_partners': None,
'lifetime_sex_partners': 1,
'more_sex': None,
'subject_visit_id': None,
'user_modified': u'',
}
self.data = {
'subject_visit': self.subject_visit.id,
'concurrent': NO,
'first_partner_live': None,
'first_condom_freq': u'Sometimes',
'first_disclose': u'Yes',
'first_exchange': u'30-39',
'first_first_sex': u'Years',
'first_first_sex_calc': 3L,
'first_haart': None,
'first_partner_arm': None,
'first_partner_cp': u'No',
'first_partner_hiv': u'not_sure',
'first_relationship': u'Long-term partner',
'first_sex_current': u'Yes',
'first_sex_freq': None,
'goods_exchange': u'No',
'partner_hiv_test': u'not_sure',
'past_year_sex_freq': u'About once a month',
'report_datetime': datetime.today(),
'sex_partner_community': u'N/A',
'subject_visit_id': None,
'third_last_sex': u'Days',
'third_last_sex_calc': 7L,
'user_modified': u''
}