def workflow_action_retract_ar(self):
# AR should be retracted
# Can't transition inactive ARs
if not api.is_active(self.context):
message = _('Item is inactive.')
self.context.plone_utils.addPortalMessage(message, 'info')
self.request.response.redirect(self.context.absolute_url())
return
# 1. Copies the AR linking the original one and viceversa
ar = self.context
newar = self.cloneAR(ar)
# 2. The old AR gets a status of 'invalid'
api.do_transition_for(ar, 'retract_ar')
# 3. The new AR copy opens in status 'to be verified'
changeWorkflowState(newar, 'bika_ar_workflow', 'to_be_verified')
# 4. The system immediately alerts the client contacts who ordered
# the results, per email and SMS, that a possible mistake has been
# picked up and is under investigation.
# A much possible information is provided in the email, linking
# to the AR online.
bika_setup = api.get_bika_setup()
if bika_setup.getNotifyOnARRetract():
self.notify_ar_retract(ar, newar)
message = _('${items} invalidated.', mapping={'items': ar.getId()})
self.context.plone_utils.addPortalMessage(message, 'warning')
self.request.response.redirect(newar.absolute_url())
def workflow_action_retract_ar(self):
# AR should be retracted
# Can't transition inactive ARs
if not api.is_active(self.context):
message = _('Item is inactive.')
self.context.plone_utils.addPortalMessage(message, 'info')
self.request.response.redirect(self.context.absolute_url())
return
# 1. Copies the AR linking the original one and viceversa
ar = self.context
newar = self.cloneAR(ar)
# 2. The old AR gets a status of 'invalid'
api.do_transition_for(ar, 'retract_ar')
# 3. The new AR copy opens in status 'to be verified'
changeWorkflowState(newar, 'bika_ar_workflow', 'to_be_verified')
# 4. The system immediately alerts the client contacts who ordered
# the results, per email and SMS, that a possible mistake has been
# picked up and is under investigation.
# A much possible information is provided in the email, linking
# to the AR online.
bika_setup = api.get_bika_setup()
if bika_setup.getNotifyOnARRetract():
self.notify_ar_retract(ar, newar)
message = _('${items} invalidated.',
mapping={'items': ar.getRequestID()})
self.context.plone_utils.addPortalMessage(message, 'warning')
self.request.response.redirect(newar.absolute_url())
def idserver_generate_id(context, prefix, batch_size=None):
""" Generate a new id using external ID server.
"""
plone = context.portal_url.getPortalObject()
url = api.get_bika_setup().getIDServerURL()
try:
if batch_size:
# GET
f = urllib.urlopen('%s/%s/%s?%s' %
(url, plone.getId(), prefix,
urllib.urlencode({'batch_size': batch_size})))
else:
f = urllib.urlopen('%s/%s/%s' % (url, plone.getId(), prefix))
new_id = f.read()
f.close()
except:
from sys import exc_info
info = exc_info()
zLOG.LOG(
'INFO', 0, '',
'generate_id raised exception: %s, %s \n ID server URL: %s' %
(info[0], info[1], url))
raise IDServerUnavailable(_('ID Server unavailable'))
return new_id
def idserver_generate_id(context, prefix, batch_size=None):
""" Generate a new id using external ID server.
"""
plone = context.portal_url.getPortalObject()
url = api.get_bika_setup().getIDServerURL()
try:
if batch_size:
# GET
f = urllib.urlopen('%s/%s/%s?%s' % (
url,
plone.getId(),
prefix,
urllib.urlencode({'batch_size': batch_size}))
)
else:
f = urllib.urlopen('%s/%s/%s' % (url, plone.getId(), prefix))
new_id = f.read()
f.close()
except:
from sys import exc_info
info = exc_info()
msg = 'generate_id raised exception: {}, {} \n ID server URL: {}'
msg = msg.format(info[0], info[1], url)
zLOG.LOG('INFO', 0, '', msg)
raise IDServerUnavailable(_('ID Server unavailable'))
return new_id
def workflow_action_invalidate(self):
# AR should be retracted
# Can't transition inactive ARs
if not api.is_active(self.context):
message = _('Item is inactive.')
self.context.plone_utils.addPortalMessage(message, 'info')
self.request.response.redirect(self.context.absolute_url())
return
# Retract the AR and get the retest
api.do_transition_for(self.context, 'invalidate')
retest = self.context.getRetest()
# 4. The system immediately alerts the client contacts who ordered
# the results, per email and SMS, that a possible mistake has been
# picked up and is under investigation.
# A much possible information is provided in the email, linking
# to the AR online.
bika_setup = api.get_bika_setup()
if bika_setup.getNotifyOnARRetract():
self.notify_ar_retract(self.context, retest)
message = _('${items} invalidated.',
mapping={'items': self.context.getId()})
self.context.plone_utils.addPortalMessage(message, 'warning')
self.request.response.redirect(retest.absolute_url())
def __init__(self, context, request):
BaseView.__init__(self, context, request)
self.context = context
self.request = request
self.analyst = None
self.instrument = None
self.contentFilter = {
'getWorksheetUID': context.UID(),
'sort_on': 'sortable_title'
}
self.sort_on = 'sortable_title'
self.icon = self.portal_url + "/++resource++bika.lims.images/worksheet_big.png"
self.allow_edit = True
self.show_categories = False
self.expand_all_categories = False
self.columns = {
'Pos': {'title': _('Position')},
'DueDate': {'title': _('Due Date')},
'Service': {'title': _('Analysis')},
'Method': {'title': _('Method')},
'DetectionLimit': {
'title': _('DL'),
'sortable': False,
'toggle': False},
'Result': {'title': _('Result'),
'input_width': '6',
'input_class': 'ajax_calculate numeric',
'sortable': False},
'Uncertainty': {'title': _('+-')},
'retested': {'title': "<img src='++resource++bika.lims.images/retested.png' title='%s'/>" % _('Retested'),
'type':'boolean'},
'Attachments': {'title': _('Attachments')},
'Instrument': {'title': _('Instrument')},
'state_title': {'title': _('State')},
}
self.review_states = [
{'id':'default',
'title': _('All'),
'contentFilter':{},
'transitions': [{'id':'submit'},
{'id':'verify'},
{'id':'retract'},
{'id':'unassign'}],
'columns':['Pos',
'Service',
'Method',
'Instrument',
'DetectionLimit',
'Result',
'Uncertainty',
'DueDate',
'state_title',
'Attachments']
},
]
self.bika_setup = api.get_bika_setup()
self.uids_strpositions = self.get_uids_strpositions()
self.items_rowspans = dict()
def rename_bika_setup():
"""
Rename Bika Setup to just Setup to avoid naming confusions for new users
"""
logger.info("Renaming Bika Setup...")
bika_setup = api.get_bika_setup()
bika_setup.setTitle("Setup")
bika_setup.reindexObject()
setup = api.get_portal().portal_setup
setup.runImportStepFromProfile('profile-bika.lims:default', 'controlpanel')
def setup_control_panels(portal):
"""Setup Plone control and Senaite management panels
"""
logger.info("*** Setup Control Panels ***")
# get the bika_setup object
bika_setup = api.get_bika_setup()
cp = api.get_tool("portal_controlpanel")
def get_action_index(action_id):
if action_id == "*":
action = cp.listActions()[-1]
action_id = action.getId()
for n, action in enumerate(cp.listActions()):
if action.getId() == action_id:
return n
return -1
for item in CONTROL_PANELS:
id = item.get("id")
type = item.get("type")
title = item.get("title")
description = item.get("description")
panel = bika_setup.get(id, None)
if panel is None:
logger.info("Creating Setup Folder '{}' in Setup.".format(id))
# allow content creation in setup temporary
portal_types = api.get_tool("portal_types")
fti = portal_types.getTypeInfo(bika_setup)
fti.filter_content_types = False
myfti = portal_types.getTypeInfo(type)
global_allow = myfti.global_allow
myfti.global_allow = True
folder_id = bika_setup.invokeFactory(type, id, title=title)
panel = bika_setup[folder_id]
myfti.global_allow = global_allow
fti.filter_content_types = True
else:
# set some meta data
panel.setTitle(title)
panel.setDescription(description)
# Move configlet action to the right index
action_index = get_action_index(id)
ref_index = get_action_index(item["insert-after"])
if (action_index != -1) and (ref_index != -1):
actions = cp._cloneActions()
action = actions.pop(action_index)
actions.insert(ref_index + 1, action)
cp._actions = tuple(actions)
cp._p_changed = 1
# reindex the object to render it properly in the navigation portlet
panel.reindexObject()
def get_email_body(self, sample):
"""Returns the email body text
"""
retest = sample.getRetest()
lab_address = api.get_bika_setup().laboratory.getPrintAddress()
setup = api.get_setup()
body = Template(setup.getEmailBodySampleInvalidation())\
.safe_substitute(
dict(sample_link=self.get_html_link(sample),
retest_link=self.get_html_link(retest),
sample_id=api.get_id(sample),
retest_id=api.get_id(retest),
lab_address="<br/>".join(lab_address)))
return body
def setUp(self):
super(test_FormattedResult, self).setUp()
portal = get_portal()
bika_setup = get_bika_setup()
login(self.portal, TEST_USER_NAME)
self.client = self.addthing(
portal.clients, 'Client', title='Happy Hills', ClientID='HH')
self.contact = self.addthing(
self.client, 'Contact', Firstname='Rita', Lastname='Mohale')
self.sampletype = self.addthing(
bika_setup.bika_sampletypes, 'SampleType', Prefix='H2O')
self.service = self.addthing(
bika_setup.bika_analysisservices, 'AnalysisService',
title='Calcium', Keyword='Ca')
transaction.commit()
def purge_review_states(self):
"""Purges unnecessary review statuses
"""
remove_filters = []
setup = api.get_bika_setup()
if not setup.getSamplingWorkflowEnabled():
remove_filters.append("to_be_sampled")
if not setup.getScheduleSamplingEnabled():
remove_filters.append("scheduled_sampling")
if not setup.getSamplePreservationEnabled():
remove_filters.append("to_be_preserved")
if not setup.getRejectionReasons():
remove_filters.append("rejected")
self.review_states = filter(lambda r: r.get("id") not in remove_filters,
self.review_states)
def __call__(self, value, *args, **kwargs):
# avoid the catalog query if the option is not selected
if not api.get_bika_setup().ClientPatientIDUnique:
return True
query = dict(getClientPatientID=value)
patients = api.search(query, CATALOG_PATIENTS)
instance = kwargs.get('instance')
# If there are no patients with this Client Patient ID
# then it is valid
if not patients:
return True
# If there is only one patient with this Client Patient ID
# and it is the patient being edited then it also valid
if len(patients) == 1 and api.get_uid(
patients[0]) == api.get_uid(instance):
return True
trans = getToolByName(instance, 'translation_service').translate
msg = _("Validation failed: '${value}' is not unique",
mapping={'value': safe_unicode(value)})
return to_utf8(trans(msg))
def get_config(context, **kw):
"""Fetch the config dict from the Bika Setup for the given portal_type
"""
# get the ID formatting config
config_map = api.get_bika_setup().getIDFormatting()
# allow portal_type override
portal_type = get_type_id(context, **kw)
# check if we have a config for the given portal_type
for config in config_map:
if config['portal_type'].lower() == portal_type.lower():
return config
# return a default config
default_config = {
'form': '%s-{seq}' % portal_type.lower(),
'sequence_type': 'generated',
'prefix': '%s' % portal_type.lower(),
}
return default_config
def get_config(context, **kw):
"""Fetch the config dict from the Bika Setup for the given portal_type
"""
# get the ID formatting config
config_map = api.get_bika_setup().getIDFormatting()
# allow portal_type override
portal_type = kw.get("portal_type") or api.get_portal_type(context)
# check if we have a config for the given portal_type
for config in config_map:
if config['portal_type'].lower() == portal_type.lower():
return config
# return a default config
default_config = {
'form': '%s-{seq}' % portal_type.lower(),
'sequence_type': 'generated',
'prefix': '%s' % portal_type.lower(),
}
return default_config
def __call__(self, value, *args, **kwargs):
# avoid the catalog query if the option is not selected
if not api.get_bika_setup().ClientPatientIDUnique:
return True
query = dict(getClientPatientID=value)
patients = api.search(query, CATALOG_PATIENTS)
instance = kwargs.get('instance')
# If there are no patients with this Client Patient ID
# then it is valid
if not patients:
return True
# If there is only one patient with this Client Patient ID
# and it is the patient being edited then it also valid
if len(patients) == 1 and api.get_uid(patients[0]) == api.get_uid(instance):
return True
trans = getToolByName(instance, 'translation_service').translate
msg = _(
"Validation failed: '${value}' is not unique",
mapping={
'value': safe_unicode(value)
})
return to_utf8(trans(msg))
def rename_bika_setup():
logger.info("Renaming Bika Setup...")
bika_setup = api.get_bika_setup()
bika_setup.setTitle("Setup")
bika_setup.reindexObject()
def generateUniqueId(context, parent=False):
""" Generate pretty content IDs.
"""
def getLastCounter(context, config):
if config.get('counter_type', '') == 'backreference':
return len(context.getBackReferences(
config['counter_reference'])) - 1
elif config.get('counter_type', '') == 'contained':
return len(context.objectItems(config['counter_reference'])) - 1
else:
raise RuntimeError('ID Server: missing values in configuration')
number_generator = getUtility(INumberGenerator)
# keys = number_generator.keys()
# values = number_generator.values()
# for i in range(len(keys)):
# print '%s : %s' % (keys[i], values[i])
def getConfigByPortalType(config_map, portal_type):
config = {}
for c in config_map:
if c['portal_type'] == portal_type:
config = c
break
return config
config_map = api.get_bika_setup().getIDFormatting()
config = getConfigByPortalType(config_map=config_map,
portal_type=context.portal_type)
if context.portal_type == "AnalysisRequest":
variables_map = {
'sampleId': context.getSample().getId(),
'sample': context.getSample(),
}
elif context.portal_type == "SamplePartition":
variables_map = {
'sampleId': context.aq_parent.getId(),
'sample': context.aq_parent,
}
elif context.portal_type == "Sample" and parent:
config = getConfigByPortalType(
config_map=config_map, portal_type='SamplePartition') # Override
variables_map = {
'sampleId': context.getId(),
'sample': context,
}
elif context.portal_type == "Sample":
sampleDate = None
if context.getSamplingDate():
sampleDate = DT2dt(context.getSamplingDate())
variables_map = {
'clientId': context.aq_parent.getClientID(),
'sampleDate': sampleDate,
'sampleType': context.getSampleType().getPrefix(),
'year': DateTime().strftime("%Y")[2:],
}
else:
if not config:
# Provide default if no format specified on bika_setup
config = {
'form': '%s-{seq}' % context.portal_type.lower(),
'sequence_type': 'generated',
'prefix': '%s' % context.portal_type.lower(),
}
variables_map = {}
# Actual id construction starts here
form = config['form']
if config['sequence_type'] == 'counter':
new_seq = getLastCounter(context=variables_map[config['context']],
config=config)
elif config['sequence_type'] == 'generated':
if config.get('split_length', None) == 0:
prefix_config = '-'.join(form.split('-')[:-1])
prefix = prefix_config.format(**variables_map)
elif config.get('split_length', None) > 0:
prefix_config = '-'.join(form.split('-')[:config['split_length']])
prefix = prefix_config.format(**variables_map)
else:
prefix = config['prefix']
new_seq = number_generator(key=prefix)
variables_map['seq'] = new_seq + 1
result = form.format(**variables_map)
return result
def rename_bika_setup():
logger.info("Renaming Bika Setup...")
bika_setup = api.get_bika_setup()
bika_setup.setTitle("Setup")
bika_setup.reindexObject()
def generateUniqueId(context, parent=False):
""" Generate pretty content IDs.
"""
def getLastCounter(context, config):
if config.get('counter_type', '') == 'backreference':
return len(context.getBackReferences(config['counter_reference'])) - 1
elif config.get('counter_type', '') == 'contained':
return len(context.objectItems(config['counter_reference'])) - 1
else:
raise RuntimeError('ID Server: missing values in configuration')
number_generator = getUtility(INumberGenerator)
# keys = number_generator.keys()
# values = number_generator.values()
# for i in range(len(keys)):
# print '%s : %s' % (keys[i], values[i])
def getConfigByPortalType(config_map, portal_type):
config = {}
for c in config_map:
if c['portal_type'] == portal_type:
config = c
break
return config
config_map = api.get_bika_setup().getIDFormatting()
config = getConfigByPortalType(
config_map=config_map,
portal_type=context.portal_type)
if context.portal_type == "AnalysisRequest":
variables_map = {
'sampleId': context.getSample().getId(),
'sample': context.getSample(),
}
elif context.portal_type == "SamplePartition":
variables_map = {
'sampleId': context.aq_parent.getId(),
'sample': context.aq_parent,
}
elif context.portal_type == "Sample" and parent:
config = getConfigByPortalType(
config_map=config_map,
portal_type='SamplePartition') # Override
variables_map = {
'sampleId': context.getId(),
'sample': context,
}
elif context.portal_type == "Sample":
sampleDate = None
if context.getSamplingDate():
sampleDate = DT2dt(context.getSamplingDate())
variables_map = {
'clientId': context.aq_parent.getClientID(),
'sampleDate': sampleDate,
'sampleType': context.getSampleType().getPrefix(),
'year': DateTime().strftime("%Y")[2:],
}
else:
if not config:
# Provide default if no format specified on bika_setup
config = {
'form': '%s-{seq}' % context.portal_type.lower(),
'sequence_type': 'generated',
'prefix': '%s' % context.portal_type.lower(),
}
variables_map = {}
# Actual id construction starts here
form = config['form']
if config['sequence_type'] == 'counter':
new_seq = getLastCounter(
context=variables_map[config['context']],
config=config)
elif config['sequence_type'] == 'generated':
if config.get('split_length', None) == 0:
prefix_config = '-'.join(form.split('-')[:-1])
prefix = prefix_config.format(**variables_map)
elif config.get('split_length', None) > 0:
prefix_config = '-'.join(form.split('-')[:config['split_length']])
prefix = prefix_config.format(**variables_map)
else:
prefix = config['prefix']
new_seq = number_generator(key=prefix)
variables_map['seq'] = new_seq + 1
result = form.format(**variables_map)
return result
def get_laboratory_formatted_email(self):
"""Returns the laboratory email formatted
"""
lab = api.get_bika_setup().laboratory
return self.get_formatted_email((lab.getName(), lab.getEmailAddress()))
def global_ar_attachments_allowed(self):
"""Checks Bika Setup if AR Attachments are allowed
"""
bika_setup = api.get_bika_setup()
return bika_setup.getARAttachmentsPermitted()
def getSignificantFigures(self):
sfigs = self.getField('SignificantFigures').get(self)
if not sfigs:
bika_setup = get_bika_setup()
return bika_setup.getField('SignificantFigures').get(bika_setup)
def get_sigfig_precision(analysis):
sig_figures = analysis.getService().getSignificantFigures()
if sig_figures == 0: # indicates to use bika setup default:
sig_figures = get_bika_setup().getSignificantFigures()
return sig_figures
def __init__(self, context, request):
super(AnalysesView, self).__init__(context, request)
self.context = context
self.request = request
self.analyst = None
self.instrument = None
self.contentFilter = {
"getWorksheetUID": api.get_uid(context),
"sort_on": "sortable_title",
}
self.icon = "{}/{}".format(
self.portal_url, "++resource++bika.lims.images/worksheet_big.png")
self.allow_edit = True
self.show_categories = False
self.expand_all_categories = False
self.show_search = False
self.bika_setup = api.get_bika_setup()
self.uids_strpositions = self.get_uids_strpositions()
self.items_rowspans = dict()
self.columns = collections.OrderedDict((
("Pos", {
"sortable": False,
"title": _("Position")
}),
("Service", {
"sortable": False,
"title": _("Analysis")
}),
("Method", {
"sortable": False,
"ajax": True,
"title": _("Method")
}),
("Instrument", {
"sortable": False,
"ajax": True,
"title": _("Instrument")
}),
("DetectionLimitOperand", {
"title": _("DL"),
"sortable": False,
"ajax": True,
"autosave": True,
"toggle": False
}),
("Result", {
"title": _("Result"),
"ajax": True,
"sortable": False
}),
("retested", {
"title": get_image("retested.png", title=t(_("Retested"))),
"toggle": False,
"type": "boolean"
}),
("Specification", {
"title": _("Specification"),
"sortable": False
}),
("Uncertainty", {
"sortable": False,
"title": _("+-")
}),
("DueDate", {
"sortable": False,
"title": _("Due Date")
}),
("state_title", {
"sortable": False,
"title": _("State")
}),
("Attachments", {
"sortable": False,
"title": _("Attachments")
}),
))
# Inject Remarks column for listing
if self.is_analysis_remarks_enabled():
self.columns["Remarks"] = {
"title": "Remarks",
"ajax": True,
"toggle": False,
"sortable": False,
"type": "remarks"
}
self.review_states = [
{
"id": "default",
"title": _("All"),
"contentFilter": {},
"columns": self.columns.keys(),
},
]
def global_analysis_attachments_allowed(self):
"""Checks Bika Setup if Attachments for Analyses are allowed
"""
bika_setup = api.get_bika_setup()
return bika_setup.getAnalysisAttachmentsPermitted()
def update(self):
"""Called before the listing renders
"""
super(AnalysisRequestsView, self).update()
self.workflow = api.get_tool("portal_workflow")
self.member = self.mtool.getAuthenticatedMember()
self.roles = self.member.getRoles()
setup = api.get_bika_setup()
# remove `to_be_sampled` filter
if not setup.getSamplingWorkflowEnabled():
self.review_states = filter(
lambda x: x.get("id") != "to_be_sampled", self.review_states)
# remove `scheduled_sampling` filter
if not setup.getScheduleSamplingEnabled():
self.review_states = filter(
lambda x: x.get("id") != "scheduled_sampling",
self.review_states)
# remove `to_be_preserved` filter
if not setup.getSamplePreservationEnabled():
self.review_states = filter(
lambda x: x.get("id") != "to_be_preserved", self.review_states)
# remove `rejected` filter
if not setup.getRejectionReasons():
self.review_states = filter(lambda x: x.get("id") != "rejected",
self.review_states)
self.hideclientlink = "RegulatoryInspector" in self.roles \
and "Manager" not in self.roles \
and "LabManager" not in self.roles \
and "LabClerk" not in self.roles
if self.context.portal_type == "AnalysisRequestsFolder" and \
(self.mtool.checkPermission(AddAnalysisRequest, self.context)):
self.context_actions[_("Add")] = \
{"url": "ar_add?ar_count=1",
'permission': 'Add portal content',
"icon": "++resource++bika.lims.images/add.png"}
self.editresults = -1
self.clients = {}
# self.user_is_preserver = "Preserver" in self.roles
# Printing workflow enabled?
# If not, remove the Column
self.printwfenabled = \
self.context.bika_setup.getPrintingWorkflowEnabled()
printed_colname = "Printed"
if not self.printwfenabled and printed_colname in self.columns:
# Remove "Printed" columns
del self.columns[printed_colname]
tmprvs = []
for rs in self.review_states:
tmprs = rs
tmprs["columns"] = [
c for c in rs.get("columns", []) if c != printed_colname
]
tmprvs.append(tmprs)
self.review_states = tmprvs
elif self.printwfenabled:
# Print button to choose multiple ARs and print them.
review_states = []
for review_state in self.review_states:
review_state.get("custom_transitions", []).extend([
{
"id": "print_sample",
"title": _("Print"),
"url": "workflow_action?action=print_sample"
},
])
review_states.append(review_state)
self.review_states = review_states
# Only "senaite.core: ManageAnalysisRequests" may see the copy to new button.
# elsewhere it is hacked in where required.
if self.copy_to_new_allowed:
review_states = []
for review_state in self.review_states:
review_state.get("custom_transitions", []).extend([
{
"id": "copy_to_new",
"title": _("Copy to new"),
"url": "workflow_action?action=copy_to_new"
},
])
review_states.append(review_state)
self.review_states = review_states
def test_LIMS_2221_DecimalMarkWithSciNotation(self):
# Notations
# '1' => aE+b / aE-b
# '2' => ax10^b / ax10^-b
# '3' => ax10^b / ax10^-b (with superscript)
# '4' => a·10^b / a·10^-b
# '5' => a·10^b / a·10^-b (with superscript)
matrix = [
# as_prec as_exp not mark result formatted result
# ------- ------ --- ---- ------ ----------------
[0, 0, 1, ',', '0', '0'],
[0, 0, 2, ',', '0', '0'],
[0, 0, 3, ',', '0', '0'],
[0, 0, 4, ',', '0', '0'],
[0, 0, 5, ',', '0', '0'],
[2, 5, 1, ',', '0.01', '0,01'],
[2, 5, 2, ',', '0.01', '0,01'],
[2, 5, 3, ',', '0.01', '0,01'],
[2, 5, 4, ',', '0.01', '0,01'],
[2, 5, 5, ',', '0.01', '0,01'],
[2, 1, 1, ',', '0.123', '1,2e-01'],
[2, 1, 2, ',', '0.123', '1,2x10^-1'],
[2, 1, 3, ',', '0.123', '1,2x10<sup>-1</sup>'],
[2, 1, 4, ',', '0.123', '1,2·10^-1'],
[2, 1, 5, ',', '0.123', '1,2·10<sup>-1</sup>'],
[2, 1, 1, ',', '1.234', '1,23'],
[2, 1, 2, ',', '1.234', '1,23'],
[2, 1, 3, ',', '1.234', '1,23'],
[2, 1, 4, ',', '1.234', '1,23'],
[2, 1, 5, ',', '1.234', '1,23'],
[2, 1, 1, ',', '12.345', '1,235e01'],
[2, 1, 2, ',', '12.345', '1,235x10^1'],
[2, 1, 3, ',', '12.345', '1,235x10<sup>1</sup>'],
[2, 1, 4, ',', '12.345', '1,235·10^1'],
[2, 1, 5, ',', '12.345', '1,235·10<sup>1</sup>'],
[4, 3, 1, ',', '-123.45678', '-123,4568'],
[4, 3, 2, ',', '-123.45678', '-123,4568'],
[4, 3, 3, ',', '-123.45678', '-123,4568'],
[4, 3, 4, ',', '-123.45678', '-123,4568'],
[4, 3, 5, ',', '-123.45678', '-123,4568'],
[4, 3, 1, ',', '-1234.5678', '-1,2345678e03'],
[4, 3, 2, ',', '-1234.5678', '-1,2345678x10^3'],
[4, 3, 3, ',', '-1234.5678', '-1,2345678x10<sup>3</sup>'],
[4, 3, 4, ',', '-1234.5678', '-1,2345678·10^3'],
[4, 3, 5, ',', '-1234.5678', '-1,2345678·10<sup>3</sup>'],
]
serv = self.service
serv.setLowerDetectionLimit('-99999') # test results below 0 too
prevm = []
an = None
bs = get_bika_setup()
for m in matrix:
as_prec = m[0]
as_exp = m[1]
notation = m[2]
_dm = m[3]
_result = m[4]
_expected = m[5]
bs.setResultsDecimalMark(_dm)
# Create the AR and set the values to the AS, but only if necessary
if not an or prevm[0] != as_prec or prevm[1] != as_exp:
serv.setPrecision(as_prec)
serv.setExponentialFormatPrecision(as_exp)
self.assertEqual(serv.getPrecision(), as_prec)
self.assertEqual(
serv.Schema().getField('Precision').get(serv), as_prec)
self.assertEqual(serv.getExponentialFormatPrecision(), as_exp)
self.assertEqual(
serv.Schema().getField(
'ExponentialFormatPrecision').get(serv), as_exp)
values = {'Client': self.client.UID(),
'Contact': self.client.getContacts()[0].UID(),
'SamplingDate': '2015-01-01',
'SampleType': self.sampletype.UID()}
ar = create_analysisrequest(self.client, {}, values,
[serv.UID()])
do_transition_for(ar, 'receive')
an = ar.getAnalyses()[0].getObject()
prevm = m
an.setResult(_result)
self.assertEqual(an.getResult(), _result)
self.assertEqual(an.Schema().getField('Result').get(an), _result)
decimalmark = bs.getResultsDecimalMark()
fr = an.getFormattedResult(sciformat=notation,
decimalmark=decimalmark)
self.assertEqual(fr, _expected)
def notify_ar_retract(self, ar, newar):
bika_setup = api.get_bika_setup()
laboratory = bika_setup.laboratory
lab_address = "<br/>".join(laboratory.getPrintAddress())
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = t(_("Erroneus result publication from ${request_id}",
mapping={"request_id": ar.getRequestID()}))
mime_msg['From'] = formataddr(
(encode_header(laboratory.getName()),
laboratory.getEmailAddress()))
to = []
contact = ar.getContact()
if contact:
to.append(formataddr((encode_header(contact.Title()),
contact.getEmailAddress())))
for cc in ar.getCCContact():
formatted = formataddr((encode_header(cc.Title()),
cc.getEmailAddress()))
if formatted not in to:
to.append(formatted)
managers = self.context.portal_groups.getGroupMembers('LabManagers')
for bcc in managers:
user = self.portal.acl_users.getUser(bcc)
if user:
uemail = user.getProperty('email')
ufull = user.getProperty('fullname')
formatted = formataddr((encode_header(ufull), uemail))
if formatted not in to:
to.append(formatted)
mime_msg['To'] = ','.join(to)
aranchor = "<a href='%s'>%s</a>" % (ar.absolute_url(),
ar.getRequestID())
naranchor = "<a href='%s'>%s</a>" % (newar.absolute_url(),
newar.getRequestID())
addremarks = ('addremarks' in self.request and ar.getRemarks()) and ("<br/><br/>" + _("Additional remarks:") +
"<br/>" + ar.getRemarks().split("===")[1].strip() +
"<br/><br/>") or ''
sub_d = dict(request_link=aranchor,
new_request_link=naranchor,
remarks=addremarks,
lab_address=lab_address)
body = Template("Some errors have been detected in the results report "
"published from the Analysis Request $request_link. The Analysis "
"Request $new_request_link has been created automatically and the "
"previous has been invalidated.<br/>The possible mistake "
"has been picked up and is under investigation.<br/><br/>"
"$remarks $lab_address").safe_substitute(sub_d)
msg_txt = MIMEText(safe_unicode(body).encode('utf-8'),
_subtype='html')
mime_msg.preamble = 'This is a multi-part MIME message.'
mime_msg.attach(msg_txt)
try:
host = getToolByName(self.context, 'MailHost')
host.send(mime_msg.as_string(), immediate=True)
except Exception as msg:
message = _('Unable to send an email to alert lab '
'client contacts that the Analysis Request has been '
'retracted: ${error}',
mapping={'error': safe_unicode(msg)})
self.context.plone_utils.addPortalMessage(message, 'warning')
def notify_ar_retract(self, ar, newar):
bika_setup = api.get_bika_setup()
laboratory = bika_setup.laboratory
lab_address = "<br/>".join(laboratory.getPrintAddress())
mime_msg = MIMEMultipart('related')
mime_msg['Subject'] = t(
_("Erroneus result publication from ${request_id}",
mapping={"request_id": ar.getId()}))
mime_msg['From'] = formataddr((encode_header(laboratory.getName()),
laboratory.getEmailAddress()))
to = []
contact = ar.getContact()
if contact:
to.append(
formataddr((encode_header(contact.Title()),
contact.getEmailAddress())))
for cc in ar.getCCContact():
formatted = formataddr(
(encode_header(cc.Title()), cc.getEmailAddress()))
if formatted not in to:
to.append(formatted)
managers = self.context.portal_groups.getGroupMembers('LabManagers')
for bcc in managers:
user = self.portal.acl_users.getUser(bcc)
if user:
uemail = user.getProperty('email')
ufull = user.getProperty('fullname')
formatted = formataddr((encode_header(ufull), uemail))
if formatted not in to:
to.append(formatted)
mime_msg['To'] = ','.join(to)
aranchor = "<a href='%s'>%s</a>" % (ar.absolute_url(), ar.getId())
naranchor = "<a href='%s'>%s</a>" % (newar.absolute_url(),
newar.getId())
addremarks = ('addremarks' in self.request and ar.getRemarks()) and (
"<br/><br/>" + _("Additional remarks:") + "<br/>" +
ar.getRemarks().split("===")[1].strip() + "<br/><br/>") or ''
sub_d = dict(request_link=aranchor,
new_request_link=naranchor,
remarks=addremarks,
lab_address=lab_address)
body = Template(
"Some errors have been detected in the results report "
"published from the Analysis Request $request_link. The Analysis "
"Request $new_request_link has been created automatically and the "
"previous has been invalidated.<br/>The possible mistake "
"has been picked up and is under investigation.<br/><br/>"
"$remarks $lab_address").safe_substitute(sub_d)
msg_txt = MIMEText(safe_unicode(body).encode('utf-8'), _subtype='html')
mime_msg.preamble = 'This is a multi-part MIME message.'
mime_msg.attach(msg_txt)
try:
host = getToolByName(self.context, 'MailHost')
host.send(mime_msg.as_string(), immediate=True)
except Exception as msg:
message = _(
'Unable to send an email to alert lab '
'client contacts that the Analysis Request has been '
'retracted: ${error}',
mapping={'error': safe_unicode(msg)})
self.context.plone_utils.addPortalMessage(message, 'warning')
def get_display_rounding_type(analysis):
service = analysis.getService()
rounding_type = service.getDisplayRounding()
if not rounding_type or rounding_type == 'DEFAULT':
rounding_type = get_bika_setup().getDisplayRounding()
return rounding_type
