def setup_handler(context):
"""SENAITE setup handler
"""
if context.readDataFile("bika.lims_various.txt") is None:
return
logger.info("SENAITE setup handler [BEGIN]")
portal = context.getSite()
# Run Installers
remove_default_content(portal)
hide_navbar_items(portal)
reindex_content_structure(portal)
setup_groups(portal)
setup_catalog_mappings(portal)
setup_core_catalogs(portal)
# Setting up all LIMS catalogs defined in catalog folder
setup_catalogs(portal, getCatalogDefinitions())
# Run after all catalogs have been setup
setup_auditlog_catalog(portal)
logger.info("SENAITE setup handler [DONE]")
def setupCatalogs(self, portal):
# an item should belong to only one catalog.
# that way looking it up means first looking up *the* catalog
# in which it is indexed, as well as making it cheaper to index.
def addIndex(cat, *args):
# noinspection PyBroadException
try:
cat.addIndex(*args)
except:
pass
def addColumn(cat, col):
# noinspection PyBroadException
try:
cat.addColumn(col)
except:
pass
# create lexicon
wordSplitter = Empty()
wordSplitter.group = 'Word Splitter'
wordSplitter.name = 'Unicode Whitespace splitter'
caseNormalizer = Empty()
caseNormalizer.group = 'Case Normalizer'
caseNormalizer.name = 'Unicode Case Normalizer'
stopWords = Empty()
stopWords.group = 'Stop Words'
stopWords.name = 'Remove listed and single char words'
elem = [wordSplitter, caseNormalizer, stopWords]
zc_extras = Empty()
zc_extras.index_type = 'Okapi BM25 Rank'
zc_extras.lexicon_id = 'Lexicon'
# bika_catalog
bc = getToolByName(portal, 'bika_catalog', None)
if bc is None:
logger.warning('Could not find the bika_catalog tool.')
return
# noinspection PyBroadException
try:
bc.manage_addProduct['ZCTextIndex'].manage_addLexicon(
'Lexicon', 'Lexicon', elem)
except:
logger.warning('Could not add ZCTextIndex to bika_catalog')
pass
at = getToolByName(portal, 'archetype_tool')
at.setCatalogsByType('Batch', ['bika_catalog', 'portal_catalog'])
# TODO Remove in >v1.3.0
at.setCatalogsByType('Sample', ['bika_catalog', 'portal_catalog'])
# TODO Remove in >v1.3.0
at.setCatalogsByType('SamplePartition',
['bika_catalog', 'portal_catalog'])
at.setCatalogsByType('ReferenceSample',
['bika_catalog', 'portal_catalog'])
addIndex(bc, 'path', 'ExtendedPathIndex', 'getPhysicalPath')
addIndex(bc, 'allowedRolesAndUsers', 'KeywordIndex')
addIndex(bc, 'UID', 'FieldIndex')
addIndex(bc, 'SearchableText', 'ZCTextIndex', zc_extras)
addIndex(bc, 'Title', 'ZCTextIndex', zc_extras)
addIndex(bc, 'Description', 'ZCTextIndex', zc_extras)
addIndex(bc, 'id', 'FieldIndex')
addIndex(bc, 'getId', 'FieldIndex')
addIndex(bc, 'Type', 'FieldIndex')
addIndex(bc, 'portal_type', 'FieldIndex')
addIndex(bc, 'created', 'DateIndex')
addIndex(bc, 'Creator', 'FieldIndex')
addIndex(bc, 'getObjPositionInParent', 'GopipIndex')
addIndex(bc, 'title', 'FieldIndex', 'Title')
addIndex(bc, 'sortable_title', 'FieldIndex')
addIndex(bc, 'description', 'FieldIndex', 'Description')
addIndex(bc, 'review_state', 'FieldIndex')
addIndex(bc, 'Identifiers', 'KeywordIndex')
addIndex(bc, 'is_active', 'BooleanIndex')
addIndex(bc, 'BatchDate', 'DateIndex')
addIndex(bc, 'getClientTitle', 'FieldIndex')
addIndex(bc, 'getClientUID', 'FieldIndex')
addIndex(bc, 'getClientID', 'FieldIndex')
addIndex(bc, 'getClientBatchID', 'FieldIndex')
addIndex(bc, 'getDateReceived', 'DateIndex')
addIndex(bc, 'getDateSampled', 'DateIndex')
addIndex(bc, 'getDueDate', 'DateIndex')
addIndex(bc, 'getExpiryDate', 'DateIndex')
addIndex(bc, 'getReferenceDefinitionUID', 'FieldIndex')
addIndex(bc, 'getSampleTypeTitle', 'FieldIndex')
addIndex(bc, 'getSampleTypeUID', 'FieldIndex')
# https://github.com/senaite/senaite.core/pull/1091
addIndex(bc, 'getSupportedServices', 'KeywordIndex')
addIndex(bc, 'getBlank', 'BooleanIndex')
addIndex(bc, 'isValid', 'BooleanIndex')
addColumn(bc, 'path')
addColumn(bc, 'UID')
addColumn(bc, 'id')
addColumn(bc, 'getId')
addColumn(bc, 'Type')
addColumn(bc, 'portal_type')
addColumn(bc, 'creator')
addColumn(bc, 'Created')
addColumn(bc, 'Title')
addColumn(bc, 'Description')
addColumn(bc, 'sortable_title')
addColumn(bc, 'getClientTitle')
addColumn(bc, 'getClientID')
addColumn(bc, 'getClientBatchID')
addColumn(bc, 'getSampleTypeTitle')
addColumn(bc, 'getDateReceived')
addColumn(bc, 'getDateSampled')
addColumn(bc, 'review_state')
# bika_setup_catalog
bsc = getToolByName(portal, 'bika_setup_catalog', None)
if bsc is None:
logger.warning('Could not find the setup catalog tool.')
return
# noinspection PyBroadException
try:
bsc.manage_addProduct['ZCTextIndex'].manage_addLexicon(
'Lexicon', 'Lexicon', elem)
except:
logger.warning('Could not add ZCTextIndex to bika_setup_catalog')
pass
at = getToolByName(portal, 'archetype_tool')
at.setCatalogsByType('Department',
['bika_setup_catalog', "portal_catalog", ])
at.setCatalogsByType('Container', ['bika_setup_catalog', ])
at.setCatalogsByType('ContainerType', ['bika_setup_catalog', ])
at.setCatalogsByType('AnalysisCategory', ['bika_setup_catalog', ])
at.setCatalogsByType('AnalysisService',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('AnalysisSpec', ['bika_setup_catalog', ])
at.setCatalogsByType('SampleCondition', ['bika_setup_catalog'])
at.setCatalogsByType('SampleMatrix', ['bika_setup_catalog', ])
at.setCatalogsByType('SampleType',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('SamplePoint',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('StorageLocation',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('SamplingDeviation', ['bika_setup_catalog', ])
at.setCatalogsByType('IdentifierType', ['bika_setup_catalog', ])
at.setCatalogsByType('Instrument',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('InstrumentType',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('InstrumentLocation',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('Method', ['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('Multifile', ['bika_setup_catalog'])
at.setCatalogsByType('AttachmentType', ['bika_setup_catalog', ])
at.setCatalogsByType('Attachment', ['portal_catalog'])
at.setCatalogsByType('Calculation',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('AnalysisProfile',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('ARTemplate',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('LabProduct',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('LabContact',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('Manufacturer',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('Preservation', ['bika_setup_catalog', ])
at.setCatalogsByType('ReferenceDefinition',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('SRTemplate',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('SubGroup', ['bika_setup_catalog', ])
at.setCatalogsByType('Supplier',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('Unit', ['bika_setup_catalog', ])
at.setCatalogsByType('WorksheetTemplate',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('BatchLabel', ['bika_setup_catalog', ])
addIndex(bsc, 'path', 'ExtendedPathIndex', 'getPhysicalPath')
addIndex(bsc, 'allowedRolesAndUsers', 'KeywordIndex')
addIndex(bsc, 'UID', 'FieldIndex')
addIndex(bsc, 'SearchableText', 'ZCTextIndex', zc_extras)
addIndex(bsc, 'Title', 'ZCTextIndex', zc_extras)
addIndex(bsc, 'Description', 'ZCTextIndex', zc_extras)
addIndex(bsc, 'id', 'FieldIndex')
addIndex(bsc, 'getId', 'FieldIndex')
addIndex(bsc, 'Type', 'FieldIndex')
addIndex(bsc, 'portal_type', 'FieldIndex')
addIndex(bsc, 'created', 'DateIndex')
addIndex(bsc, 'Creator', 'FieldIndex')
addIndex(bsc, 'getObjPositionInParent', 'GopipIndex')
addIndex(bc, 'Identifiers', 'KeywordIndex')
addIndex(bsc, 'title', 'FieldIndex', 'Title')
addIndex(bsc, 'sortable_title', 'FieldIndex')
addIndex(bsc, 'description', 'FieldIndex', 'Description')
addIndex(bsc, 'review_state', 'FieldIndex')
addIndex(bsc, 'getAccredited', 'FieldIndex')
addIndex(bsc, 'getAnalyst', 'FieldIndex')
addIndex(bsc, 'getBlank', 'FieldIndex')
addIndex(bsc, 'getCalculationTitle', 'FieldIndex')
addIndex(bsc, 'getCalculationUID', 'FieldIndex')
addIndex(bsc, 'getCalibrationExpiryDate', 'FieldIndex')
addIndex(bsc, 'getCategoryTitle', 'FieldIndex')
addIndex(bsc, 'getCategoryUID', 'FieldIndex')
addIndex(bsc, 'getClientUID', 'FieldIndex')
addIndex(bsc, 'getDepartmentTitle', 'FieldIndex')
addIndex(bsc, 'getDocumentID', 'FieldIndex')
addIndex(bsc, 'getDuplicateVariation', 'FieldIndex')
addIndex(bsc, 'getFormula', 'FieldIndex')
addIndex(bsc, 'getFullname', 'FieldIndex')
addIndex(bsc, 'getHazardous', 'FieldIndex')
addIndex(bsc, 'getInstrumentLocationName', 'FieldIndex')
addIndex(bsc, 'getInstrumentTitle', 'FieldIndex')
addIndex(bsc, 'getInstrumentType', 'FieldIndex')
addIndex(bsc, 'getInstrumentTypeName', 'FieldIndex')
addIndex(bsc, 'getKeyword', 'FieldIndex')
addIndex(bsc, 'getManagerEmail', 'FieldIndex')
addIndex(bsc, 'getManagerName', 'FieldIndex')
addIndex(bsc, 'getManagerPhone', 'FieldIndex')
addIndex(bsc, 'getMaxTimeAllowed', 'FieldIndex')
addIndex(bsc, 'getMethodID', 'FieldIndex')
addIndex(bsc, 'getAvailableMethodUIDs', 'KeywordIndex')
addIndex(bsc, 'getModel', 'FieldIndex')
addIndex(bsc, 'getName', 'FieldIndex')
addIndex(bsc, 'getPointOfCapture', 'FieldIndex')
addIndex(bsc, 'getPrice', 'FieldIndex')
addIndex(bsc, 'getSamplePointTitle', 'KeywordIndex')
addIndex(bsc, 'getSamplePointUID', 'FieldIndex')
addIndex(bsc, 'getSampleTypeTitle', 'FieldIndex')
addIndex(bsc, 'getSampleTypeTitles', 'KeywordIndex')
addIndex(bsc, 'getSampleTypeUID', 'FieldIndex')
addIndex(bsc, 'getServiceUID', 'FieldIndex')
addIndex(bsc, 'getServiceUIDs', 'KeywordIndex')
addIndex(bsc, 'getTotalPrice', 'FieldIndex')
addIndex(bsc, 'getUnit', 'FieldIndex')
addIndex(bsc, 'getVATAmount', 'FieldIndex')
addIndex(bsc, 'getVolume', 'FieldIndex')
addIndex(bsc, 'is_active', 'BooleanIndex')
addColumn(bsc, 'path')
addColumn(bsc, 'UID')
addColumn(bsc, 'id')
addColumn(bsc, 'getId')
addColumn(bsc, 'Type')
addColumn(bsc, 'portal_type')
addColumn(bsc, 'getObjPositionInParent')
addColumn(bsc, 'Title')
addColumn(bsc, 'Description')
addColumn(bsc, 'title')
addColumn(bsc, 'sortable_title')
addColumn(bsc, 'description')
addColumn(bsc, 'review_state')
addColumn(bsc, 'getAccredited')
addColumn(bsc, 'getInstrumentType')
addColumn(bsc, 'getInstrumentTypeName')
addColumn(bsc, 'getInstrumentLocationName')
addColumn(bsc, 'getBlank')
addColumn(bsc, 'getCalculationTitle')
addColumn(bsc, 'getCalculationUID')
addColumn(bsc, 'getCalibrationExpiryDate')
addColumn(bsc, 'getCategoryTitle')
addColumn(bsc, 'getCategoryUID')
addColumn(bsc, 'getClientUID')
addColumn(bsc, 'getDepartmentTitle')
addColumn(bsc, 'getDuplicateVariation')
addColumn(bsc, 'getFormula')
addColumn(bsc, 'getFullname')
addColumn(bsc, 'getHazardous')
addColumn(bsc, 'getInstrumentTitle')
addColumn(bsc, 'getKeyword')
addColumn(bsc, 'getManagerName')
addColumn(bsc, 'getManagerPhone')
addColumn(bsc, 'getManagerEmail')
addColumn(bsc, 'getMaxTimeAllowed')
addColumn(bsc, 'getModel')
addColumn(bsc, 'getName')
addColumn(bsc, 'getPointOfCapture')
addColumn(bsc, 'getPrice')
addColumn(bsc, 'getSamplePointTitle')
addColumn(bsc, 'getSamplePointUID')
addColumn(bsc, 'getSampleTypeTitle')
addColumn(bsc, 'getSampleTypeUID')
addColumn(bsc, 'getServiceUID')
addColumn(bsc, 'getTotalPrice')
addColumn(bsc, 'getUnit')
addColumn(bsc, 'getVATAmount')
addColumn(bsc, 'getVolume')
# portal_catalog
pc = getToolByName(portal, 'portal_catalog', None)
if pc is None:
logger.warning('Could not find the portal_catalog tool.')
return
addIndex(pc, 'Analyst', 'FieldIndex')
addColumn(pc, 'Analyst')
# TODO: Nmrl
addColumn(pc, 'getProvince')
addColumn(pc, 'getDistrict')
# Setting up all LIMS catalogs defined in catalog folder
setup_catalogs(portal, getCatalogDefinitions())
def setup_health_catalogs(portal):
# an item should belong to only one catalog.
# that way looking it up means first looking up *the* catalog
# in which it is indexed, as well as making it cheaper to index.
def addIndex(cat, *args):
try:
cat.addIndex(*args)
except:
pass
def addColumn(cat, col):
try:
cat.addColumn(col)
except:
pass
logger.info("Setup catalogs ...")
# bika_catalog
bc = getToolByName(portal, 'bika_catalog', None)
if not bc:
logger.warning('Could not find the bika_catalog tool.')
return
addIndex(bc, 'getClientTitle', 'FieldIndex')
addIndex(bc, 'getPatientID', 'FieldIndex')
addIndex(bc, 'getPatientUID', 'FieldIndex')
addIndex(bc, 'getPatientTitle', 'FieldIndex')
addIndex(bc, 'getDoctorID', 'FieldIndex')
addIndex(bc, 'getDoctorUID', 'FieldIndex')
addIndex(bc, 'getDoctorTitle', 'FieldIndex')
addIndex(bc, 'getClientPatientID', 'FieldIndex')
addColumn(bc, 'getClientTitle')
addColumn(bc, 'getPatientID')
addColumn(bc, 'getPatientUID')
addColumn(bc, 'getPatientTitle')
addColumn(bc, 'getDoctorID')
addColumn(bc, 'getDoctorUID')
addColumn(bc, 'getDoctorTitle')
addColumn(bc, 'getClientPatientID')
# portal_catalog
pc = getToolByName(portal, 'portal_catalog', None)
if not pc:
logger.warning('Could not find the portal_catalog tool.')
return
addIndex(pc, 'getDoctorID', 'FieldIndex')
addIndex(pc, 'getDoctorUID', 'FieldIndex')
addIndex(pc, 'getPrimaryReferrerUID', 'FieldIndex')
addColumn(pc, 'getDoctorID')
addColumn(pc, 'getDoctorUID')
# bika_setup_catalog
bsc = getToolByName(portal, 'bika_setup_catalog', None)
if not bsc:
logger.warning('Could not find the bika_setup_catalog tool.')
return
at = getToolByName(portal, 'archetype_tool')
at.setCatalogsByType('Disease', [
'bika_setup_catalog',
])
at.setCatalogsByType('AetiologicAgent', [
'bika_setup_catalog',
])
at.setCatalogsByType('Treatment', ['bika_setup_catalog'])
at.setCatalogsByType('Symptom', ['bika_setup_catalog'])
at.setCatalogsByType('Drug', ['bika_setup_catalog'])
at.setCatalogsByType('DrugProhibition', ['bika_setup_catalog'])
at.setCatalogsByType('VaccinationCenter', [
'bika_setup_catalog',
])
at.setCatalogsByType('InsuranceCompany', [
'bika_setup_catalog',
])
at.setCatalogsByType('Immunization', [
'bika_setup_catalog',
])
at.setCatalogsByType('CaseStatus', [
'bika_setup_catalog',
])
at.setCatalogsByType('CaseOutcome', [
'bika_setup_catalog',
])
at.setCatalogsByType('IdentifierType', [
'bika_setup_catalog',
])
at.setCatalogsByType('CaseSyndromicClassification', ['bika_setup_catalog'])
at.setCatalogsByType('Ethnicity', [
'bika_setup_catalog',
])
addIndex(bsc, 'getGender', 'FieldIndex')
addColumn(bsc, 'getGender')
catalog_definitions_lims_health = getCatalogDefinitionsLIMS()
catalog_definitions_lims_health.update(getCatalogDefinitionsHealth())
# Updating health catalogs if there is any change in them
setup_catalogs(portal,
catalog_definitions_lims_health,
catalogs_extension=getCatalogExtensions())
logger.info("Setup catalogs [DONE]")
def setupHealthCatalogs(context):
# an item should belong to only one catalog.
# that way looking it up means first looking up *the* catalog
# in which it is indexed, as well as making it cheaper to index.
if context.readDataFile('bika.health.txt') is None:
return
portal = context.getSite()
def addIndex(cat, *args):
try:
cat.addIndex(*args)
except:
pass
def addColumn(cat, col):
try:
cat.addColumn(col)
except:
pass
# create lexicon
wordSplitter = Empty()
wordSplitter.group = 'Word Splitter'
wordSplitter.name = 'Unicode Whitespace splitter'
caseNormalizer = Empty()
caseNormalizer.group = 'Case Normalizer'
caseNormalizer.name = 'Unicode Case Normalizer'
stopWords = Empty()
stopWords.group = 'Stop Words'
stopWords.name = 'Remove listed and single char words'
elem = [wordSplitter, caseNormalizer, stopWords]
zc_extras = Empty()
zc_extras.index_type = 'Okapi BM25 Rank'
zc_extras.lexicon_id = 'Lexicon'
# bika_catalog
bc = getToolByName(portal, 'bika_catalog', None)
if bc == None:
logger.warning('Could not find the bika_catalog tool.')
return
addIndex(bc, 'getClientTitle', 'FieldIndex')
addIndex(bc, 'getPatientID', 'FieldIndex')
addIndex(bc, 'getPatientUID', 'FieldIndex')
addIndex(bc, 'getPatientTitle', 'FieldIndex')
addIndex(bc, 'getDoctorID', 'FieldIndex')
addIndex(bc, 'getDoctorUID', 'FieldIndex')
addIndex(bc, 'getDoctorTitle', 'FieldIndex')
addIndex(bc, 'getClientPatientID', 'FieldIndex')
addColumn(bc, 'getClientTitle')
addColumn(bc, 'getPatientID')
addColumn(bc, 'getPatientUID')
addColumn(bc, 'getPatientTitle')
addColumn(bc, 'getDoctorID')
addColumn(bc, 'getDoctorUID')
addColumn(bc, 'getDoctorTitle')
addColumn(bc, 'getClientPatientID')
# portal_catalog
pc = getToolByName(portal, 'portal_catalog', None)
if pc == None:
logger.warning('Could not find the portal_catalog tool.')
return
addIndex(pc, 'getDoctorID', 'FieldIndex')
addIndex(pc, 'getDoctorUID', 'FieldIndex')
addColumn(pc, 'getDoctorID')
addColumn(pc, 'getDoctorUID')
# bika_setup_catalog
bsc = getToolByName(portal, 'bika_setup_catalog', None)
if bsc == None:
logger.warning('Could not find the bika_setup_catalog tool.')
return
at = getToolByName(portal, 'archetype_tool')
at.setCatalogsByType('Disease', [
'bika_setup_catalog',
])
at.setCatalogsByType('AetiologicAgent', [
'bika_setup_catalog',
])
at.setCatalogsByType('Treatment', ['bika_setup_catalog'])
at.setCatalogsByType('Symptom', ['bika_setup_catalog'])
at.setCatalogsByType('Drug', ['bika_setup_catalog'])
at.setCatalogsByType('DrugProhibition', ['bika_setup_catalog'])
at.setCatalogsByType('VaccinationCenter', [
'bika_setup_catalog',
])
at.setCatalogsByType('InsuranceCompany', [
'bika_setup_catalog',
])
at.setCatalogsByType('Immunization', [
'bika_setup_catalog',
])
at.setCatalogsByType('CaseStatus', [
'bika_setup_catalog',
])
at.setCatalogsByType('CaseOutcome', [
'bika_setup_catalog',
])
at.setCatalogsByType('EpidemiologicalYear', [
'bika_setup_catalog',
])
at.setCatalogsByType('IdentifierType', [
'bika_setup_catalog',
])
at.setCatalogsByType('CaseSyndromicClassification', [
'bika_setup_catalog',
])
at.setCatalogsByType('Ethnicity', [
'bika_setup_catalog',
])
addIndex(bsc, 'getGender', 'FieldIndex')
addColumn(bsc, 'getGender')
catalog_definitions_lims_health = getCatalogDefinitionsLIMS()
catalog_definitions_lims_health.update(getCatalogDefinitionsHealth())
# Updating health catalogs if there is any change in them
setup_catalogs(portal,
catalog_definitions_lims_health,
catalogs_extension=getCatalogExtensions())
def setupCatalogs(self, portal):
# an item should belong to only one catalog.
# that way looking it up means first looking up *the* catalog
# in which it is indexed, as well as making it cheaper to index.
def addIndex(cat, *args):
# noinspection PyBroadException
try:
cat.addIndex(*args)
except:
pass
def addColumn(cat, col):
# noinspection PyBroadException
try:
cat.addColumn(col)
except:
pass
# create lexicon
wordSplitter = Empty()
wordSplitter.group = 'Word Splitter'
wordSplitter.name = 'Unicode Whitespace splitter'
caseNormalizer = Empty()
caseNormalizer.group = 'Case Normalizer'
caseNormalizer.name = 'Unicode Case Normalizer'
stopWords = Empty()
stopWords.group = 'Stop Words'
stopWords.name = 'Remove listed and single char words'
elem = [wordSplitter, caseNormalizer, stopWords]
zc_extras = Empty()
zc_extras.index_type = 'Okapi BM25 Rank'
zc_extras.lexicon_id = 'Lexicon'
# bika_catalog
bc = getToolByName(portal, 'bika_catalog', None)
if bc is None:
logger.warning('Could not find the bika_catalog tool.')
return
# noinspection PyBroadException
try:
bc.manage_addProduct['ZCTextIndex'].manage_addLexicon(
'Lexicon', 'Lexicon', elem)
except:
logger.warning('Could not add ZCTextIndex to bika_catalog')
pass
at = getToolByName(portal, 'archetype_tool')
at.setCatalogsByType('Batch', ['bika_catalog', 'portal_catalog'])
at.setCatalogsByType('Sample', ['bika_catalog', 'portal_catalog'])
at.setCatalogsByType('SamplePartition',
['bika_catalog', 'portal_catalog'])
at.setCatalogsByType('ReferenceSample',
['bika_catalog', 'portal_catalog'])
addIndex(bc, 'path', 'ExtendedPathIndex', 'getPhysicalPath')
addIndex(bc, 'allowedRolesAndUsers', 'KeywordIndex')
addIndex(bc, 'UID', 'FieldIndex')
addIndex(bc, 'SearchableText', 'ZCTextIndex', zc_extras)
addIndex(bc, 'Title', 'ZCTextIndex', zc_extras)
addIndex(bc, 'Description', 'ZCTextIndex', zc_extras)
addIndex(bc, 'id', 'FieldIndex')
addIndex(bc, 'getId', 'FieldIndex')
addIndex(bc, 'Type', 'FieldIndex')
addIndex(bc, 'portal_type', 'FieldIndex')
addIndex(bc, 'created', 'DateIndex')
addIndex(bc, 'Creator', 'FieldIndex')
addIndex(bc, 'getObjPositionInParent', 'GopipIndex')
addIndex(bc, 'title', 'FieldIndex', 'Title')
addIndex(bc, 'sortable_title', 'FieldIndex')
addIndex(bc, 'description', 'FieldIndex', 'Description')
addIndex(bc, 'review_state', 'FieldIndex')
addIndex(bc, 'inactive_state', 'FieldIndex')
addIndex(bc, 'worksheetanalysis_review_state', 'FieldIndex')
addIndex(bc, 'cancellation_state', 'FieldIndex')
addIndex(bc, 'Identifiers', 'KeywordIndex')
addIndex(bc, 'getDepartmentUIDs', 'KeywordIndex')
addIndex(bc, 'getAnalysisService', 'KeywordIndex')
addIndex(bc, 'getAnalyst', 'FieldIndex')
addIndex(bc, 'getAnalysts', 'KeywordIndex')
addIndex(bc, 'getAnalysesUIDs', 'KeywordIndex')
addIndex(bc, 'BatchDate', 'DateIndex')
addIndex(bc, 'getClientOrderNumber', 'FieldIndex')
addIndex(bc, 'getClientReference', 'FieldIndex')
addIndex(bc, 'getClientSampleID', 'FieldIndex')
addIndex(bc, 'getClientTitle', 'FieldIndex')
addIndex(bc, 'getClientUID', 'FieldIndex')
addIndex(bc, 'getContactTitle', 'FieldIndex')
addIndex(bc, 'getDateDisposed', 'DateIndex')
addIndex(bc, 'getDateExpired', 'DateIndex')
addIndex(bc, 'getDateOpened', 'DateIndex')
addIndex(bc, 'getDatePublished', 'DateIndex')
addIndex(bc, 'getDateReceived', 'DateIndex')
addIndex(bc, 'getDateSampled', 'DateIndex')
addIndex(bc, 'getDisposalDate', 'DateIndex')
addIndex(bc, 'getDueDate', 'DateIndex')
addIndex(bc, 'getExpiryDate', 'DateIndex')
addIndex(bc, 'getInvoiced', 'FieldIndex')
addIndex(bc, 'getPreserver', 'FieldIndex')
addIndex(bc, 'getReferenceDefinitionUID', 'FieldIndex')
addIndex(bc, 'getSampleID', 'FieldIndex')
addIndex(bc, 'getSamplePointTitle', 'FieldIndex')
addIndex(bc, 'getSamplePointUID', 'FieldIndex')
addIndex(bc, 'getSampler', 'FieldIndex')
addIndex(bc, 'getScheduledSamplingSampler', 'FieldIndex')
addIndex(bc, 'getSampleTypeTitle', 'FieldIndex')
addIndex(bc, 'getSampleTypeUID', 'FieldIndex')
addIndex(bc, 'getSampleUID', 'FieldIndex')
addIndex(bc, 'getSamplingDate', 'DateIndex')
addIndex(bc, 'getWorksheetTemplateTitle', 'FieldIndex')
addIndex(bc, 'BatchUID', 'FieldIndex')
addColumn(bc, 'path')
addColumn(bc, 'UID')
addColumn(bc, 'id')
addColumn(bc, 'getId')
addColumn(bc, 'Type')
addColumn(bc, 'portal_type')
addColumn(bc, 'creator')
addColumn(bc, 'Created')
addColumn(bc, 'Title')
addColumn(bc, 'Description')
addColumn(bc, 'sortable_title')
addColumn(bc, 'review_state')
addColumn(bc, 'inactive_state')
addColumn(bc, 'cancellation_state')
addColumn(bc, 'getAnalysts')
addColumn(bc, 'getSampleID')
addColumn(bc, 'getClientOrderNumber')
addColumn(bc, 'getClientReference')
addColumn(bc, 'getClientSampleID')
addColumn(bc, 'getContactTitle')
addColumn(bc, 'getClientTitle')
addColumn(bc, 'getSamplePointTitle')
addColumn(bc, 'getSampleTypeTitle')
addColumn(bc, 'getAnalysisService')
addColumn(bc, 'getDatePublished')
addColumn(bc, 'getDateReceived')
addColumn(bc, 'getDateSampled')
addColumn(bc, 'review_state')
# bika_setup_catalog
bsc = getToolByName(portal, 'bika_setup_catalog', None)
if bsc is None:
logger.warning('Could not find the setup catalog tool.')
return
# noinspection PyBroadException
try:
bsc.manage_addProduct['ZCTextIndex'].manage_addLexicon(
'Lexicon', 'Lexicon', elem)
except:
logger.warning('Could not add ZCTextIndex to bika_setup_catalog')
pass
at = getToolByName(portal, 'archetype_tool')
at.setCatalogsByType('Department',
['bika_setup_catalog', "portal_catalog", ])
at.setCatalogsByType('Container', ['bika_setup_catalog', ])
at.setCatalogsByType('ContainerType', ['bika_setup_catalog', ])
at.setCatalogsByType('AnalysisCategory', ['bika_setup_catalog', ])
at.setCatalogsByType('AnalysisService',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('AnalysisSpec', ['bika_setup_catalog', ])
at.setCatalogsByType('SampleCondition', ['bika_setup_catalog'])
at.setCatalogsByType('SampleMatrix', ['bika_setup_catalog', ])
at.setCatalogsByType('SampleType',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('SamplePoint',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('StorageLocation',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('SamplingDeviation', ['bika_setup_catalog', ])
at.setCatalogsByType('IdentifierType', ['bika_setup_catalog', ])
at.setCatalogsByType('Instrument',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('InstrumentType',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('InstrumentLocation',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('Method', ['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('Multifile', ['bika_setup_catalog'])
at.setCatalogsByType('AttachmentType', ['bika_setup_catalog', ])
at.setCatalogsByType('Attachment', ['portal_catalog'])
at.setCatalogsByType('Calculation',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('AnalysisProfile',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('ARTemplate',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('LabProduct',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('LabContact',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('Manufacturer',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('Preservation', ['bika_setup_catalog', ])
at.setCatalogsByType('ReferenceDefinition',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('SRTemplate',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('SubGroup', ['bika_setup_catalog', ])
at.setCatalogsByType('Supplier',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('Unit', ['bika_setup_catalog', ])
at.setCatalogsByType('WorksheetTemplate',
['bika_setup_catalog', 'portal_catalog'])
at.setCatalogsByType('BatchLabel', ['bika_setup_catalog', ])
addIndex(bsc, 'path', 'ExtendedPathIndex', 'getPhysicalPath')
addIndex(bsc, 'allowedRolesAndUsers', 'KeywordIndex')
addIndex(bsc, 'UID', 'FieldIndex')
addIndex(bsc, 'SearchableText', 'ZCTextIndex', zc_extras)
addIndex(bsc, 'Title', 'ZCTextIndex', zc_extras)
addIndex(bsc, 'Description', 'ZCTextIndex', zc_extras)
addIndex(bsc, 'id', 'FieldIndex')
addIndex(bsc, 'getId', 'FieldIndex')
addIndex(bsc, 'Type', 'FieldIndex')
addIndex(bsc, 'portal_type', 'FieldIndex')
addIndex(bsc, 'created', 'DateIndex')
addIndex(bsc, 'Creator', 'FieldIndex')
addIndex(bsc, 'getObjPositionInParent', 'GopipIndex')
addIndex(bc, 'Identifiers', 'KeywordIndex')
addIndex(bsc, 'title', 'FieldIndex', 'Title')
addIndex(bsc, 'sortable_title', 'FieldIndex')
addIndex(bsc, 'description', 'FieldIndex', 'Description')
addIndex(bsc, 'review_state', 'FieldIndex')
addIndex(bsc, 'inactive_state', 'FieldIndex')
addIndex(bsc, 'cancellation_state', 'FieldIndex')
addIndex(bsc, 'getAccredited', 'FieldIndex')
addIndex(bsc, 'getAnalyst', 'FieldIndex')
addIndex(bsc, 'getBlank', 'FieldIndex')
addIndex(bsc, 'getCalculationTitle', 'FieldIndex')
addIndex(bsc, 'getCalculationUID', 'FieldIndex')
addIndex(bsc, 'getCalibrationExpiryDate', 'FieldIndex')
addIndex(bsc, 'getCategoryTitle', 'FieldIndex')
addIndex(bsc, 'getCategoryUID', 'FieldIndex')
addIndex(bsc, 'getClientUID', 'FieldIndex')
addIndex(bsc, 'getDepartmentTitle', 'FieldIndex')
addIndex(bsc, 'getDepartmentUID', 'FieldIndex')
addIndex(bsc, 'getDocumentID', 'FieldIndex')
addIndex(bsc, 'getDuplicateVariation', 'FieldIndex')
addIndex(bsc, 'getFormula', 'FieldIndex')
addIndex(bsc, 'getFullname', 'FieldIndex')
addIndex(bsc, 'getHazardous', 'FieldIndex')
addIndex(bsc, 'getInstrumentLocationName', 'FieldIndex')
addIndex(bsc, 'getInstrumentTitle', 'FieldIndex')
addIndex(bsc, 'getInstrumentType', 'FieldIndex')
addIndex(bsc, 'getInstrumentTypeName', 'FieldIndex')
addIndex(bsc, 'getKeyword', 'FieldIndex')
addIndex(bsc, 'getManagerEmail', 'FieldIndex')
addIndex(bsc, 'getManagerName', 'FieldIndex')
addIndex(bsc, 'getManagerPhone', 'FieldIndex')
addIndex(bsc, 'getMaxTimeAllowed', 'FieldIndex')
addIndex(bsc, 'getMethodID', 'FieldIndex')
addIndex(bsc, 'getAvailableMethodUIDs', 'KeywordIndex')
addIndex(bsc, 'getModel', 'FieldIndex')
addIndex(bsc, 'getName', 'FieldIndex')
addIndex(bsc, 'getPointOfCapture', 'FieldIndex')
addIndex(bsc, 'getPrice', 'FieldIndex')
addIndex(bsc, 'getSamplePointTitle', 'KeywordIndex')
addIndex(bsc, 'getSamplePointUID', 'FieldIndex')
addIndex(bsc, 'getSampleTypeTitle', 'FieldIndex')
addIndex(bsc, 'getSampleTypeTitles', 'KeywordIndex')
addIndex(bsc, 'getSampleTypeUID', 'FieldIndex')
addIndex(bsc, 'getServiceUID', 'FieldIndex')
addIndex(bsc, 'getServiceUIDs', 'KeywordIndex')
addIndex(bsc, 'getTotalPrice', 'FieldIndex')
addIndex(bsc, 'getUnit', 'FieldIndex')
addIndex(bsc, 'getVATAmount', 'FieldIndex')
addIndex(bsc, 'getVolume', 'FieldIndex')
addColumn(bsc, 'path')
addColumn(bsc, 'UID')
addColumn(bsc, 'id')
addColumn(bsc, 'getId')
addColumn(bsc, 'Type')
addColumn(bsc, 'portal_type')
addColumn(bsc, 'getObjPositionInParent')
addColumn(bsc, 'Title')
addColumn(bsc, 'Description')
addColumn(bsc, 'title')
addColumn(bsc, 'sortable_title')
addColumn(bsc, 'description')
addColumn(bsc, 'review_state')
addColumn(bsc, 'inactive_state')
addColumn(bsc, 'cancellation_state')
addColumn(bsc, 'getAccredited')
addColumn(bsc, 'getInstrumentType')
addColumn(bsc, 'getInstrumentTypeName')
addColumn(bsc, 'getInstrumentLocationName')
addColumn(bsc, 'getBlank')
addColumn(bsc, 'getCalculationTitle')
addColumn(bsc, 'getCalculationUID')
addColumn(bsc, 'getCalibrationExpiryDate')
addColumn(bsc, 'getCategoryTitle')
addColumn(bsc, 'getCategoryUID')
addColumn(bsc, 'getClientUID')
addColumn(bsc, 'getDepartmentTitle')
addColumn(bsc, 'getDuplicateVariation')
addColumn(bsc, 'getFormula')
addColumn(bsc, 'getFullname')
addColumn(bsc, 'getHazardous')
addColumn(bsc, 'getInstrumentTitle')
addColumn(bsc, 'getKeyword')
addColumn(bsc, 'getManagerName')
addColumn(bsc, 'getManagerPhone')
addColumn(bsc, 'getManagerEmail')
addColumn(bsc, 'getMaxTimeAllowed')
addColumn(bsc, 'getModel')
addColumn(bsc, 'getName')
addColumn(bsc, 'getPointOfCapture')
addColumn(bsc, 'getPrice')
addColumn(bsc, 'getSamplePointTitle')
addColumn(bsc, 'getSamplePointUID')
addColumn(bsc, 'getSampleTypeTitle')
addColumn(bsc, 'getSampleTypeUID')
addColumn(bsc, 'getServiceUID')
addColumn(bsc, 'getTotalPrice')
addColumn(bsc, 'getUnit')
addColumn(bsc, 'getVATAmount')
addColumn(bsc, 'getVolume')
# portal_catalog
pc = getToolByName(portal, 'portal_catalog', None)
if pc is None:
logger.warning('Could not find the portal_catalog tool.')
return
addIndex(pc, 'Analyst', 'FieldIndex')
addColumn(pc, 'Analyst')
# TODO: Nmrl
addColumn(pc, 'getProvince')
addColumn(pc, 'getDistrict')
# Setting up all LIMS catalogs defined in catalog folder
setup_catalogs(portal, getCatalogDefinitions())