def test_Parser(self):
"""test the functioning of the parser"""
parser = XMLParser()
if parser.isAvailable():
source = open(setup.MEDLINE_TEST_XML, 'r').read()
self.failUnless(source)
entries = TestEntries(parser.getEntries(source))
# are there enough entries?
self.failUnless(len(entries) == 4)
# are there the right number of authors?
self.failUnless(len(entries.author_last_names()) == 13)
# test individual name parsings:
# lastname, one initial
this_entry = entries.entryByTitle("Molecular genetic evidence for parthenogenesis in the Burmese python, Python molurus bivittatus.")
expected_author = {"firstname": "E.", "middlename": "","lastname": "Bruins"}
self.failUnless(this_entry.authorIsPresent(expected_author), "author: %s is not listed" % expected_author)
# lastname, more than one initial
expected_author = {"firstname": "T.", "middlename": "V. M.","lastname": "Groot"}
self.failUnless(this_entry.authorIsPresent(expected_author), "author: %s is not listed" % expected_author)
# lastname, firstname, middle initial
this_entry = entries.entryByTitle("Pharmacokinetics and tissue concentrations of azithromycin in ball pythons (Python regius).")
expected_author = {"firstname": "Robert", "middlename": "P.","lastname": "Hunter"}
self.failUnless(this_entry.authorIsPresent(expected_author), "author: %s is not listed" % expected_author)
else:
print """\nOne or more transformationtool was not found!
please make sure bibutils is installed to run all tests. """
print ("-" * 20) + "\n"
def test_Parser(self):
"""test the functioning of the parser"""
parser = XMLParser()
if parser.isAvailable():
source = open(setup.MEDLINE_TEST_XML, 'r').read()
self.failUnless(source)
entries = TestEntries(parser.getEntries(source))
# are there enough entries?
self.failUnless(len(entries) == 4)
# are there the right number of authors?
self.failUnless(len(entries.author_last_names()) == 13)
# test individual name parsings:
# lastname, one initial
this_entry = entries.entryByTitle(
"Molecular genetic evidence for parthenogenesis in the Burmese python, Python molurus bivittatus."
)
expected_author = {
"firstname": "E.",
"middlename": "",
"lastname": "Bruins"
}
self.failUnless(this_entry.authorIsPresent(expected_author),
"author: %s is not listed" % expected_author)
# lastname, more than one initial
expected_author = {
"firstname": "T.",
"middlename": "V. M.",
"lastname": "Groot"
}
self.failUnless(this_entry.authorIsPresent(expected_author),
"author: %s is not listed" % expected_author)
# lastname, firstname, middle initial
this_entry = entries.entryByTitle(
"Pharmacokinetics and tissue concentrations of azithromycin in ball pythons (Python regius)."
)
expected_author = {
"firstname": "Robert",
"middlename": "P.",
"lastname": "Hunter"
}
self.failUnless(this_entry.authorIsPresent(expected_author),
"author: %s is not listed" % expected_author)
else:
print """\nOne or more transformationtool was not found!
please make sure bibutils is installed to run all tests. """
print("-" * 20) + "\n"
def test_import(self):
source = open(setup.MEDLINE_TEST_MED, 'r').read()
self.failUnless(source)
parser = MedlineParser()
entries = TestEntries(parser.getEntries(source))
self.failUnless(len(entries) == 4)
expected_author_last_names = ("Groot","Bruins","Breeuwer","Alibardi",\
"Thompson","Coke","Hunter","Isaza",\
"Koch","Goatley","Carpenter",\
"Trape","Mane",)
parsed_author_last_names = entries.author_last_names()
for name in expected_author_last_names:
self.failUnless(name in parsed_author_last_names,
'Parse failed - missing author %s' % name)
def test_import(self):
source = open(setup.MEDLINE_TEST_MED, 'r').read()
self.failUnless(source)
parser = MedlineParser()
entries = TestEntries(parser.getEntries(source))
self.failUnless(len(entries) == 4)
expected_author_last_names = ("Groot","Bruins","Breeuwer","Alibardi",\
"Thompson","Coke","Hunter","Isaza",\
"Koch","Goatley","Carpenter",\
"Trape","Mane",)
parsed_author_last_names = entries.author_last_names()
for name in expected_author_last_names:
self.failUnless(name in parsed_author_last_names,
'Parse failed - missing author %s' % name)
def test_Parser(self):
"""test the functioning of the parser"""
parser = RISParser()
if parser.isAvailable():
source = open(setup.RIS_SOURCE, 'r').read()
self.failUnless(source)
entries = TestEntries(parser.getEntries(source))
self.failUnless(len(entries) == 7)
self.failUnless(
'Markets and Municipalities: A Study of the Behavior of the Danish Municipalities'
in entries.titles())
entry = entries.entries[0]
self.failUnless(entry.pages == '79--102')
self.failUnless(entry.volume == '114')
self.failUnless(entry.number == '1 - 2')
self.failUnless(entry.publication_year == '2003')
self.failUnless(entry.journal == 'Public Choice')
# XXX This test could be adjusted if the parser got smarter about
# about converting 'Mar.' into 'March'
## rr: which it did inbetween it seems because I had to add
## the fully spelled out month names to the 'month_mapper' dict.
self.failUnless(entry.publication_month == '01')
entry_authors = entries.entries[0].authors
self.failUnless(len(entry_authors) == 2)
self.failUnless(entry_authors[0]['lastname'] == 'Christoffersen')
self.failUnless(entry_authors[0]['firstname'] == 'Henrik')
self.failUnless(entry_authors[0]['middlename'] == '')
self.failUnless(entry_authors[1]['lastname'] == 'Paldam')
self.failUnless(entry_authors[1]['firstname'] == 'Martin')
self.failUnless(entry_authors[1]['middlename'] == '')
last_entry = entries.entries[-1]
self.assertEqual(last_entry.authors[1]['lastname'],
u'M\xfcller'.encode('utf-8'))
else:
print """\nOne or more transformationtool was not found!
please make sure bibutils is installed to run all tests. """
print("-" * 20) + "\n"
def test_parser_with_umlauts(self):
parser = XMLParser()
if parser.isAvailable():
source = open(setup.UMLAUTS_TEST_XML, 'r').read()
self.failUnless(source)
entries = TestEntries(parser.getEntries(source))
self.failUnless(len(entries) == 1)
entry = entries.entries[0]
self.assertEqual(entry.publisher,
u'Übersöpf Verlag'.encode('utf-8'))
def test_import(self):
if self.parser.isAvailable():
source = open(setup.ENDNOTE_TEST_SOURCE, 'r').read()
self.failUnless(source)
entries = TestEntries(self.parser.getEntries(source))
self.failUnless(len(entries) == 2)
expected_author_last_names = ('Dufour', 'Fieschi', 'Hergon',
'Joubert', 'Raps', 'Staccini',)
parsed_author_last_names = entries.author_last_names()
for name in expected_author_last_names:
self.failUnless(name in parsed_author_last_names,
'Parse failed - missing author %s' % name)
expected_titles = ('Combining advanced networked technology and pedagogical methods to improve collaborative distance learning',
'Collaborative and workflow-oriented digital portfolio: Creating a web-based tool to support a nationwide program of practices evaluation in the blood transfusion area',)
parsed_titles = [e.title for e in entries.entries]
for title in expected_titles:
self.failUnless(title in parsed_titles,
'Parse failed - missing expected title "%s"' %
title)
# Keywords - first entry in sample file has none, second has 9
self.failIf(hasattr(entries.entries[0],'keywords')
and entries.entries[0].keywords,
'Parsed non existing keywords')
self.failUnless(len(entries.entries[1].keywords) == 9)
# Confirm a few w/ tricky characters survived the parse
kwds = ["Health Services Research/ organization & administration",
"Primary Health Care/ standards",
"Program Evaluation",
"Quality Assurance, Health Care"]
for keyword in kwds:
self.failUnless(keyword in entries.entries[1].keywords,
"Failed to correctly parse keyword: '%s'" % keyword)
else:
print """\nOne or more transformationtool was not found!
please make sure bibutils is installed to run all tests. """
print ("-" * 20) + "\n"
def test_Parser(self):
"""test the functioning of the parser"""
parser = RISParser()
if parser.isAvailable():
source = open(setup.RIS_SOURCE, 'r').read()
self.failUnless(source)
entries = TestEntries(parser.getEntries(source))
self.failUnless( len(entries) == 7 )
self.failUnless( 'Markets and Municipalities: A Study of the Behavior of the Danish Municipalities' in entries.titles())
entry = entries.entries[0]
self.failUnless( entry.pages == '79--102' )
self.failUnless( entry.volume == '114' )
self.failUnless( entry.number == '1 - 2' )
self.failUnless( entry.publication_year == '2003' )
self.failUnless( entry.journal == 'Public Choice' )
# XXX This test could be adjusted if the parser got smarter about
# about converting 'Mar.' into 'March'
## rr: which it did inbetween it seems because I had to add
## the fully spelled out month names to the 'month_mapper' dict.
self.failUnless( entry.publication_month == '01' )
entry_authors = entries.entries[0].authors
self.failUnless( len( entry_authors ) == 2 )
self.failUnless( entry_authors[0]['lastname'] == 'Christoffersen' )
self.failUnless( entry_authors[0]['firstname'] == 'Henrik' )
self.failUnless( entry_authors[0]['middlename'] == '' )
self.failUnless( entry_authors[1]['lastname'] == 'Paldam' )
self.failUnless( entry_authors[1]['firstname'] == 'Martin' )
self.failUnless( entry_authors[1]['middlename'] == '' )
last_entry = entries.entries[-1]
self.assertEqual(last_entry.authors[1]['lastname'], u'M\xfcller'.encode('utf-8'))
else:
print """\nOne or more transformationtool was not found!
please make sure bibutils is installed to run all tests. """
print ("-" * 20) + "\n"
