def create_retest(ar):
"""Creates a retest (Analysis Request) from an invalidated Analysis Request
:param ar: The invalidated Analysis Request
:type ar: IAnalysisRequest
:rtype: IAnalysisRequest
"""
if not ar:
raise ValueError("Source Analysis Request cannot be None")
if not IAnalysisRequest.providedBy(ar):
raise ValueError("Type not supported: {}".format(repr(type(ar))))
if ar.getRetest():
# Do not allow the creation of another retest!
raise ValueError("Retest already set")
if not ar.isInvalid():
# Analysis Request must be in 'invalid' state
raise ValueError("Cannot do a retest from an invalid Analysis Request"
.format(repr(ar)))
# 0. Open the actions pool
actions_pool = ActionHandlerPool.get_instance()
actions_pool.queue_pool()
# 1. Create the Retest (Analysis Request)
ignore = ['Analyses', 'DatePublished', 'Invalidated', 'Sample']
retest = _createObjectByType("AnalysisRequest", ar.aq_parent, tmpID())
retest.setSample(ar.getSample())
copy_field_values(ar, retest, ignore_fieldnames=ignore)
renameAfterCreation(retest)
# 2. Copy the analyses from the source
intermediate_states = ['retracted', 'reflexed']
for an in ar.getAnalyses(full_objects=True):
if (api.get_workflow_status_of(an) in intermediate_states):
# Exclude intermediate analyses
continue
nan = _createObjectByType("Analysis", retest, an.getKeyword())
# Make a copy
ignore_fieldnames = ['DataAnalysisPublished']
copy_field_values(an, nan, ignore_fieldnames=ignore_fieldnames)
nan.unmarkCreationFlag()
push_reindex_to_actions_pool(nan)
# 3. Assign the source to retest
retest.setInvalidated(ar)
# 4. Transition the retest to "sample_received"!
changeWorkflowState(retest, 'bika_ar_workflow', 'sample_received')
# 5. Reindex and other stuff
push_reindex_to_actions_pool(retest)
push_reindex_to_actions_pool(retest.aq_parent)
# 6. Resume the actions pool
actions_pool.resume()
return retest
def create_retest(ar):
"""Creates a retest (Analysis Request) from an invalidated Analysis Request
:param ar: The invalidated Analysis Request
:type ar: IAnalysisRequest
:rtype: IAnalysisRequest
"""
if not ar:
raise ValueError("Source Analysis Request cannot be None")
if not IAnalysisRequest.providedBy(ar):
raise ValueError("Type not supported: {}".format(repr(type(ar))))
if ar.getRetest():
# Do not allow the creation of another retest!
raise ValueError("Retest already set")
if not ar.isInvalid():
# Analysis Request must be in 'invalid' state
raise ValueError(
"Cannot do a retest from an invalid Analysis Request".format(
repr(ar)))
# 1. Create the Retest (Analysis Request)
ignore = ['Analyses', 'DatePublished', 'Invalidated', 'Sample']
retest = _createObjectByType("AnalysisRequest", ar.aq_parent, tmpID())
retest.setSample(ar.getSample())
copy_field_values(ar, retest, ignore_fieldnames=ignore)
renameAfterCreation(retest)
# 2. Copy the analyses from the source
criteria = dict(full_objects=True, retracted=False, reflexed=False)
for an in ar.getAnalyses(**criteria):
nan = _createObjectByType("Analysis", retest, an.getKeyword())
# Make a copy
ignore_fieldnames = ['Verificators', 'DataAnalysisPublished']
copy_field_values(an, nan, ignore_fieldnames=ignore_fieldnames)
nan.unmarkCreationFlag()
# Set the workflow state of the analysis to 'sample_received'. Since we
# keep the results of the previous analyses, these will be preserved,
# only awaiting for their submission
changeWorkflowState(nan, 'bika_analysis_workflow', 'sample_received')
nan.reindexObject()
# 3. Assign the source to retest
retest.setInvalidated(ar)
# 4. Transition the retest to "sample_received"!
changeWorkflowState(retest, 'bika_ar_workflow', 'sample_received')
# 5. Reindex and other stuff
retest.reindexObject()
retest.aq_parent.reindexObject()
return retest
def cloneAR(self, ar):
newar = _createObjectByType("AnalysisRequest", ar.aq_parent, tmpID())
newar.setSample(ar.getSample())
ignore_fieldnames = [
'Analyses', 'DatePublished', 'DatePublishedViewer',
'ParentAnalysisRequest', 'ChildAnaysisRequest', 'Digest', 'Sample'
]
copy_field_values(ar, newar, ignore_fieldnames=ignore_fieldnames)
# Set the results for each AR analysis
ans = ar.getAnalyses(full_objects=True)
# If a whole AR is retracted and contains retracted Analyses, these
# retracted analyses won't be created/shown in the new AR
workflow = getToolByName(self, "portal_workflow")
analyses = [
x for x in ans
if workflow.getInfoFor(x, "review_state") not in ("retracted")
]
for an in analyses:
if hasattr(an, 'IsReflexAnalysis') and an.IsReflexAnalysis:
# We don't want reflex analyses to be copied
continue
try:
nan = _createObjectByType("Analysis", newar, an.getKeyword())
except Exception as e:
from bika.lims import logger
logger.warn(
'Cannot create analysis %s inside %s (%s)' %
an.getAnalysisService().Title(), newar, e)
continue
# Make a copy
ignore_fieldnames = ['Verificators', 'DataAnalysisPublished']
copy_field_values(an, nan, ignore_fieldnames=ignore_fieldnames)
nan.unmarkCreationFlag()
zope.event.notify(ObjectInitializedEvent(nan))
changeWorkflowState(nan, 'bika_analysis_workflow',
'to_be_verified')
nan.reindexObject()
newar.reindexObject()
newar.aq_parent.reindexObject()
renameAfterCreation(newar)
if hasattr(ar, 'setChildAnalysisRequest'):
ar.setChildAnalysisRequest(newar)
newar.setParentAnalysisRequest(ar)
return newar
