def __init__(self, context, request, **kwargs):
AnalysesView.__init__(self, context, request, **kwargs)
self.form_id = "{}_qcanalyses".format(api.get_uid(context))
self.allow_edit = False
self.show_select_column = False
self.show_search = False
self.omit_form = True
self.catalog = CATALOG_ANALYSIS_LISTING
self.contentFilter = {
"portal_type": "ReferenceAnalysis",
"getInstrumentUID": api.get_uid(self.context),
"sort_on": "getResultCaptureDate",
"sort_order": "reverse"
}
self.columns["getReferenceAnalysesGroupID"] = {
"title": _("QC Sample ID"),
"sortable": False
}
self.columns["Partition"] = {
"title": _("Reference Sample"),
"sortable": False
}
self.columns["Retractions"] = {"title": "", "sortable": False}
self.review_states[0]["columns"] = [
"Service", "getReferenceAnalysesGroupID", "Partition", "Result",
"Uncertainty", "CaptureDate", "Retractions"
]
self.review_states[0]["transitions"] = [{}]
self.chart = EvolutionChart()
def __init__(self, context, request):
AnalysesView.__init__(self, context, request)
self.contentFilter = {
'portal_type': 'ReferenceAnalysis',
'path': {'query': "/".join(self.context.getPhysicalPath()),
'level': 0}}
self.columns = {
'id': {'title': _('ID'), 'toggle': False},
'getReferenceAnalysesGroupID': {
'title': _('QC Sample ID'), 'toggle': True},
'Category': {'title': _('Category'), 'toggle': True},
'Service': {'title': _('Service'), 'toggle': True},
'Worksheet': {'title': _('Worksheet'), 'toggle': True},
'Method': {
'title': _('Method'),
'sortable': False,
'toggle': True},
'Instrument': {
'title': _('Instrument'),
'sortable': False,
'toggle': True},
'Result': {'title': _('Result'), 'toggle': True},
'CaptureDate': {
'title': _('Captured'),
'index': 'getResultCaptureDate',
'toggle': True},
'Uncertainty': {'title': _('+-'), 'toggle': True},
'DueDate': {'title': _('Due Date'),
'index': 'getDueDate',
'toggle': True},
'retested': {'title': _('Retested'),
'type': 'boolean', 'toggle': True},
'state_title': {'title': _('State'), 'toggle': True},
}
self.review_states = [
{'id': 'default',
'title': _('All'),
'contentFilter': {},
'transitions': [],
'columns':['id',
'getReferenceAnalysesGroupID',
'Category',
'Service',
'Worksheet',
'Method',
'Instrument',
'Result',
'CaptureDate',
'Uncertainty',
'DueDate',
'state_title'],
},
]
self.chart = EvolutionChart()
def __init__(self, context, request, **kwargs):
AnalysesView.__init__(self, context, request, **kwargs)
self.catalog = CATALOG_ANALYSIS_LISTING
self.contentFilter = {
"portal_type": "ReferenceAnalysis",
"getInstrumentUID": api.get_uid(self.context),
"sort_on": "getResultCaptureDate",
"sort_order": "reverse"
}
self.columns['getReferenceAnalysesGroupID'] = {
'title': _('QC Sample ID'),
'sortable': False
}
self.columns['Partition'] = {
'title': _('Reference Sample'),
'sortable': False
}
self.columns['Retractions'] = {'title': '', 'sortable': False}
self.review_states[0]['columns'] = [
'Service', 'getReferenceAnalysesGroupID', 'Partition', 'Result',
'Uncertainty', 'CaptureDate', 'Retractions'
]
self.chart = EvolutionChart()
class InstrumentReferenceAnalysesView(AnalysesView):
"""View for the table of Reference Analyses linked to the Instrument.
Only shows the Reference Analyses (Control and Blanks), the rest of regular
and duplicate analyses linked to this instrument are not displayed.
"""
def __init__(self, context, request, **kwargs):
AnalysesView.__init__(self, context, request, **kwargs)
self.form_id = "{}_qcanalyses".format(api.get_uid(context))
self.allow_edit = False
self.show_select_column = False
self.show_search = False
self.omit_form = True
self.catalog = CATALOG_ANALYSIS_LISTING
self.contentFilter = {
"portal_type": "ReferenceAnalysis",
"getInstrumentUID": api.get_uid(self.context),
"sort_on": "getResultCaptureDate",
"sort_order": "reverse"
}
self.columns["getReferenceAnalysesGroupID"] = {
"title": _("QC Sample ID"),
"sortable": False
}
self.columns["Partition"] = {
"title": _("Reference Sample"),
"sortable": False
}
self.columns["Retractions"] = {"title": "", "sortable": False}
self.review_states[0]["columns"] = [
"Service", "getReferenceAnalysesGroupID", "Partition", "Result",
"Uncertainty", "CaptureDate", "Retractions"
]
self.review_states[0]["transitions"] = [{}]
self.chart = EvolutionChart()
def isItemAllowed(self, obj):
allowed = super(InstrumentReferenceAnalysesView,
self).isItemAllowed(obj)
return allowed or obj.getResult != ""
def folderitem(self, obj, item, index):
item = super(InstrumentReferenceAnalysesView,
self).folderitem(obj, item, index)
analysis = api.get_object(obj)
# Partition is used to group/toggle QC Analyses
sample = analysis.getSample()
item["replace"]["Partition"] = get_link(api.get_url(sample),
api.get_id(sample))
# Get retractions field
item["Retractions"] = ""
report = analysis.getRetractedAnalysesPdfReport()
if report:
url = api.get_url(analysis)
href = "{}/at_download/RetractedAnalysesPdfReport".format(url)
attrs = {"class": "pdf", "target": "_blank"}
title = _("Retractions")
link = get_link(href, title, **attrs)
item["Retractions"] = title
item["replace"]["Retractions"] = link
# Add the analysis to the QC Chart
self.chart.add_analysis(analysis)
return item
def __init__(self, context, request):
super(ReferenceAnalysesView, self).__init__(context, request)
self.form_id = "{}_qcanalyses".format(api.get_uid(context))
self.allow_edit = False
self.show_select_column = False
self.show_search = False
self.omit_form = True
self.show_search = False
self.contentFilter = {
"portal_type": "ReferenceAnalysis",
"path": {
"query": "/".join(self.context.getPhysicalPath()),
"level": 0}
}
self.columns = collections.OrderedDict((
("id", {
"title": _("ID"),
"sortable": False,
"toggle": False}),
("getReferenceAnalysesGroupID", {
"title": _("QC Sample ID"),
"sortable": False,
"toggle": True}),
("Category", {
"title": _("Category"),
"sortable": False,
"toggle": True}),
("Service", {
"title": _("Service"),
"sortable": False,
"toggle": True}),
("Worksheet", {
"title": _("Worksheet"),
"sortable": False,
"toggle": True}),
("Method", {
"title": _("Method"),
"sortable": False,
"toggle": True}),
("Instrument", {
"title": _("Instrument"),
"sortable": False,
"toggle": True}),
("Result", {
"title": _("Result"),
"sortable": False,
"toggle": True}),
("CaptureDate", {
"title": _("Captured"),
"sortable": False,
"toggle": True}),
("Uncertainty", {
"title": _("+-"),
"sortable": False,
"toggle": True}),
("DueDate", {
"title": _("Due Date"),
"sortable": False,
"toggle": True}),
("retested", {
"title": _("Retested"),
"sortable": False,
"type": "boolean",
"toggle": True}),
("state_title", {
"title": _("State"),
"sortable": False,
"toggle": True}),
))
self.review_states = [
{
"id": "default",
"title": _("All"),
"contentFilter": {},
"transitions": [],
"columns": self.columns.keys()
},
]
self.chart = EvolutionChart()
class ReferenceAnalysesView(AnalysesView):
"""Reference Analyses on this sample
"""
def __init__(self, context, request):
super(ReferenceAnalysesView, self).__init__(context, request)
self.form_id = "{}_qcanalyses".format(api.get_uid(context))
self.allow_edit = False
self.show_select_column = False
self.show_search = False
self.omit_form = True
self.show_search = False
self.contentFilter = {
"portal_type": "ReferenceAnalysis",
"path": {
"query": "/".join(self.context.getPhysicalPath()),
"level": 0}
}
self.columns = collections.OrderedDict((
("id", {
"title": _("ID"),
"sortable": False,
"toggle": False}),
("getReferenceAnalysesGroupID", {
"title": _("QC Sample ID"),
"sortable": False,
"toggle": True}),
("Category", {
"title": _("Category"),
"sortable": False,
"toggle": True}),
("Service", {
"title": _("Service"),
"sortable": False,
"toggle": True}),
("Worksheet", {
"title": _("Worksheet"),
"sortable": False,
"toggle": True}),
("Method", {
"title": _("Method"),
"sortable": False,
"toggle": True}),
("Instrument", {
"title": _("Instrument"),
"sortable": False,
"toggle": True}),
("Result", {
"title": _("Result"),
"sortable": False,
"toggle": True}),
("CaptureDate", {
"title": _("Captured"),
"sortable": False,
"toggle": True}),
("Uncertainty", {
"title": _("+-"),
"sortable": False,
"toggle": True}),
("DueDate", {
"title": _("Due Date"),
"sortable": False,
"toggle": True}),
("retested", {
"title": _("Retested"),
"sortable": False,
"type": "boolean",
"toggle": True}),
("state_title", {
"title": _("State"),
"sortable": False,
"toggle": True}),
))
self.review_states = [
{
"id": "default",
"title": _("All"),
"contentFilter": {},
"transitions": [],
"columns": self.columns.keys()
},
]
self.chart = EvolutionChart()
def is_analysis_edition_allowed(self, analysis_brain):
"""see AnalysesView.is_analysis_edition_allowed
"""
return False
def folderitem(self, obj, item, index):
"""Service triggered each time an item is iterated in folderitems.
The use of this service prevents the extra-loops in child objects.
:obj: the instance of the class to be foldered
:item: dict containing the properties of the object to be used by
the template
:index: current index of the item
"""
item = super(ReferenceAnalysesView, self).folderitem(obj, item, index)
if not item:
return None
item["Category"] = obj.getCategoryTitle
ref_analysis = api.get_object(obj)
ws = ref_analysis.getWorksheet()
if not ws:
logger.warn(
"No Worksheet found for ReferenceAnalysis {}"
.format(obj.getId))
else:
item["Worksheet"] = ws.Title()
anchor = "<a href='%s'>%s</a>" % (ws.absolute_url(), ws.Title())
item["replace"]["Worksheet"] = anchor
# Add the analysis to the QC Chart
self.chart.add_analysis(obj)
return item
class ReferenceAnalysesView(AnalysesView):
""" Reference Analyses on this sample
"""
implements(IViewView)
def __init__(self, context, request):
AnalysesView.__init__(self, context, request)
self.contentFilter = {
'portal_type': 'ReferenceAnalysis',
'path': {'query': "/".join(self.context.getPhysicalPath()),
'level': 0}}
self.columns = {
'id': {'title': _('ID'), 'toggle': False},
'getReferenceAnalysesGroupID': {
'title': _('QC Sample ID'), 'toggle': True},
'Category': {'title': _('Category'), 'toggle': True},
'Service': {'title': _('Service'), 'toggle': True},
'Worksheet': {'title': _('Worksheet'), 'toggle': True},
'Method': {
'title': _('Method'),
'sortable': False,
'toggle': True},
'Instrument': {
'title': _('Instrument'),
'sortable': False,
'toggle': True},
'Result': {'title': _('Result'), 'toggle': True},
'CaptureDate': {
'title': _('Captured'),
'index': 'getResultCaptureDate',
'toggle': True},
'Uncertainty': {'title': _('+-'), 'toggle': True},
'DueDate': {'title': _('Due Date'),
'index': 'getDueDate',
'toggle': True},
'retested': {'title': _('Retested'),
'type': 'boolean', 'toggle': True},
'state_title': {'title': _('State'), 'toggle': True},
}
self.review_states = [
{'id': 'default',
'title': _('All'),
'contentFilter': {},
'transitions': [],
'columns':['id',
'getReferenceAnalysesGroupID',
'Category',
'Service',
'Worksheet',
'Method',
'Instrument',
'Result',
'CaptureDate',
'Uncertainty',
'DueDate',
'state_title'],
},
]
self.chart = EvolutionChart()
def isItemAllowed(self, obj):
"""
:obj: it is a brain
"""
allowed = super(ReferenceAnalysesView, self).isItemAllowed(obj)
return allowed if not allowed else obj.getResult != ''
def folderitem(self, obj, item, index):
"""
:obj: it is a brain
"""
item = super(ReferenceAnalysesView, self).folderitem(obj, item, index)
if not item:
return None
item['Category'] = obj.getCategoryTitle
wss = self.rc.getBackReferences(
obj.UID,
relationship="WorksheetAnalysis")
if not wss:
logger.warn(
'No Worksheet found for ReferenceAnalysis {}'
.format(obj.getId))
elif wss and len(wss) == 1:
# TODO-performance: We are getting the object here...
ws = wss[0].getSourceObject()
item['Worksheet'] = ws.Title()
anchor = '<a href="%s">%s</a>' % (ws.absolute_url(), ws.Title())
item['replace']['Worksheet'] = anchor
else:
logger.warn(
'More than one Worksheet found for ReferenceAnalysis {}'
.format(obj.getId))
# Add the analysis to the QC Chart
self.chart.add_analysis(obj)
return item
class InstrumentReferenceAnalysesView(AnalysesView):
""" View for the table of Reference Analyses linked to the Instrument.
Only shows the Reference Analyses (Control and Blanks), the rest
of regular and duplicate analyses linked to this instrument are
not displayed.
"""
def __init__(self, context, request, **kwargs):
AnalysesView.__init__(self, context, request, **kwargs)
self.catalog = CATALOG_ANALYSIS_LISTING
self.contentFilter = {
"portal_type": "ReferenceAnalysis",
"getInstrumentUID": api.get_uid(self.context),
"sort_on": "getResultCaptureDate",
"sort_order": "reverse"
}
self.columns['getReferenceAnalysesGroupID'] = {
'title': _('QC Sample ID'),
'sortable': False
}
self.columns['Partition'] = {
'title': _('Reference Sample'),
'sortable': False
}
self.columns['Retractions'] = {'title': '', 'sortable': False}
self.review_states[0]['columns'] = [
'Service', 'getReferenceAnalysesGroupID', 'Partition', 'Result',
'Uncertainty', 'CaptureDate', 'Retractions'
]
self.chart = EvolutionChart()
def isItemAllowed(self, obj):
"""
:obj: it is a brain
"""
allowed = super(InstrumentReferenceAnalysesView,
self).isItemAllowed(obj)
return allowed or obj.getResult != ''
def folderitem(self, obj, item, index):
item = super(InstrumentReferenceAnalysesView,
self).folderitem(obj, item, index)
analysis = api.get_object(obj)
# Partition is used to group/toggle QC Analyses
sample = analysis.getSample()
item['replace']['Partition'] = get_link(api.get_url(sample),
api.get_id(sample))
# Get retractions field
item['Retractions'] = ''
report = analysis.getRetractedAnalysesPdfReport()
if report:
url = api.get_url(analysis)
href = "{}/at_download/RetractedAnalysesPdfReport".format(url)
attrs = {"class": "pdf", "target": "_blank"}
title = _("Retractions")
link = get_link(href, title, **attrs)
item['Retractions'] = title
item['replace']['Retractions'] = link
# Add the analysis to the QC Chart
self.chart.add_analysis(analysis)
return item
